Strain Fitness in Pseudomonas sp. RS175 around PFR28_02947

Experiment: Glycocyamine 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycocyamine 20 mM (C)
3,455,008	-		PFR28_02946	0.70	+0.8
3,455,008	-		PFR28_02946	0.70	-0.1
3,455,078	+		PFR28_02946	0.73	+0.5
3,455,078	+		PFR28_02946	0.73	+0.2
3,455,079	-		PFR28_02946	0.73	-0.8
3,455,079	-		PFR28_02946	0.73	+0.5
3,455,275	-		PFR28_02946	0.82	-1.3
3,455,297	+		PFR28_02946	0.83	+0.1
3,455,297	+		PFR28_02946	0.83	+1.2
3,455,297	+		PFR28_02946	0.83	-0.4
3,455,297	+		PFR28_02946	0.83	+0.5
3,455,297	+		PFR28_02946	0.83	+1.4
3,455,298	-		PFR28_02946	0.83	-0.9
3,455,298	-		PFR28_02946	0.83	+0.3
3,455,350	-		PFR28_02946	0.86	-0.7
3,455,351	+		PFR28_02946	0.86	+0.9
3,455,351	+		PFR28_02946	0.86	-1.2
3,455,351	+		PFR28_02946	0.86	-0.5
3,455,351	+		PFR28_02946	0.86	+1.1
3,455,351	+		PFR28_02946	0.86	+0.6
3,455,351	+		PFR28_02946	0.86	+0.8
3,455,352	-		PFR28_02946	0.86	+0.3
3,455,352	-		PFR28_02946	0.86	-1.1
3,455,352	-		PFR28_02946	0.86	+0.9
3,455,352	-		PFR28_02946	0.86	+1.0
3,455,352	-		PFR28_02946	0.86	-1.2
3,455,352	-		PFR28_02946	0.86	-0.2
3,455,416	+		PFR28_02946	0.89	+0.1
3,455,416	+		PFR28_02946	0.89	+0.1
3,455,416	+		PFR28_02946	0.89	-0.7
3,455,416	+		PFR28_02946	0.89	-0.1
3,455,416	+		PFR28_02946	0.89	-0.1
3,455,417	-		PFR28_02946	0.89	+0.7
3,455,417	-		PFR28_02946	0.89	+1.3
3,455,417	-		PFR28_02946	0.89	-0.9
3,455,417	-		PFR28_02946	0.89	-1.1
3,455,483	+				+0.6
3,455,483	+				-0.9
3,455,483	+				-0.3
3,455,483	+				-0.6
3,455,484	-				-1.0
3,455,689	+				-2.2
3,455,689	+				+0.1
3,455,689	+				-1.3
3,455,732	+				-1.8
3,455,733	-				-0.5
3,455,774	+				-1.6
3,455,774	+				+0.2
3,455,774	+				+0.2
3,455,774	+				-1.1
3,455,774	+				-1.3
3,455,774	+				-2.2
3,455,774	+				-0.5
3,455,774	+				-0.9
3,455,774	+				+0.5
3,455,775	-				-1.3
3,455,775	-				-1.1
3,455,775	-				-1.3
3,455,775	-				-0.1
3,455,775	-				-1.9
3,455,775	-				-1.1
3,455,775	-				+0.1
3,455,775	-				+1.4
3,455,775	-				+2.1
3,455,775	-				-1.3
3,455,775	-				+0.1
3,455,815	+				-0.5
3,455,815	+				-1.6
3,455,815	+				-1.0
3,455,822	-				-0.9
3,455,822	-				+0.1
3,455,835	-				-0.3
3,455,840	+				+0.6
3,455,840	+				-0.1
3,455,840	+				-1.1
3,455,840	+				-0.4
3,455,840	+				-0.9
3,455,840	+				+1.1
3,455,840	+				-0.6
