Strain Fitness in Pseudomonas sp. RS175 around PFR28_04822

Experiment: Glycocyamine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04821 and PFR28_04822 overlap by 4 nucleotidesPFR28_04822 and PFR28_04823 overlap by 4 nucleotides PFR28_04821: PFR28_04821 - Multidrug resistance protein MdtE, at 5,509,176 to 5,510,279 _04821 PFR28_04822: PFR28_04822 - Multidrug resistance protein MdtA, at 5,510,276 to 5,511,340 _04822 PFR28_04823: PFR28_04823 - Cobalt-zinc-cadmium resistance protein CzcA, at 5,511,337 to 5,514,417 _04823 Position (kb) 5510 5511 5512Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5509.566 kb on + strand, within PFR28_04821at 5509.567 kb on - strand, within PFR28_04821at 5509.567 kb on - strand, within PFR28_04821at 5509.584 kb on + strand, within PFR28_04821at 5509.584 kb on + strand, within PFR28_04821at 5509.674 kb on + strand, within PFR28_04821at 5509.674 kb on + strand, within PFR28_04821at 5509.674 kb on + strand, within PFR28_04821at 5509.674 kb on + strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.675 kb on - strand, within PFR28_04821at 5509.677 kb on - strand, within PFR28_04821at 5509.806 kb on + strand, within PFR28_04821at 5509.806 kb on + strand, within PFR28_04821at 5509.806 kb on + strand, within PFR28_04821at 5509.806 kb on + strand, within PFR28_04821at 5509.806 kb on + strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5509.807 kb on - strand, within PFR28_04821at 5510.263 kb on + strandat 5510.263 kb on + strandat 5510.263 kb on + strandat 5510.263 kb on + strandat 5510.264 kb on - strandat 5510.264 kb on - strandat 5510.264 kb on - strandat 5510.432 kb on + strand, within PFR28_04822at 5510.432 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.597 kb on + strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.598 kb on - strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.759 kb on + strand, within PFR28_04822at 5510.760 kb on - strand, within PFR28_04822at 5510.760 kb on - strand, within PFR28_04822at 5510.760 kb on - strand, within PFR28_04822at 5510.760 kb on - strand, within PFR28_04822at 5510.889 kb on + strand, within PFR28_04822at 5510.979 kb on + strand, within PFR28_04822at 5511.047 kb on - strand, within PFR28_04822at 5511.394 kb on + strandat 5511.395 kb on - strandat 5511.395 kb on - strandat 5511.433 kb on + strandat 5511.433 kb on + strandat 5511.433 kb on + strandat 5511.433 kb on + strandat 5511.434 kb on - strandat 5511.434 kb on - strandat 5511.434 kb on - strandat 5511.434 kb on - strandat 5511.583 kb on + strandat 5511.583 kb on + strandat 5511.595 kb on + strandat 5511.595 kb on + strandat 5511.595 kb on + strandat 5511.596 kb on - strandat 5511.596 kb on - strandat 5511.596 kb on - strandat 5511.673 kb on + strand, within PFR28_04823at 5511.680 kb on + strand, within PFR28_04823at 5511.680 kb on + strand, within PFR28_04823at 5511.680 kb on + strand, within PFR28_04823at 5511.681 kb on - strand, within PFR28_04823at 5511.681 kb on - strand, within PFR28_04823at 5511.763 kb on + strand, within PFR28_04823at 5511.763 kb on + strand, within PFR28_04823at 5511.775 kb on + strand, within PFR28_04823at 5511.775 kb on + strand, within PFR28_04823at 5511.775 kb on + strand, within PFR28_04823at 5511.775 kb on + strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.776 kb on - strand, within PFR28_04823at 5511.820 kb on + strand, within PFR28_04823at 5511.905 kb on - strand, within PFR28_04823at 5511.905 kb on - strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.038 kb on + strand, within PFR28_04823at 5512.039 kb on - strand, within PFR28_04823at 5512.039 kb on - strand, within PFR28_04823at 5512.039 kb on - strand, within PFR28_04823at 5512.039 kb on - strand, within PFR28_04823at 5512.142 kb on - strand, within PFR28_04823

