Strain Fitness in Pseudomonas sp. RS175 around PFR28_02857

Experiment: Glycocyamine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycocyamine 10 mM (C)
3,330,895	+		PFR28_02856	0.49	-0.5
3,330,895	+		PFR28_02856	0.49	+0.5
3,330,895	+		PFR28_02856	0.49	-1.3
3,330,895	+		PFR28_02856	0.49	+0.4
3,330,895	+		PFR28_02856	0.49	-0.2
3,330,895	+		PFR28_02856	0.49	+0.3
3,330,896	-		PFR28_02856	0.49	+0.6
3,330,896	-		PFR28_02856	0.49	-0.2
3,330,896	-		PFR28_02856	0.49	+0.8
3,330,896	-		PFR28_02856	0.49	+1.2
3,330,896	-		PFR28_02856	0.49	+0.6
3,330,896	-		PFR28_02856	0.49	-0.6
3,330,982	+		PFR28_02856	0.57	-0.8
3,330,982	+		PFR28_02856	0.57	-0.1
3,330,983	-		PFR28_02856	0.57	+0.4
3,330,983	-		PFR28_02856	0.57	+0.6
3,330,983	-		PFR28_02856	0.57	-0.2
3,331,158	+		PFR28_02856	0.72	+1.3
3,331,158	+		PFR28_02856	0.72	-0.8
3,331,158	+		PFR28_02856	0.72	+0.5
3,331,158	+		PFR28_02856	0.72	-0.1
3,331,234	-		PFR28_02856	0.79	+0.8
3,331,278	+		PFR28_02856	0.83	-0.0
3,331,278	+		PFR28_02856	0.83	-0.2
3,331,278	+		PFR28_02856	0.83	-0.2
3,331,278	+		PFR28_02856	0.83	+0.2
3,331,278	+		PFR28_02856	0.83	-0.2
3,331,278	+		PFR28_02856	0.83	-0.2
3,331,549	+				-0.1
3,331,549	+				-0.5
3,331,549	+				-0.0
3,331,549	+				-0.6
3,331,549	+				+0.4
3,331,549	+				+0.1
3,331,550	-				+1.1
3,331,550	-				-1.2
3,331,550	-				-1.0
3,331,550	-				-1.3
3,331,582	+				-0.0
3,331,582	+				-1.2
3,331,582	+				+0.5
3,331,582	+				-0.7
3,331,582	+				+0.2
3,331,583	-				+0.7
3,331,583	-				-0.1
3,331,583	-				+0.4
3,331,583	-				+0.3
3,331,583	-				-0.6
3,331,586	-				+0.8
3,331,586	-				+0.3
3,331,586	-				-0.7
3,331,682	-				-0.1
3,331,729	+				-1.6
3,331,729	+				+0.5
3,331,729	+				-0.1
3,331,729	+				+0.0
3,331,729	+				-1.3
3,331,729	+				+0.2
3,331,729	+				-0.1
3,331,730	-				-0.2
3,331,730	-				+0.2
3,331,730	-				+0.2
3,331,730	-				+0.4
3,331,730	-				+0.2
3,331,730	-				+0.3
3,331,730	-				-0.2
3,331,730	-				+0.4
3,331,730	-				-0.1
3,331,730	-				+1.0
3,331,730	-				-0.4
3,331,730	-				-0.6
3,331,810	+		PFR28_02857	0.13	+0.3
3,331,810	+		PFR28_02857	0.13	-0.8
3,331,810	+		PFR28_02857	0.13	+2.8
3,331,810	+		PFR28_02857	0.13	-0.2
3,331,811	-		PFR28_02857	0.13	-0.1
3,331,811	-		PFR28_02857	0.13	-0.6
3,331,811	-		PFR28_02857	0.13	-0.4
3,331,811	-		PFR28_02857	0.13	-0.2
3,331,811	-		PFR28_02857	0.13	+0.5
3,331,811	-		PFR28_02857	0.13	-1.7
3,331,831	+		PFR28_02857	0.14	-0.4
3,331,909	+		PFR28_02857	0.17	+1.8
3,331,909	+		PFR28_02857	0.17	-0.8