3,455,840	+				-0.4
3,455,840	+				+1.6
3,455,840	+				+0.8
3,455,840	+				-0.3
3,455,840	+				-0.7
3,455,840	+				-0.2
3,455,841	-				-2.1
3,455,841	-				+1.1
3,455,841	-				-1.4
3,455,841	-				-3.7
3,455,841	-				+0.1
3,455,843	+				+0.3
3,455,979	+				-0.4
3,455,979	+				+0.3
3,455,980	-				-0.6
3,456,091	+		PFR28_02947	0.20	+0.5
3,456,091	+		PFR28_02947	0.20	-0.0
3,456,091	+		PFR28_02947	0.20	+0.0
3,456,091	+		PFR28_02947	0.20	-0.5
3,456,091	+		PFR28_02947	0.20	+0.9
3,456,091	+		PFR28_02947	0.20	-2.2
3,456,091	+		PFR28_02947	0.20	-0.7
3,456,091	+		PFR28_02947	0.20	+0.9
3,456,092	-		PFR28_02947	0.20	-0.3
3,456,092	-		PFR28_02947	0.20	-0.4
3,456,092	-		PFR28_02947	0.20	-0.5
3,456,092	-		PFR28_02947	0.20	-0.4
3,456,095	-		PFR28_02947	0.20	-1.1
3,456,157	+		PFR28_02947	0.26	-1.9
3,456,249	+		PFR28_02947	0.35	-0.1
3,456,249	+		PFR28_02947	0.35	-0.8
3,456,249	+		PFR28_02947	0.35	+1.8
3,456,249	+		PFR28_02947	0.35	+0.5
3,456,250	-		PFR28_02947	0.35	-0.1
3,456,250	-		PFR28_02947	0.35	+0.3
3,456,250	-		PFR28_02947	0.35	-1.9
3,456,250	-		PFR28_02947	0.35	-0.5
3,456,271	-		PFR28_02947	0.37	+1.7
3,456,297	+		PFR28_02947	0.40	+1.0
3,456,297	+		PFR28_02947	0.40	-1.7
3,456,297	+		PFR28_02947	0.40	+0.1
3,456,298	-		PFR28_02947	0.40	-1.3
3,456,298	-		PFR28_02947	0.40	-0.2
3,456,298	-		PFR28_02947	0.40	-0.2
3,456,298	-		PFR28_02947	0.40	+1.7
3,456,298	-		PFR28_02947	0.40	-1.0
3,456,298	-		PFR28_02947	0.40	+0.2
3,456,298	-		PFR28_02947	0.40	+1.1
3,456,315	+		PFR28_02947	0.41	-0.3
3,456,315	+		PFR28_02947	0.41	+0.5
3,456,315	+		PFR28_02947	0.41	+1.6
3,456,422	-		PFR28_02947	0.52	+0.2
3,456,422	-		PFR28_02947	0.52	-1.8
3,456,422	-		PFR28_02947	0.52	+0.2
3,456,469	-		PFR28_02947	0.56	-0.5
3,456,507	+		PFR28_02947	0.60	+0.2
3,456,507	+		PFR28_02947	0.60	-0.1
3,456,579	+		PFR28_02947	0.67	-1.5
3,456,579	+		PFR28_02947	0.67	+0.5
3,456,580	-		PFR28_02947	0.67	-0.8
3,456,580	-		PFR28_02947	0.67	-2.0
3,456,580	-		PFR28_02947	0.67	-0.7
3,456,580	-		PFR28_02947	0.67	-2.7
3,456,580	-		PFR28_02947	0.67	+1.4
3,456,580	-		PFR28_02947	0.67	+0.5
3,456,580	-		PFR28_02947	0.67	-0.0
3,456,600	+		PFR28_02947	0.69	+0.8
3,456,600	+		PFR28_02947	0.69	-1.5
3,456,600	+		PFR28_02947	0.69	-0.5
3,456,600	+		PFR28_02947	0.69	+0.3
3,456,600	+		PFR28_02947	0.69	-2.1
3,456,600	+		PFR28_02947	0.69	+0.4