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycocyamine 10 mM (C)
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5,509,566 + PFR28_04821 0.35 +0.1
5,509,567 - PFR28_04821 0.35 +1.2
5,509,567 - PFR28_04821 0.35 +1.1
5,509,584 + PFR28_04821 0.37 +0.2
5,509,584 + PFR28_04821 0.37 +0.4
5,509,674 + PFR28_04821 0.45 -0.2
5,509,674 + PFR28_04821 0.45 +0.5
5,509,674 + PFR28_04821 0.45 +0.4
5,509,674 + PFR28_04821 0.45 +0.4
5,509,675 - PFR28_04821 0.45 -0.2
5,509,675 - PFR28_04821 0.45 +1.1
5,509,675 - PFR28_04821 0.45 +0.1
5,509,675 - PFR28_04821 0.45 -0.2
5,509,675 - PFR28_04821 0.45 +0.7
5,509,675 - PFR28_04821 0.45 -0.4
5,509,677 - PFR28_04821 0.45 -0.5
5,509,806 + PFR28_04821 0.57 -0.3
5,509,806 + PFR28_04821 0.57 -0.7
5,509,806 + PFR28_04821 0.57 +0.5
5,509,806 + PFR28_04821 0.57 -0.3
5,509,806 + PFR28_04821 0.57 +0.5
5,509,807 - PFR28_04821 0.57 -0.3
5,509,807 - PFR28_04821 0.57 -0.5
5,509,807 - PFR28_04821 0.57 +0.2
5,509,807 - PFR28_04821 0.57 +0.1
5,509,807 - PFR28_04821 0.57 +1.8
5,509,807 - PFR28_04821 0.57 -0.7
5,509,807 - PFR28_04821 0.57 +0.3
5,510,263 + +0.7
5,510,263 + +0.6
5,510,263 + +0.2
5,510,263 + +0.0
5,510,264 - +0.9
5,510,264 - -1.7
5,510,264 - -0.2
5,510,432 + PFR28_04822 0.15 +1.3
5,510,432 + PFR28_04822 0.15 -1.2
5,510,597 + PFR28_04822 0.30 -0.2
5,510,597 + PFR28_04822 0.30 +1.8
5,510,597 + PFR28_04822 0.30 -0.9
5,510,597 + PFR28_04822 0.30 +1.1
5,510,597 + PFR28_04822 0.30 +0.9
5,510,597 + PFR28_04822 0.30 +0.3
5,510,597 + PFR28_04822 0.30 -0.7
5,510,597 + PFR28_04822 0.30 +0.4
5,510,597 + PFR28_04822 0.30 +0.6
5,510,598 - PFR28_04822 0.30 -0.0
5,510,598 - PFR28_04822 0.30 +0.7
5,510,598 - PFR28_04822 0.30 -0.2
5,510,598 - PFR28_04822 0.30 -0.3
5,510,598 - PFR28_04822 0.30 +0.5
5,510,598 - PFR28_04822 0.30 -0.5
5,510,598 - PFR28_04822 0.30 -0.8
5,510,598 - PFR28_04822 0.30 -2.3
5,510,598 - PFR28_04822 0.30 -0.0
5,510,598 - PFR28_04822 0.30 +0.4
5,510,759 + PFR28_04822 0.45 +0.8
5,510,759 + PFR28_04822 0.45 -0.5
5,510,759 + PFR28_04822 0.45 +2.2
5,510,759 + PFR28_04822 0.45 -1.0
5,510,759 + PFR28_04822 0.45 +0.9
5,510,759 + PFR28_04822 0.45 -0.1
5,510,760 - PFR28_04822 0.45 -2.1
5,510,760 - PFR28_04822 0.45 -0.6
5,510,760 - PFR28_04822 0.45 +0.2
5,510,760 - PFR28_04822 0.45 +0.2
5,510,889 + PFR28_04822 0.58 -0.9
5,510,979 + PFR28_04822 0.66 -0.9
5,511,047 - PFR28_04822 0.72 +0.5
5,511,394 + -0.3
5,511,395 - -1.2
5,511,395 - +0.0
5,511,433 + -0.7
5,511,433 + -1.3
5,511,433 + +0.9
5,511,433 + -2.0
5,511,434 - -0.8
5,511,434 - +0.5
5,511,434 - +0.1
5,511,434 - +0.5
5,511,583 + -0.9
5,511,583 + -1.0
5,511,595 + +0.9
5,511,595 + +0.7
5,511,595 + +0.6
5,511,596 - +3.8
5,511,596 - -0.2
5,511,596 - -0.4
5,511,673 + PFR28_04823 0.11 +0.6
5,511,680 + PFR28_04823 0.11 -2.1
5,511,680 + PFR28_04823 0.11 -0.3
5,511,680 + PFR28_04823 0.11 +0.2
5,511,681 - PFR28_04823 0.11 -0.7
5,511,681 - PFR28_04823 0.11 -0.5
5,511,763 + PFR28_04823 0.14 +0.1
5,511,763 + PFR28_04823 0.14 +0.4
5,511,775 + PFR28_04823 0.14 -0.7
5,511,775 + PFR28_04823 0.14 +0.2
5,511,775 + PFR28_04823 0.14 -1.6
5,511,775 + PFR28_04823 0.14 -0.3
5,511,776 - PFR28_04823 0.14 +0.2
5,511,776 - PFR28_04823 0.14 -0.4
5,511,776 - PFR28_04823 0.14 +0.4
5,511,776 - PFR28_04823 0.14 -0.3
5,511,776 - PFR28_04823 0.14 +0.8
5,511,776 - PFR28_04823 0.14 -1.2
5,511,820 + PFR28_04823 0.16 +0.3
5,511,905 - PFR28_04823 0.18 -0.9
5,511,905 - PFR28_04823 0.18 -1.8
5,512,038 + PFR28_04823 0.23 -0.2
5,512,038 + PFR28_04823 0.23 -0.8
5,512,038 + PFR28_04823 0.23 -1.4
5,512,038 + PFR28_04823 0.23 +0.1
5,512,038 + PFR28_04823 0.23 -0.8
5,512,038 + PFR28_04823 0.23 -0.7
5,512,038 + PFR28_04823 0.23 -1.5
5,512,038 + PFR28_04823 0.23 -0.4
5,512,038 + PFR28_04823 0.23 +2.2
5,512,038 + PFR28_04823 0.23 -1.4
5,512,038 + PFR28_04823 0.23 -0.3
5,512,038 + PFR28_04823 0.23 -0.2
5,512,038 + PFR28_04823 0.23 -0.1
5,512,039 - PFR28_04823 0.23 +0.0
5,512,039 - PFR28_04823 0.23 -1.5
5,512,039 - PFR28_04823 0.23 +0.1
5,512,039 - PFR28_04823 0.23 +1.6
5,512,142 - PFR28_04823 0.26 -0.4

Or see this region's nucleotide sequence