3,331,909	+		PFR28_02857	0.17	+2.3
3,331,909	+		PFR28_02857	0.17	-0.1
3,331,909	+		PFR28_02857	0.17	-1.9
3,331,909	+		PFR28_02857	0.17	+0.5
3,331,909	+		PFR28_02857	0.17	-2.4
3,331,910	-		PFR28_02857	0.17	-0.7
3,331,910	-		PFR28_02857	0.17	+0.6
3,331,910	-		PFR28_02857	0.17	+0.7
3,331,910	-		PFR28_02857	0.17	+0.8
3,331,910	-		PFR28_02857	0.17	-0.7
3,331,910	-		PFR28_02857	0.17	+0.2
3,331,924	+		PFR28_02857	0.17	+0.8
3,331,925	-		PFR28_02857	0.17	+0.4
3,332,056	+		PFR28_02857	0.23	-0.8
3,332,056	+		PFR28_02857	0.23	+0.8
3,332,056	+		PFR28_02857	0.23	-0.4
3,332,056	+		PFR28_02857	0.23	-0.3
3,332,057	-		PFR28_02857	0.23	-0.2
3,332,057	-		PFR28_02857	0.23	-0.7
3,332,057	-		PFR28_02857	0.23	-0.0
3,332,057	-		PFR28_02857	0.23	-0.0
3,332,057	-		PFR28_02857	0.23	-0.1
3,332,057	-		PFR28_02857	0.23	+0.8
3,332,057	-		PFR28_02857	0.23	+0.2
3,332,057	-		PFR28_02857	0.23	+0.8
3,332,057	-		PFR28_02857	0.23	+0.5
3,332,057	-		PFR28_02857	0.23	-0.6
3,332,057	-		PFR28_02857	0.23	+0.4
3,332,083	+		PFR28_02857	0.24	-0.3
3,332,083	+		PFR28_02857	0.24	+0.3
3,332,084	-		PFR28_02857	0.24	+1.0
3,332,123	-		PFR28_02857	0.26	-0.0
3,332,123	-		PFR28_02857	0.26	-0.4
3,332,140	+		PFR28_02857	0.26	-0.2
3,332,140	+		PFR28_02857	0.26	-0.9
3,332,140	+		PFR28_02857	0.26	+0.8
3,332,140	+		PFR28_02857	0.26	+0.3
3,332,141	-		PFR28_02857	0.26	-0.5
3,332,212	+		PFR28_02857	0.29	+1.8
3,332,212	+		PFR28_02857	0.29	+0.4
3,332,239	+		PFR28_02857	0.30	+1.0
3,332,239	+		PFR28_02857	0.30	+0.2
3,332,240	-		PFR28_02857	0.30	+0.3
3,332,240	-		PFR28_02857	0.30	+1.6
3,332,275	+		PFR28_02857	0.32	-0.6
3,332,275	+		PFR28_02857	0.32	+0.7
3,332,275	+		PFR28_02857	0.32	-0.1
3,332,275	+		PFR28_02857	0.32	-0.5
3,332,275	+		PFR28_02857	0.32	+0.8
3,332,275	+		PFR28_02857	0.32	+0.3
3,332,276	-		PFR28_02857	0.32	+0.1
3,332,276	-		PFR28_02857	0.32	+0.2
3,332,276	-		PFR28_02857	0.32	-0.5
3,332,276	-		PFR28_02857	0.32	+0.3
3,332,276	-		PFR28_02857	0.32	-0.0
3,332,276	-		PFR28_02857	0.32	+1.8
3,332,276	-		PFR28_02857	0.32	-0.0
3,332,276	-		PFR28_02857	0.32	+0.3
3,332,276	-		PFR28_02857	0.32	-1.2
3,332,488	+		PFR28_02857	0.41	+1.0
3,332,489	-		PFR28_02857	0.41	+0.2
3,332,578	+		PFR28_02857	0.44	+0.8
3,332,659	+		PFR28_02857	0.48	-1.3
3,332,659	+		PFR28_02857	0.48	+0.3
3,332,659	+		PFR28_02857	0.48	+0.5
3,332,659	+		PFR28_02857	0.48	+0.9
3,332,659	+		PFR28_02857	0.48	-3.1
3,332,660	-		PFR28_02857	0.48	-0.2
3,332,660	-		PFR28_02857	0.48	-0.0