3,456,600	+		PFR28_02947	0.69	-0.7
3,456,600	+		PFR28_02947	0.69	+2.1
3,456,600	+		PFR28_02947	0.69	+2.0
3,456,600	+		PFR28_02947	0.69	+2.1
3,456,600	+		PFR28_02947	0.69	+0.1
3,456,600	+		PFR28_02947	0.69	-1.5
3,456,600	+		PFR28_02947	0.69	+1.1
3,456,601	-		PFR28_02947	0.69	-1.0
3,456,601	-		PFR28_02947	0.69	-1.5
3,456,601	-		PFR28_02947	0.69	-0.2
3,456,601	-		PFR28_02947	0.69	-1.9
3,456,601	-		PFR28_02947	0.69	-1.4
3,456,601	-		PFR28_02947	0.69	+0.2
3,456,601	-		PFR28_02947	0.69	-0.1
3,456,601	-		PFR28_02947	0.69	+0.5
3,456,601	-		PFR28_02947	0.69	+0.6
3,456,601	-		PFR28_02947	0.69	-0.4
3,456,601	-		PFR28_02947	0.69	-0.2
3,456,601	-		PFR28_02947	0.69	+2.1
3,456,601	-		PFR28_02947	0.69	-0.0
3,456,601	-		PFR28_02947	0.69	+2.1
3,456,601	-		PFR28_02947	0.69	-1.8
3,456,601	-		PFR28_02947	0.69	-0.3
3,456,601	-		PFR28_02947	0.69	+1.3
3,456,601	-		PFR28_02947	0.69	-1.1
3,456,601	-		PFR28_02947	0.69	-0.3
3,456,629	+		PFR28_02947	0.72	-0.7
3,456,630	-		PFR28_02947	0.72	+0.2
3,456,630	-		PFR28_02947	0.72	-1.7
3,456,663	+		PFR28_02947	0.75	-0.4
3,456,663	+		PFR28_02947	0.75	-0.7
3,456,663	+		PFR28_02947	0.75	-1.0
3,456,663	+		PFR28_02947	0.75	-0.4
3,456,664	-		PFR28_02947	0.75	+0.9
3,456,664	-		PFR28_02947	0.75	-1.7
3,456,664	-		PFR28_02947	0.75	-0.5
3,456,664	-		PFR28_02947	0.75	+0.5
3,456,664	-		PFR28_02947	0.75	+0.1
3,456,699	+		PFR28_02947	0.79	-0.5
3,456,699	+		PFR28_02947	0.79	-0.8
3,456,699	+		PFR28_02947	0.79	+0.7
3,456,700	-		PFR28_02947	0.79	+0.2
3,456,700	-		PFR28_02947	0.79	+0.3
3,456,700	-		PFR28_02947	0.79	-0.5
3,456,772	-		PFR28_02947	0.86	+3.4
3,456,780	+		PFR28_02947	0.87	-0.7
3,456,780	+		PFR28_02947	0.87	-0.3
3,456,780	+		PFR28_02947	0.87	-0.2
3,456,780	+		PFR28_02947	0.87	+0.5
3,456,781	-		PFR28_02947	0.87	-0.2
3,456,781	-		PFR28_02947	0.87	-0.7
3,456,894	+				+1.1
3,456,894	+				+0.3
3,456,895	-				+2.1
3,456,895	-				+0.0
3,456,949	+				-1.5
3,456,949	+				-0.5
3,456,949	+				-0.2
3,456,949	+				-0.5
3,456,949	+				+0.6
3,456,949	+				-1.0
3,456,949	+				-0.3
3,456,950	-				-0.8
3,456,950	-				+0.5
3,456,950	-				+0.8
3,456,950	-				+0.3
3,456,950	-				-0.4
3,456,950	-				+1.1
3,456,950	-				+0.1
3,457,007	+				-0.8
3,457,007	+				-0.5
3,457,008	-				+0.9
3,457,008	-				-2.0
3,457,260	+		PFR28_02948	0.44	-0.9
