Experiment: Glycocyamine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04853 and PFR28_04854 are separated by 3 nucleotides PFR28_04854 and PFR28_04855 overlap by 1 nucleotides PFR28_04855 and PFR28_04856 are separated by 306 nucleotides
PFR28_04853: PFR28_04853 - L-cystine import ATP-binding protein TcyC, at 5,545,009 to 5,545,770
_04853
PFR28_04854: PFR28_04854 - L-cystine transport system permease protein YecS, at 5,545,774 to 5,546,439
_04854
PFR28_04855: PFR28_04855 - L-cystine-binding protein FliY, at 5,546,439 to 5,547,239
_04855
PFR28_04856: PFR28_04856 - D-cysteine desulfhydrase, at 5,547,546 to 5,548,538
_04856
Position (kb) 5546
5547
5548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5545.723 kb on + strand at 5545.854 kb on - strand, within PFR28_04854 at 5545.854 kb on - strand, within PFR28_04854 at 5545.854 kb on - strand, within PFR28_04854 at 5545.854 kb on - strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.874 kb on + strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5545.875 kb on - strand, within PFR28_04854 at 5546.061 kb on + strand, within PFR28_04854 at 5546.135 kb on + strand, within PFR28_04854 at 5546.135 kb on + strand, within PFR28_04854 at 5546.213 kb on + strand, within PFR28_04854 at 5546.213 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.216 kb on + strand, within PFR28_04854 at 5546.217 kb on - strand, within PFR28_04854 at 5546.217 kb on - strand, within PFR28_04854 at 5546.217 kb on - strand, within PFR28_04854 at 5546.217 kb on - strand, within PFR28_04854 at 5546.217 kb on - strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.267 kb on + strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.268 kb on - strand, within PFR28_04854 at 5546.378 kb on + strand at 5546.378 kb on + strand at 5546.378 kb on + strand at 5546.378 kb on + strand at 5546.379 kb on - strand at 5546.379 kb on - strand at 5546.379 kb on - strand at 5546.379 kb on - strand at 5546.381 kb on + strand at 5546.381 kb on + strand at 5546.382 kb on - strand at 5546.440 kb on + strand at 5546.441 kb on - strand at 5546.441 kb on - strand at 5546.464 kb on + strand at 5546.489 kb on + strand at 5546.627 kb on - strand, within PFR28_04855 at 5546.660 kb on + strand, within PFR28_04855 at 5546.661 kb on - strand, within PFR28_04855 at 5546.710 kb on + strand, within PFR28_04855 at 5546.711 kb on - strand, within PFR28_04855 at 5546.711 kb on - strand, within PFR28_04855 at 5546.711 kb on - strand, within PFR28_04855 at 5546.733 kb on + strand, within PFR28_04855 at 5546.733 kb on + strand, within PFR28_04855 at 5546.745 kb on + strand, within PFR28_04855 at 5546.745 kb on + strand, within PFR28_04855 at 5546.758 kb on + strand, within PFR28_04855 at 5546.758 kb on + strand, within PFR28_04855 at 5546.759 kb on - strand, within PFR28_04855 at 5546.759 kb on - strand, within PFR28_04855 at 5546.789 kb on + strand, within PFR28_04855 at 5546.844 kb on + strand, within PFR28_04855 at 5546.845 kb on - strand, within PFR28_04855 at 5546.845 kb on - strand, within PFR28_04855 at 5546.845 kb on - strand, within PFR28_04855 at 5546.872 kb on + strand, within PFR28_04855 at 5546.872 kb on + strand, within PFR28_04855 at 5546.872 kb on + strand, within PFR28_04855 at 5546.873 kb on - strand, within PFR28_04855 at 5546.873 kb on - strand, within PFR28_04855 at 5546.873 kb on - strand, within PFR28_04855 at 5546.873 kb on - strand, within PFR28_04855 at 5546.920 kb on - strand, within PFR28_04855 at 5547.091 kb on + strand, within PFR28_04855 at 5547.091 kb on + strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.092 kb on - strand, within PFR28_04855 at 5547.222 kb on + strand at 5547.222 kb on + strand at 5547.222 kb on + strand at 5547.222 kb on + strand at 5547.223 kb on - strand at 5547.223 kb on - strand at 5547.260 kb on + strand at 5547.261 kb on - strand at 5547.261 kb on - strand at 5547.270 kb on + strand at 5547.270 kb on + strand at 5547.270 kb on + strand at 5547.285 kb on - strand at 5547.285 kb on - strand at 5547.285 kb on - strand at 5547.285 kb on - strand at 5547.285 kb on - strand at 5547.291 kb on + strand at 5547.371 kb on + strand at 5547.371 kb on + strand at 5547.372 kb on - strand at 5547.372 kb on - strand at 5547.372 kb on - strand at 5547.372 kb on - strand at 5547.372 kb on - strand at 5547.372 kb on - strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.373 kb on + strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.374 kb on - strand at 5547.400 kb on - strand at 5547.416 kb on + strand at 5547.416 kb on + strand at 5547.417 kb on - strand at 5547.418 kb on + strand at 5547.419 kb on - strand at 5547.419 kb on - strand at 5547.562 kb on + strand at 5547.562 kb on + strand at 5547.563 kb on - strand at 5547.563 kb on - strand at 5547.605 kb on + strand at 5547.605 kb on + strand at 5547.605 kb on + strand at 5547.668 kb on + strand, within PFR28_04856 at 5547.670 kb on + strand, within PFR28_04856 at 5547.670 kb on + strand, within PFR28_04856 at 5547.670 kb on + strand, within PFR28_04856 at 5547.670 kb on + strand, within PFR28_04856 at 5547.671 kb on - strand, within PFR28_04856 at 5547.671 kb on - strand, within PFR28_04856 at 5547.671 kb on - strand, within PFR28_04856 at 5547.763 kb on + strand, within PFR28_04856 at 5547.764 kb on - strand, within PFR28_04856 at 5547.764 kb on - strand, within PFR28_04856 at 5548.033 kb on + strand, within PFR28_04856 at 5548.033 kb on + strand, within PFR28_04856 at 5548.033 kb on + strand, within PFR28_04856 at 5548.034 kb on - strand, within PFR28_04856 at 5548.034 kb on - strand, within PFR28_04856 at 5548.034 kb on - strand, within PFR28_04856 at 5548.034 kb on - strand, within PFR28_04856 at 5548.034 kb on - strand, within PFR28_04856 at 5548.078 kb on + strand, within PFR28_04856 at 5548.079 kb on - strand, within PFR28_04856 at 5548.210 kb on + strand, within PFR28_04856 at 5548.210 kb on + strand, within PFR28_04856 at 5548.210 kb on + strand, within PFR28_04856 at 5548.211 kb on - strand, within PFR28_04856 at 5548.211 kb on - strand, within PFR28_04856 at 5548.211 kb on - strand, within PFR28_04856
