Experiment: Glycocyamine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02366 and PFR28_02367 are separated by 13 nucleotides PFR28_02367 and PFR28_02368 are separated by 202 nucleotides PFR28_02368 and PFR28_02369 are separated by 80 nucleotides PFR28_02369 and PFR28_02370 are separated by 144 nucleotides
PFR28_02366: PFR28_02366 - HTH-type transcriptional activator RhaS, at 2,827,467 to 2,828,291
_02366
PFR28_02367: PFR28_02367 - Cysteine/O-acetylserine efflux protein, at 2,828,305 to 2,828,892
_02367
PFR28_02368: PFR28_02368 - Trk system potassium uptake protein TrkI, at 2,829,095 to 2,830,549
_02368
PFR28_02369: PFR28_02369 - hypothetical protein, at 2,830,630 to 2,831,145
_02369
PFR28_02370: PFR28_02370 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 2,831,290 to 2,832,372
_02370
Position (kb)
2829
2830
2831 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2828.280 kb on + strand at 2828.321 kb on + strand at 2828.321 kb on + strand at 2828.322 kb on - strand at 2828.322 kb on - strand at 2828.417 kb on + strand, within PFR28_02367 at 2828.441 kb on + strand, within PFR28_02367 at 2828.442 kb on - strand, within PFR28_02367 at 2828.442 kb on - strand, within PFR28_02367 at 2828.442 kb on - strand, within PFR28_02367 at 2828.456 kb on + strand, within PFR28_02367 at 2828.457 kb on - strand, within PFR28_02367 at 2828.457 kb on - strand, within PFR28_02367 at 2828.844 kb on + strand at 2828.845 kb on - strand at 2828.881 kb on - strand at 2828.897 kb on + strand at 2828.897 kb on + strand at 2828.898 kb on - strand at 2828.898 kb on - strand at 2828.898 kb on - strand at 2828.898 kb on - strand at 2828.931 kb on + strand at 2828.932 kb on - strand at 2828.932 kb on - strand at 2828.932 kb on - strand at 2828.952 kb on + strand at 2829.049 kb on + strand at 2829.063 kb on + strand at 2829.194 kb on + strand at 2829.195 kb on - strand at 2829.195 kb on - strand at 2829.195 kb on - strand at 2829.297 kb on + strand, within PFR28_02368 at 2829.298 kb on - strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.314 kb on + strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.315 kb on - strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.644 kb on + strand, within PFR28_02368 at 2829.645 kb on - strand, within PFR28_02368 at 2829.645 kb on - strand, within PFR28_02368 at 2829.645 kb on - strand, within PFR28_02368 at 2829.645 kb on - strand, within PFR28_02368 at 2829.645 kb on - strand, within PFR28_02368 at 2829.660 kb on - strand, within PFR28_02368 at 2829.853 kb on + strand, within PFR28_02368 at 2829.854 kb on - strand, within PFR28_02368 at 2829.854 kb on - strand, within PFR28_02368 at 2829.854 kb on - strand, within PFR28_02368 at 2829.860 kb on + strand, within PFR28_02368 at 2829.860 kb on + strand, within PFR28_02368 at 2829.861 kb on - strand, within PFR28_02368 at 2829.861 kb on - strand, within PFR28_02368 at 2829.940 kb on + strand, within PFR28_02368 at 2829.940 kb on + strand, within PFR28_02368 at 2829.940 kb on + strand, within