3,457,260	+		PFR28_02948	0.44	-1.7
3,457,261	-		PFR28_02948	0.44	+1.3
3,457,262	+		PFR28_02948	0.44	+0.1
3,457,262	+		PFR28_02948	0.44	+0.9
3,457,262	+		PFR28_02948	0.44	-0.8
3,457,262	+		PFR28_02948	0.44	+0.0
3,457,262	+		PFR28_02948	0.44	-1.3
3,457,262	+		PFR28_02948	0.44	-0.2
3,457,262	+		PFR28_02948	0.44	-2.5
3,457,262	+		PFR28_02948	0.44	+0.5
3,457,262	+		PFR28_02948	0.44	-0.1
3,457,262	+		PFR28_02948	0.44	-0.3
3,457,262	+		PFR28_02948	0.44	-1.2
3,457,262	+		PFR28_02948	0.44	-1.7
3,457,263	-		PFR28_02948	0.44	-0.9
3,457,263	-		PFR28_02948	0.44	+0.6
3,457,263	-		PFR28_02948	0.44	-0.1
3,457,263	-		PFR28_02948	0.44	-0.3
3,457,263	-		PFR28_02948	0.44	-0.9
3,457,263	-		PFR28_02948	0.44	-1.5
3,457,263	-		PFR28_02948	0.44	+1.5
3,457,263	-		PFR28_02948	0.44	-1.2
3,457,263	-		PFR28_02948	0.44	+0.1
3,457,322	+		PFR28_02948	0.54	-0.4
3,457,322	+		PFR28_02948	0.54	+0.9
3,457,322	+		PFR28_02948	0.54	-0.9
3,457,323	-		PFR28_02948	0.54	-1.2
3,457,323	-		PFR28_02948	0.54	-0.2
3,457,323	-		PFR28_02948	0.54	+0.4
3,457,323	-		PFR28_02948	0.54	-0.9
3,457,427	+		PFR28_02948	0.72	-0.9
3,457,427	+		PFR28_02948	0.72	+1.4
3,457,428	-		PFR28_02948	0.73	-1.9
3,457,428	-		PFR28_02948	0.73	-2.0
3,457,452	-		PFR28_02948	0.77	+0.0
3,457,479	-		PFR28_02948	0.81	+0.5
3,457,479	-		PFR28_02948	0.81	+0.7
3,457,549	+				-1.3
3,457,550	-				+0.3
3,457,550	-				-2.0
3,457,550	-				-1.7
3,457,621	-				-0.8
3,457,623	+				-0.2
3,457,624	-				-2.7
3,457,624	-				-0.2
3,457,624	-				+0.5
3,457,689	+				-0.2
3,457,689	+				+0.1
3,457,689	+				+0.9
3,457,689	+				+2.1
3,457,689	+				-0.9
3,457,689	+				-2.0
3,457,689	+				-0.9
3,457,690	-				-0.9
3,457,690	-				-0.8
3,457,690	-				-0.4
3,457,690	-				+0.3
3,457,690	-				-1.8
3,457,690	-				+0.3
3,457,690	-				+1.4
3,457,690	-				+0.1
3,457,690	-				-1.0
3,457,690	-				-2.1
3,457,690	-				-0.2
3,457,690	-				-1.2
3,457,690	-				-0.3
3,457,846	+				+0.0
3,457,846	+				-0.9
3,457,846	+				-1.8
3,457,847	-				-0.5
3,457,854	+				-1.1
3,457,854	+				-0.1
3,457,854	+				+0.5
3,457,854	+				+0.2
3,457,854	+				-1.1
3,457,855	-				+1.4
3,457,855	-				+0.7
3,457,855	-				+1.7
3,457,878	+				-0.9
3,457,878	+				-0.2
3,457,878	+				-1.2
3,457,878	+				+0.8
3,457,879	-				+1.3
3,457,879	-				-1.3
3,457,879	-				-0.2
3,457,879	-				+0.5
3,457,879	-				-0.7