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 10 mM (C) remove 5,545,723 + -0.5 5,545,854 - PFR28_04854 0.12 +0.9 5,545,854 - PFR28_04854 0.12 +0.6 5,545,854 - PFR28_04854 0.12 +0.4 5,545,854 - PFR28_04854 0.12 -0.8 5,545,874 + PFR28_04854 0.15 -0.2 5,545,874 + PFR28_04854 0.15 -0.5 5,545,874 + PFR28_04854 0.15 -0.2 5,545,874 + PFR28_04854 0.15 +1.0 5,545,874 + PFR28_04854 0.15 -0.1 5,545,874 + PFR28_04854 0.15 -0.4 5,545,874 + PFR28_04854 0.15 +0.4 5,545,874 + PFR28_04854 0.15 -0.5 5,545,874 + PFR28_04854 0.15 +0.0 5,545,874 + PFR28_04854 0.15 -1.8 5,545,874 + PFR28_04854 0.15 -0.6 5,545,874 + PFR28_04854 0.15 -0.9 5,545,874 + PFR28_04854 0.15 +1.0 5,545,875 - PFR28_04854 0.15 -1.6 5,545,875 - PFR28_04854 0.15 -0.4 5,545,875 - PFR28_04854 0.15 -0.3 5,545,875 - PFR28_04854 0.15 -0.0 5,545,875 - PFR28_04854 0.15 -1.5 5,545,875 - PFR28_04854 0.15 -0.8 5,545,875 - PFR28_04854 0.15 +0.0 5,545,875 - PFR28_04854 0.15 -2.4 5,545,875 - PFR28_04854 0.15 -0.3 5,545,875 - PFR28_04854 0.15 +0.1 5,545,875 - PFR28_04854 0.15 +0.0 5,546,061 + PFR28_04854 0.43 +2.6 5,546,135 + PFR28_04854 0.54 -0.3 5,546,135 + PFR28_04854 0.54 -0.3 5,546,213 + PFR28_04854 0.66 +0.0 5,546,213 + PFR28_04854 0.66 +1.6 5,546,216 + PFR28_04854 0.66 +1.0 5,546,216 + PFR28_04854 0.66 -0.3 5,546,216 + PFR28_04854 0.66 -1.2 5,546,216 + PFR28_04854 0.66 +0.6 5,546,216 + PFR28_04854 0.66 +0.9 5,546,216 + PFR28_04854 0.66 -0.7 5,546,217 - PFR28_04854 0.67 +1.3 5,546,217 - PFR28_04854 0.67 -1.6 5,546,217 - PFR28_04854 0.67 +0.0 5,546,217 - PFR28_04854 0.67 -3.4 5,546,217 - PFR28_04854 0.67 +1.0 5,546,267 + PFR28_04854 0.74 -0.7 5,546,267 + PFR28_04854 0.74 -1.1 5,546,267 + PFR28_04854 0.74 -0.6 5,546,267 + PFR28_04854 0.74 +0.1 5,546,267 + PFR28_04854 0.74 +0.1 5,546,267 + PFR28_04854 0.74 +1.1 5,546,267 + PFR28_04854 0.74 +2.4 5,546,267 + PFR28_04854 0.74 +0.6 5,546,267 + PFR28_04854 0.74 -0.6 5,546,268 - PFR28_04854 0.74 -0.7 5,546,268 - PFR28_04854 0.74 -1.7 5,546,268 - PFR28_04854 0.74 -0.5 5,546,268 - PFR28_04854 0.74 -1.5 5,546,268 - PFR28_04854 0.74 +1.0 5,546,268 - PFR28_04854 0.74 +0.2 5,546,268 - PFR28_04854 0.74 -1.0 5,546,378 + +0.3 5,546,378 + -0.1 5,546,378 + -1.0 5,546,378 + -0.6 5,546,379 - +0.2 5,546,379 - -0.4 5,546,379 - +1.2 5,546,379 - +0.0 5,546,381 + +0.4 5,546,381 + -0.4 5,546,382 - +0.1 5,546,440 + -1.0 5,546,441 - +0.0 5,546,441 - +0.4 5,546,464 + +1.1 5,546,489 + -0.6 5,546,627 - PFR28_04855 0.23 -0.9 5,546,660 + PFR28_04855 0.28 +0.4 5,546,661 - PFR28_04855 0.28 -0.8 5,546,710 + PFR28_04855 0.34 -1.7 5,546,711 - PFR28_04855 0.34 +0.6 5,546,711 - PFR28_04855 0.34 +0.1 5,546,711 - PFR28_04855 0.34 +0.9 5,546,733 + PFR28_04855 0.37 +1.0 5,546,733 + PFR28_04855 0.37 -0.9 5,546,745 + PFR28_04855 0.38 +0.6 5,546,745 + PFR28_04855 0.38 -0.7 5,546,758 + PFR28_04855 0.40 +0.7 5,546,758 + PFR28_04855 0.40 -0.2 5,546,759 - PFR28_04855 0.40 +0.2 5,546,759 - PFR28_04855 0.40 -0.4 5,546,789 + PFR28_04855 0.44 +0.2 5,546,844 + PFR28_04855 0.51 +0.3 5,546,845 - PFR28_04855 0.51 -1.0 5,546,845 - PFR28_04855 0.51 -0.4 5,546,845 - PFR28_04855 0.51 -0.6 5,546,872 + PFR28_04855 0.54 -1.2 5,546,872 + PFR28_04855 0.54 +0.4 5,546,872 + PFR28_04855 0.54 -0.1 5,546,873 - PFR28_04855 0.54 +0.2 5,546,873 - PFR28_04855 0.54 -2.9 5,546,873 - PFR28_04855 0.54 +0.8 5,546,873 - PFR28_04855 0.54 -0.2 5,546,920 - PFR28_04855 0.60 -1.1 5,547,091 + PFR28_04855 0.81 +0.3 5,547,091 + PFR28_04855 0.81 -0.9 5,547,092 - PFR28_04855 0.82 +0.7 5,547,092 - PFR28_04855 0.82 +0.3 5,547,092 - PFR28_04855 0.82 -1.0 5,547,092 - PFR28_04855 0.82 +1.4 5,547,092 - PFR28_04855 0.82 +0.3 5,547,092 - PFR28_04855 0.82 -1.0 5,547,222 + -1.2 5,547,222 + +0.7 5,547,222 + +0.3 5,547,222 + +1.3 5,547,223 - +0.3 5,547,223 - +0.8 5,547,260 + +0.0 5,547,261 - +0.1 5,547,261 - -0.6 5,547,270 + -1.1 5,547,270 + -0.1 5,547,270 + -0.3 5,547,285 - -0.5 5,547,285 - +1.3 5,547,285 - +0.0 5,547,285 - +1.8 5,547,285 - +0.9 5,547,291 + -0.4 5,547,371 + +0.8 5,547,371 + +0.4 5,547,372 - +0.2 5,547,372 - -0.5 5,547,372 - -0.0 5,547,372 - -1.9 5,547,372 - -0.2 5,547,372 - -0.6 5,547,373 + +0.3 5,547,373 + +0.5 5,547,373 + -0.0 5,547,373 + -0.2 5,547,373 + +0.6 5,547,373 + +0.3 5,547,373 + +0.4 5,547,373 + +0.9 5,547,373 + -1.2 5,547,373 + +1.5 5,547,373 + -0.0 5,547,373 + +0.1 5,547,373 + -1.4 5,547,373 + -0.4 5,547,373 + -0.5 5,547,373 + -1.7 5,547,373 + -0.4 5,547,373 + +1.2 5,547,373 + -0.0 5,547,373 + -1.3 5,547,373 + -0.1 5,547,373 + -1.4 5,547,373 + -0.7 5,547,373 + +1.8 5,547,373 + +0.6 5,547,374 - -0.6 5,547,374 - -2.2 5,547,374 - -1.9 5,547,374 - -1.7 5,547,374 - -0.3 5,547,374 - +0.0 5,547,374 - -0.3 5,547,374 - -0.5 5,547,374 - -1.3 5,547,374 - +1.6 5,547,374 - +0.6 5,547,374 - -0.3 5,547,374 - +0.9 5,547,374 - -0.2 5,547,374 - +0.4 5,547,374 - +2.3 5,547,374 - +0.3 5,547,374 - +1.1 5,547,374 - +0.3 5,547,374 - +0.7 5,547,374 - -1.4 5,547,374 - +0.0 5,547,374 - +0.5 5,547,374 - -0.1 5,547,374 - +1.4 5,547,374 - +0.6 5,547,374 - +1.0 5,547,374 - -0.3 5,547,374 - +0.2 5,547,374 - -0.1 5,547,374 - -1.6 5,547,400 - -2.9 5,547,416 + -0.9 5,547,416 + +0.1 5,547,417 - -1.2 5,547,418 + -2.4 5,547,419 - -1.3 5,547,419 - -0.3 5,547,562 + +1.1 5,547,562 + -1.6 5,547,563 - +0.2 5,547,563 - -0.7 5,547,605 + -0.5 5,547,605 + -1.2 5,547,605 + -0.4 5,547,668 + PFR28_04856 0.12 +0.1 5,547,670 + PFR28_04856 0.12 -1.4 5,547,670 + PFR28_04856 0.12 -1.0 5,547,670 + PFR28_04856 0.12 -0.3 5,547,670 + PFR28_04856 0.12 +0.2 5,547,671 - PFR28_04856 0.13 +3.6 5,547,671 - PFR28_04856 0.13 -1.0 5,547,671 - PFR28_04856 0.13 -1.4 5,547,763 + PFR28_04856 0.22 -0.4 5,547,764 - PFR28_04856 0.22 -0.5 5,547,764 - PFR28_04856 0.22 -0.2 5,548,033 + PFR28_04856 0.49 +1.6 5,548,033 + PFR28_04856 0.49 -0.7 5,548,033 + PFR28_04856 0.49 -1.6 5,548,034 - PFR28_04856 0.49 +1.6 5,548,034 - PFR28_04856 0.49 -0.5 5,548,034 - PFR28_04856 0.49 -0.7 5,548,034 - PFR28_04856 0.49 +0.2 5,548,034 - PFR28_04856 0.49 +0.2 5,548,078 + PFR28_04856 0.54 +0.2 5,548,079 - PFR28_04856 0.54 +0.0 5,548,210 + PFR28_04856 0.67 +0.6 5,548,210 + PFR28_04856 0.67 +0.5 5,548,210 + PFR28_04856 0.67 +0.1 5,548,211 - PFR28_04856 0.67 -0.8 5,548,211 - PFR28_04856 0.67 +0.5 5,548,211 - PFR28_04856 0.67 -0.4
Or see this region's nucleotide sequence