Experiment: Glycocyamine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04618 and PFR28_04619 overlap by 8 nucleotides PFR28_04619 and PFR28_04620 overlap by 1 nucleotides PFR28_04620 and PFR28_04621 are separated by 66 nucleotides
PFR28_04618: PFR28_04618 - High-affinity zinc uptake system membrane protein ZnuB, at 5,274,146 to 5,274,934
_04618
PFR28_04619: PFR28_04619 - Zinc import ATP-binding protein ZnuC, at 5,274,927 to 5,275,709
_04619
PFR28_04620: PFR28_04620 - Zinc uptake regulation protein, at 5,275,709 to 5,276,191
_04620
PFR28_04621: PFR28_04621 - High-affinity zinc uptake system protein ZnuA, at 5,276,258 to 5,277,184
_04621
Position (kb) 5275
5276
5277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5274.837 kb on + strand, within PFR28_04618 at 5274.838 kb on - strand, within PFR28_04618 at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.963 kb on - strand at 5274.963 kb on - strand at 5274.963 kb on - strand at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.186 kb on - strand, within PFR28_04619 at 5275.228 kb on + strand, within PFR28_04619 at 5275.228 kb on + strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.278 kb on + strand, within PFR28_04619 at 5275.493 kb on + strand, within PFR28_04619 at 5275.493 kb on + strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.640 kb on + strand at 5276.025 kb on + strand, within PFR28_04620 at 5276.025 kb on + strand, within PFR28_04620 at 5276.025 kb on + strand, within PFR28_04620 at 5276.025 kb on + strand, within PFR28_04620 at 5276.026 kb on - strand, within PFR28_04620 at 5276.026 kb on - strand, within PFR28_04620 at 5276.026 kb on - strand, within PFR28_04620 at 5276.182 kb on + strand at 5276.183 kb on - strand at 5276.183 kb on - strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.185 kb on + strand at 5276.186 kb on - strand at 5276.186 kb on - strand at 5276.186 kb on - strand at 5276.186 kb on - strand at 5276.220 kb on + strand at 5276.223 kb on + strand at 5276.224 kb on - strand at 5276.224 kb on - strand at 5276.224 kb on - strand at 5276.438 kb on + strand, within PFR28_04621 at 5276.439 kb on - strand, within PFR28_04621 at 5276.439 kb on - strand, within PFR28_04621 at 5276.460 kb on + strand, within PFR28_04621 at 5276.478 kb on + strand, within PFR28_04621 at 5276.478 kb on + strand, within PFR28_04621 at 5276.479 kb on - strand, within PFR28_04621 at 5276.479 kb on - strand, within PFR28_04621 at 5276.489 kb on + strand, within PFR28_04621 at 5276.490 kb on - strand, within PFR28_04621 at 5276.858 kb on + strand, within PFR28_04621 at 5276.858 kb on + strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.885 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5277.101 kb on + strand at 5277.102 kb on - strand at 5277.102 kb on - strand at 5277.103 kb on + strand at 5277.103 kb on + strand at 5277.104 kb on - strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.183 kb on - strand at 5277.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 10 mM (C) remove 5,274,837 + PFR28_04618 0.88 -0.9 5,274,838 - PFR28_04618 0.88 +0.8 5,274,915 + -3.0 5,274,915 + -0.0 5,274,915 + -0.4 5,274,915 + -0.3 5,274,915 + +1.8 5,274,915 + +0.1 5,274,915 + +0.2 5,274,915 + +1.1 5,274,915 + +0.0 5,274,915 + +1.6 5,274,915 + -0.1 5,274,915 + +0.9 5,274,915 + -1.9 5,274,915 + +0.2 5,274,915 + -0.4 5,274,916 - +0.8 5,274,916 - +0.3 5,274,916 - -1.8 5,274,916 - -0.7 5,274,916 - -1.5 5,274,916 - +0.2 5,274,916 - +1.2 5,274,916 - +0.1 5,274,916 - -0.2 5,274,916 - -0.6 5,274,916 - +0.5 5,274,916 - -0.2 5,274,916 - -0.7 5,274,916 - +0.1 5,274,916 - -0.7 5,274,916 - +0.1 5,274,916 - +0.2 5,274,916 - +0.8 5,274,962 + +0.1 5,274,962 + -0.2 5,274,962 + +0.2 5,274,962 + -0.3 5,274,962 + -0.5 5,274,963 - -0.2 5,274,963 - +0.9 5,274,963 - +2.4 5,275,027 + PFR28_04619 0.13 +0.6 5,275,027 + PFR28_04619 0.13 -1.8 5,275,027 + PFR28_04619 0.13 -1.0 5,275,027 + PFR28_04619 0.13 +0.1 5,275,028 - PFR28_04619 0.13 +0.7 5,275,028 - PFR28_04619 0.13 +0.8 5,275,028 - PFR28_04619 0.13 +0.5 5,275,028 - PFR28_04619 0.13 -0.5 5,275,028 - PFR28_04619 0.13 +1.5 5,275,028 - PFR28_04619 0.13 +1.0 5,275,028 - PFR28_04619 0.13 +1.2 5,275,028 - PFR28_04619 0.13 -0.7 5,275,185 + PFR28_04619 0.33 +0.0 5,275,185 + PFR28_04619 0.33 -1.5 5,275,185 + PFR28_04619 0.33 -0.6 5,275,185 + PFR28_04619 0.33 -0.2 5,275,186 - PFR28_04619 0.33 +0.8 5,275,228 + PFR28_04619 0.38 -1.4 5,275,228 + PFR28_04619 0.38 -1.1 5,275,229 - PFR28_04619 0.39 -0.7 5,275,229 - PFR28_04619 0.39 -0.1 5,275,229 - PFR28_04619 0.39 +0.6 5,275,229 - PFR28_04619 0.39 +1.5 5,275,278 + PFR28_04619 0.45 -0.1 5,275,493 + PFR28_04619 0.72 -2.6 5,275,493 + PFR28_04619 0.72 +0.6 5,275,494 - PFR28_04619 0.72 +0.0 5,275,494 - PFR28_04619 0.72 +0.1 5,275,494 - PFR28_04619 0.72 -0.9 5,275,495 + PFR28_04619 0.73 -0.0 5,275,495 + PFR28_04619 0.73 -1.5 5,275,495 + PFR28_04619 0.73 -0.2 5,275,495 + PFR28_04619 0.73 -0.5 5,275,496 - PFR28_04619 0.73 +0.4 5,275,496 - PFR28_04619 0.73 +0.2 5,275,496 - PFR28_04619 0.73 -0.6 5,275,496 - PFR28_04619 0.73 -1.3 5,275,496 - PFR28_04619 0.73 -0.4 5,275,496 - PFR28_04619 0.73 +0.4 5,275,496 - PFR28_04619 0.73 +1.8 5,275,496 - PFR28_04619 0.73 -1.0 5,275,496 - PFR28_04619 0.73 -1.3 5,275,496 - PFR28_04619 0.73 +1.0 5,275,640 + -1.2 5,276,025 + PFR28_04620 0.65 -1.0 5,276,025 + PFR28_04620 0.65 -0.5 5,276,025 + PFR28_04620 0.65 -0.9 5,276,025 + PFR28_04620 0.65 -0.9 5,276,026 - PFR28_04620 0.66 -0.5 5,276,026 - PFR28_04620 0.66 +0.8 5,276,026 - PFR28_04620 0.66 +0.0 5,276,182 + +1.2 5,276,183 - -0.0 5,276,183 - -1.4 5,276,185 + +0.8 5,276,185 + -1.3 5,276,185 + -1.2 5,276,185 + +1.3 5,276,185 + +0.3 5,276,185 + -0.7 5,276,185 + -0.5 5,276,185 + +1.4 5,276,186 - +1.8 5,276,186 - -0.6 5,276,186 - -1.4 5,276,186 - -1.1 5,276,220 + +0.2 5,276,223 + -0.6 5,276,224 - -0.6 5,276,224 - +0.6 5,276,224 - +0.4 5,276,438 + PFR28_04621 0.19 +0.1 5,276,439 - PFR28_04621 0.20 -1.0 5,276,439 - PFR28_04621 0.20 -0.9 5,276,460 + PFR28_04621 0.22 -2.3 5,276,478 + PFR28_04621 0.24 -2.0 5,276,478 + PFR28_04621 0.24 -0.2 5,276,479 - PFR28_04621 0.24 +1.1 5,276,479 - PFR28_04621 0.24 -2.5 5,276,489 + PFR28_04621 0.25 +0.8 5,276,490 - PFR28_04621 0.25 -0.1 5,276,858 + PFR28_04621 0.65 -0.2 5,276,858 + PFR28_04621 0.65 +0.8 5,276,859 - PFR28_04621 0.65 -1.5 5,276,859 - PFR28_04621 0.65 -0.9 5,276,859 - PFR28_04621 0.65 +2.0 5,276,859 - PFR28_04621 0.65 -1.8 5,276,859 - PFR28_04621 0.65 -0.6 5,276,859 - PFR28_04621 0.65 +0.6 5,276,859 - PFR28_04621 0.65 -0.7 5,276,885 + PFR28_04621 0.68 +1.0 5,276,900 + PFR28_04621 0.69 +0.9 5,276,900 + PFR28_04621 0.69 +2.1 5,276,900 + PFR28_04621 0.69 -0.1 5,276,900 + PFR28_04621 0.69 +0.2 5,276,900 + PFR28_04621 0.69 -0.3 5,276,900 + PFR28_04621 0.69 +0.1 5,276,901 - PFR28_04621 0.69 -2.3 5,276,901 - PFR28_04621 0.69 +0.7 5,276,901 - PFR28_04621 0.69 -0.0 5,276,901 - PFR28_04621 0.69 +0.2 5,277,101 + -1.1 5,277,102 - +0.1 5,277,102 - +0.8 5,277,103 + -1.2 5,277,103 + -0.7 5,277,104 - -0.7 5,277,180 + -1.1 5,277,180 + +0.1 5,277,180 + +0.5 5,277,180 + +1.6 5,277,181 - -0.2 5,277,181 - -2.0 5,277,181 - -0.7 5,277,181 - +1.5 5,277,181 - +0.5 5,277,181 - +1.8 5,277,181 - -0.1 5,277,182 + -0.5 5,277,182 + -0.1 5,277,182 + +0.2 5,277,182 + -1.3 5,277,183 - -1.4 5,277,183 - -0.8
Or see this region's nucleotide sequence