Experiment: Glycocyamine 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03643 and PFR28_03644 are separated by 8 nucleotides PFR28_03644 and PFR28_03645 are separated by 197 nucleotides
PFR28_03643: PFR28_03643 - Ferrochelatase, at 4,205,301 to 4,206,326
_03643
PFR28_03644: PFR28_03644 - Epimerase family protein, at 4,206,335 to 4,207,240
_03644
PFR28_03645: PFR28_03645 - Renalase, at 4,207,438 to 4,208,424
_03645
Position (kb) 4206
4207
4208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4206.337 kb on - strand at 4206.337 kb on - strand at 4206.337 kb on - strand at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.580 kb on + strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.581 kb on - strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.582 kb on + strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.583 kb on - strand, within PFR28_03644 at 4206.644 kb on - strand, within PFR28_03644 at 4206.710 kb on + strand, within PFR28_03644 at 4206.767 kb on + strand, within PFR28_03644 at 4206.768 kb on - strand, within PFR28_03644 at 4207.123 kb on + strand, within PFR28_03644 at 4207.123 kb on + strand, within PFR28_03644 at 4207.154 kb on + strand at 4207.154 kb on + strand at 4207.154 kb on + strand at 4207.155 kb on - strand at 4207.155 kb on - strand at 4207.216 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.232 kb on + strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.233 kb on - strand at 4207.264 kb on + strand at 4207.276 kb on + strand at 4207.276 kb on + strand at 4207.277 kb on - strand at 4207.287 kb on + strand at 4207.288 kb on - strand at 4207.288 kb on - strand at 4207.289 kb on + strand at 4207.290 kb on - strand at 4207.290 kb on - strand at 4207.290 kb on - strand at 4207.306 kb on + strand at 4207.327 kb on + strand at 4207.327 kb on + strand at 4207.327 kb on + strand at 4207.328 kb on - strand at 4207.328 kb on - strand at 4207.333 kb on + strand at 4207.333 kb on + strand at 4207.333 kb on + strand at 4207.334 kb on - strand at 4207.334 kb on - strand at 4207.334 kb on - strand at 4207.361 kb on - strand at 4207.367 kb on + strand at 4207.368 kb on - strand at 4207.370 kb on - strand at 4207.370 kb on - strand at 4207.407 kb on + strand at 4207.407 kb on + strand at 4207.407 kb on + strand at 4207.407 kb on + strand at 4207.408 kb on - strand at 4207.408 kb on - strand at 4207.414 kb on + strand at 4207.414 kb on + strand at 4207.425 kb on - strand at 4207.425 kb on - strand at 4207.445 kb on + strand at 4207.445 kb on + strand at 4207.445 kb on + strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.446 kb on - strand at 4207.449 kb on + strand at 4207.450 kb on - strand at 4207.450 kb on - strand at 4207.450 kb on - strand at 4207.450 kb on - strand at 4207.450 kb on - strand at 4207.533 kb on + strand at 4207.533 kb on + strand at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.693 kb on + strand, within PFR28_03645 at 4207.694 kb on - strand, within PFR28_03645 at 4207.694 kb on - strand, within PFR28_03645 at 4207.715 kb on + strand, within PFR28_03645 at 4207.715 kb on + strand, within PFR28_03645 at 4207.715 kb on + strand, within PFR28_03645 at 4207.716 kb on - strand, within PFR28_03645 at 4208.118 kb on + strand, within PFR28_03645