PFR28_02368 at 2829.940 kb on + strand, within PFR28_02368 at 2829.941 kb on - strand, within PFR28_02368 at 2829.941 kb on - strand, within PFR28_02368 at 2829.941 kb on - strand, within PFR28_02368 at 2829.941 kb on - strand, within PFR28_02368 at 2830.007 kb on - strand, within PFR28_02368 at 2830.007 kb on - strand, within PFR28_02368 at 2830.064 kb on + strand, within PFR28_02368 at 2830.065 kb on - strand, within PFR28_02368 at 2830.065 kb on - strand, within PFR28_02368 at 2830.065 kb on - strand, within PFR28_02368 at 2830.103 kb on + strand, within PFR28_02368 at 2830.103 kb on + strand, within PFR28_02368 at 2830.103 kb on + strand, within PFR28_02368 at 2830.103 kb on + strand, within PFR28_02368 at 2830.104 kb on - strand, within PFR28_02368 at 2830.104 kb on - strand, within PFR28_02368 at 2830.104 kb on - strand, within PFR28_02368 at 2830.104 kb on - strand, within PFR28_02368 at 2830.518 kb on + strand at 2830.518 kb on + strand at 2830.519 kb on - strand at 2830.544 kb on + strand at 2830.545 kb on - strand at 2830.545 kb on - strand at 2830.545 kb on - strand at 2830.581 kb on + strand at 2830.581 kb on + strand at 2830.582 kb on - strand at 2830.582 kb on - strand at 2830.980 kb on + strand, within PFR28_02369 at 2830.980 kb on + strand, within PFR28_02369 at 2830.980 kb on + strand, within PFR28_02369 at 2831.043 kb on - strand, within PFR28_02369 at 2831.043 kb on - strand, within PFR28_02369 at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.130 kb on + strand at 2831.131 kb on - strand at 2831.131 kb on - strand at 2831.131 kb on - strand at 2831.133 kb on + strand at 2831.133 kb on + strand at 2831.133 kb on + strand at 2831.133 kb on + strand at 2831.133 kb on + strand at 2831.134 kb on - strand at 2831.134 kb on - strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.277 kb on + strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.278 kb on - strand at 2831.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 10 mM (C) remove 2,828,280 + -0.2 2,828,321 + +0.1 2,828,321 + -0.9 2,828,322 - -0.9 2,828,322 - +0.5 2,828,417 + PFR28_02367 0.19 +0.6 2,828,441 + PFR28_02367 0.23 -1.2 2,828,442 - PFR28_02367 0.23 +1.2 2,828,442 - PFR28_02367 0.23 +0.8 2,828,442 - PFR28_02367 0.23 +1.4 2,828,456 + PFR28_02367 0.26 +1.1 2,828,457 - PFR28_02367 0.26 -1.1 2,828,457 - PFR28_02367 0.26 -1.4 2,828,844 + -0.1 2,828,845 - +2.1 2,828,881 - +1.1 2,828,897 + +0.4 2,828,897 + -1.7 2,828,898 - -0.1 2,828,898 - +1.3 2,828,898 - +0.7 2,828,898 - -0.2 2,828,931 + -1.7 2,828,932 - -0.8 2,828,932 - +0.5 2,828,932 - +0.4 2,828,952 + +1.7 2,829,049 + -0.1 2,829,063 + -0.3 2,829,194 + -1.0 2,829,195 - -0.7 2,829,195 - +0.1 2,829,195 - -1.3 2,829,297 + PFR28_02368 0.14 -0.0 2,829,298 - PFR28_02368 0.14 -1.3 2,829,314 + PFR28_02368 0.15 -0.6 2,829,314 + PFR28_02368 0.15 -0.4 2,829,314 + PFR28_02368 0.15 +0.2 2,829,314 + PFR28_02368 0.15 +0.0 2,829,314 + PFR28_02368 0.15 -1.1 2,829,314 + PFR28_02368 0.15 -0.3 2,829,314 + PFR28_02368 0.15 -0.1 2,829,314 + PFR28_02368 