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 20 mM (C) remove 4,206,337 - +0.1 4,206,337 - -0.8 4,206,337 - +0.1 4,206,580 + PFR28_03644 0.27 +0.9 4,206,580 + PFR28_03644 0.27 +1.9 4,206,580 + PFR28_03644 0.27 -1.9 4,206,580 + PFR28_03644 0.27 +1.2 4,206,580 + PFR28_03644 0.27 +0.3 4,206,580 + PFR28_03644 0.27 +0.2 4,206,580 + PFR28_03644 0.27 +0.7 4,206,581 - PFR28_03644 0.27 -1.6 4,206,581 - PFR28_03644 0.27 -0.3 4,206,581 - PFR28_03644 0.27 -3.1 4,206,581 - PFR28_03644 0.27 -0.5 4,206,581 - PFR28_03644 0.27 -1.3 4,206,581 - PFR28_03644 0.27 -0.5 4,206,581 - PFR28_03644 0.27 +0.4 4,206,581 - PFR28_03644 0.27 -0.2 4,206,581 - PFR28_03644 0.27 +0.7 4,206,582 + PFR28_03644 0.27 -0.4 4,206,582 + PFR28_03644 0.27 -1.9 4,206,582 + PFR28_03644 0.27 +0.4 4,206,582 + PFR28_03644 0.27 -0.5 4,206,582 + PFR28_03644 0.27 -0.4 4,206,582 + PFR28_03644 0.27 -1.8 4,206,582 + PFR28_03644 0.27 -0.3 4,206,582 + PFR28_03644 0.27 +0.0 4,206,582 + PFR28_03644 0.27 -1.1 4,206,583 - PFR28_03644 0.27 +1.1 4,206,583 - PFR28_03644 0.27 +0.7 4,206,583 - PFR28_03644 0.27 +1.5 4,206,583 - PFR28_03644 0.27 +0.8 4,206,583 - PFR28_03644 0.27 +1.1 4,206,583 - PFR28_03644 0.27 +0.1 4,206,583 - PFR28_03644 0.27 -1.9 4,206,583 - PFR28_03644 0.27 -0.1 4,206,644 - PFR28_03644 0.34 -1.0 4,206,710 + PFR28_03644 0.41 -1.4 4,206,767 + PFR28_03644 0.48 -0.1 4,206,768 - PFR28_03644 0.48 +0.0 4,207,123 + PFR28_03644 0.87 -0.6 4,207,123 + PFR28_03644 0.87 -0.9 4,207,154 + +0.3 4,207,154 + -0.8 4,207,154 + +0.7 4,207,155 - -0.4 4,207,155 - -0.1 4,207,216 + +0.4 4,207,232 + +0.6 4,207,232 + -1.0 4,207,232 + -0.3 4,207,232 + +0.6 4,207,232 + -1.0 4,207,232 + -1.2 4,207,232 + +0.2 4,207,232 + +0.2 4,207,232 + -0.4 4,207,232 + -1.1 4,207,232 + -0.3 4,207,232 + -0.7 4,207,233 - -0.1 4,207,233 - +0.8 4,207,233 - -1.0 4,207,233 - -0.1 4,207,233 - +0.3 4,207,233 - -0.3 4,207,233 - -0.2 4,207,233 - -1.2 4,207,233 - -0.6 4,207,233 - -0.2 4,207,233 - +0.4 4,207,233 - -1.2 4,207,233 - -1.0 4,207,233 - -1.2 4,207,233 - -1.2 4,207,233 - -0.4 4,207,264 + -1.1 4,207,276 + +0.8 4,207,276 + -0.1 4,207,277 - -2.2 4,207,287 + +1.9 4,207,288 - +0.9 4,207,288 - -1.0 4,207,289 + -0.5 4,207,290 - +0.1 4,207,290 - +0.8 4,207,290 - +0.6 4,207,306 + -0.6 4,207,327 + +0.4 4,207,327 + -1.5 4,207,327 + +0.8 4,207,328 - +0.4 4,207,328 - -0.6 4,207,333 + -0.5 4,207,333 + -2.1 4,207,333 + -0.6 4,207,334 - +0.2 4,207,334 - -0.1 4,207,334 - -1.1 4,207,361 - -1.3 4,207,367 + -1.6 4,207,368 - +1.1 4,207,370 - -1.4 4,207,370 - -1.5 4,207,407 + +0.2 4,207,407 + -1.6 4,207,407 + +0.0 4,207,407 + +0.4 4,207,408 - +0.2 4,207,408 - -0.7 4,207,414 + -0.8 4,207,414 + -0.8 4,207,425 - -0.1 4,207,425 - +0.7 4,207,445 + -0.4 4,207,445 + +0.5 4,207,445 + -1.4 4,207,446 - -1.8 4,207,446 - +1.9 4,207,446 - -0.8 4,207,446 - +2.5 4,207,446 - -0.1 4,207,446 - +0.4 4,207,446 - -0.6 4,207,449 + +1.9 4,207,450 - +0.7 4,207,450 - -0.4 4,207,450 - -2.6 4,207,450 - -0.4 4,207,450 - +1.1 4,207,533 + -0.9 4,207,533 + +0.1 4,207,693 + PFR28_03645 0.26 +1.9 4,207,693 + PFR28_03645 0.26 -0.9 4,207,693 + PFR28_03645 0.26 +0.9 4,207,693 + PFR28_03645 0.26 +2.9 4,207,693 + PFR28_03645 0.26 -0.3 4,207,693 + PFR28_03645 0.26 +0.0 4,207,693 + PFR28_03645 0.26 +0.1 4,207,694 - PFR28_03645 0.26 +1.1 4,207,694 - PFR28_03645 0.26 -0.5 4,207,715 + PFR28_03645 0.28 +0.4 4,207,715 + PFR28_03645 0.28 +0.9 4,207,715 + PFR28_03645 0.28 -0.1 4,207,716 - PFR28_03645 0.28 +0.8 4,208,118 + PFR28_03645 0.69 -0.1
Or see this region's nucleotide sequence