0.15 -0.6 2,829,314 + PFR28_02368 0.15 +0.1 2,829,314 + PFR28_02368 0.15 +0.3 2,829,315 - PFR28_02368 0.15 +0.5 2,829,315 - PFR28_02368 0.15 +2.1 2,829,315 - PFR28_02368 0.15 +0.1 2,829,315 - PFR28_02368 0.15 -0.8 2,829,315 - PFR28_02368 0.15 -0.8 2,829,315 - PFR28_02368 0.15 -1.3 2,829,315 - PFR28_02368 0.15 -1.2 2,829,315 - PFR28_02368 0.15 -1.0 2,829,315 - PFR28_02368 0.15 -0.5 2,829,315 - PFR28_02368 0.15 -1.8 2,829,315 - PFR28_02368 0.15 -0.6 2,829,644 + PFR28_02368 0.38 +0.1 2,829,644 + PFR28_02368 0.38 -1.2 2,829,644 + PFR28_02368 0.38 -0.3 2,829,644 + PFR28_02368 0.38 -0.5 2,829,644 + PFR28_02368 0.38 +1.1 2,829,644 + PFR28_02368 0.38 -1.1 2,829,644 + PFR28_02368 0.38 -0.7 2,829,644 + PFR28_02368 0.38 +0.5 2,829,644 + PFR28_02368 0.38 +0.2 2,829,645 - PFR28_02368 0.38 -2.1 2,829,645 - PFR28_02368 0.38 -0.1 2,829,645 - PFR28_02368 0.38 +1.4 2,829,645 - PFR28_02368 0.38 -0.5 2,829,645 - PFR28_02368 0.38 -0.7 2,829,660 - PFR28_02368 0.39 -1.1 2,829,853 + PFR28_02368 0.52 +0.7 2,829,854 - PFR28_02368 0.52 -1.2 2,829,854 - PFR28_02368 0.52 +0.4 2,829,854 - PFR28_02368 0.52 -1.2 2,829,860 + PFR28_02368 0.53 -0.9 2,829,860 + PFR28_02368 0.53 +0.4 2,829,861 - PFR28_02368 0.53 +0.4 2,829,861 - PFR28_02368 0.53 +0.4 2,829,940 + PFR28_02368 0.58 +0.6 2,829,940 + PFR28_02368 0.58 +1.1 2,829,940 + PFR28_02368 0.58 -1.4 2,829,940 + PFR28_02368 0.58 -0.2 2,829,941 - PFR28_02368 0.58 +1.7 2,829,941 - PFR28_02368 0.58 -0.8 2,829,941 - PFR28_02368 0.58 +0.3 2,829,941 - PFR28_02368 0.58 -0.9 2,830,007 - PFR28_02368 0.63 +0.2 2,830,007 - PFR28_02368 0.63 +0.2 2,830,064 + PFR28_02368 0.67 +0.7 2,830,065 - PFR28_02368 0.67 +1.1 2,830,065 - PFR28_02368 0.67 -0.6 2,830,065 - PFR28_02368 0.67 -0.7 2,830,103 + PFR28_02368 0.69 -0.5 2,830,103 + PFR28_02368 0.69 -0.2 2,830,103 + PFR28_02368 0.69 -0.8 2,830,103 + PFR28_02368 0.69 -0.3 2,830,104 - PFR28_02368 0.69 +1.5 2,830,104 - PFR28_02368 0.69 +1.0 2,830,104 - PFR28_02368 0.69 +0.1 2,830,104 - PFR28_02368 0.69 -0.2 2,830,518 + -1.4 2,830,518 + -1.4 2,830,519 - +0.8 2,830,544 + +0.6 2,830,545 - -0.2 2,830,545 - +1.4 2,830,545 - +0.8 2,830,581 + -0.4 2,830,581 + -0.2 2,830,582 - -0.7 2,830,582 - -1.0 2,830,980 + PFR28_02369 0.68 +0.8 2,830,980 + PFR28_02369 0.68 +1.1 2,830,980 + PFR28_02369 0.68 -1.9 2,831,043 - PFR28_02369 0.80 -0.9 2,831,043 - PFR28_02369 0.80 -0.4 2,831,130 + +0.9 2,831,130 + +0.1 2,831,130 + +2.5 2,831,130 + -0.0 2,831,130 + -0.7 2,831,130 + -0.7 2,831,130 + +0.2 2,831,130 + +0.0 2,831,131 - -0.4 2,831,131 - -0.0 2,831,131 - +0.2 2,831,133 + +0.6 2,831,133 + -1.2 2,831,133 + +1.7 2,831,133 + +1.8 2,831,133 + -0.2 2,831,134 - -2.2 2,831,134 - -0.8 2,831,277 + +0.4 2,831,277 + -0.7 2,831,277 + -0.2 2,831,277 + +0.8 2,831,277 + -0.4 2,831,277 + -0.2 2,831,277 + -0.1 2,831,277 + -0.4 2,831,277 + -0.4 2,831,277 + -0.4 2,831,277 + -2.1 2,831,278 - +1.1 2,831,278 - +0.1 2,831,278 - -0.4 2,831,278 - -1.3 2,831,278 - +0.2 2,831,278 - +0.8 2,831,278 - -0.2 2,831,278 - +0.4 2,831,363 - -0.1
Or see this region's nucleotide sequence