3,332,660	-		PFR28_02857	0.48	-1.0
3,332,660	-		PFR28_02857	0.48	+0.0
3,332,660	-		PFR28_02857	0.48	+0.3
3,332,660	-		PFR28_02857	0.48	-0.4
3,332,660	-		PFR28_02857	0.48	-0.7
3,332,660	-		PFR28_02857	0.48	+0.4
3,332,660	-		PFR28_02857	0.48	-0.6
3,332,660	-		PFR28_02857	0.48	-1.6
3,332,662	+		PFR28_02857	0.48	+0.2
3,332,662	+		PFR28_02857	0.48	-1.2
3,332,662	+		PFR28_02857	0.48	+0.8
3,332,662	+		PFR28_02857	0.48	+0.4
3,332,662	+		PFR28_02857	0.48	-0.2
3,332,662	+		PFR28_02857	0.48	+0.6
3,332,662	+		PFR28_02857	0.48	+0.2
3,332,662	+		PFR28_02857	0.48	-2.2
3,332,662	+		PFR28_02857	0.48	-0.8
3,332,663	-		PFR28_02857	0.48	+0.1
3,332,663	-		PFR28_02857	0.48	+1.8
3,332,663	-		PFR28_02857	0.48	+1.4
3,332,663	-		PFR28_02857	0.48	-0.4
3,332,663	-		PFR28_02857	0.48	-0.2
3,332,663	-		PFR28_02857	0.48	+0.6
3,332,663	-		PFR28_02857	0.48	-2.5
3,332,663	-		PFR28_02857	0.48	-1.0
3,332,663	-		PFR28_02857	0.48	+1.0
3,332,722	+		PFR28_02857	0.50	+0.3
3,332,735	-		PFR28_02857	0.51	+0.6
3,332,737	+		PFR28_02857	0.51	-0.7
3,332,737	+		PFR28_02857	0.51	-1.7
3,332,737	+		PFR28_02857	0.51	+0.2
3,332,737	+		PFR28_02857	0.51	-0.1
3,332,737	+		PFR28_02857	0.51	+0.2
3,332,737	+		PFR28_02857	0.51	-0.7
3,332,738	-		PFR28_02857	0.51	-1.9
3,332,738	-		PFR28_02857	0.51	+0.8
3,332,843	-		PFR28_02857	0.55	-0.7
3,332,858	-		PFR28_02857	0.56	-0.4
3,332,902	+		PFR28_02857	0.57	+0.0
3,332,902	+		PFR28_02857	0.57	+1.5
3,332,902	+		PFR28_02857	0.57	+0.7
3,332,902	+		PFR28_02857	0.57	-2.3
3,332,902	+		PFR28_02857	0.57	+1.0
3,332,902	+		PFR28_02857	0.57	+0.5
3,332,902	+		PFR28_02857	0.57	-1.6
3,332,902	+		PFR28_02857	0.57	+0.8
3,332,902	+		PFR28_02857	0.57	+1.1
3,332,902	+		PFR28_02857	0.57	+1.1
3,332,903	-		PFR28_02857	0.58	-0.5
3,332,903	-		PFR28_02857	0.58	-0.6
3,332,903	-		PFR28_02857	0.58	-0.3
3,332,903	-		PFR28_02857	0.58	+1.8
3,332,905	+		PFR28_02857	0.58	-1.7
3,332,905	+		PFR28_02857	0.58	-1.2
3,333,025	+		PFR28_02857	0.63	-0.2
3,333,026	-		PFR28_02857	0.63	-0.2
3,333,026	-		PFR28_02857	0.63	-0.1
3,333,083	+		PFR28_02857	0.65	+0.4
3,333,084	-		PFR28_02857	0.65	+0.1
3,333,222	+		PFR28_02857	0.71	-0.6
3,333,360	+		PFR28_02857	0.76	-0.7
3,333,360	+		PFR28_02857	0.76	+0.6
3,333,360	+		PFR28_02857	0.76	+0.1
3,333,361	-		PFR28_02857	0.76	+0.8
3,333,361	-		PFR28_02857	0.76	-1.0
3,333,361	-		PFR28_02857	0.76	-0.1
3,333,380	+		PFR28_02857	0.77	-0.9
3,333,380	+		PFR28_02857	0.77	-0.7
3,333,646	+		PFR28_02857	0.88	-1.2
3,333,647	-		PFR28_02857	0.88	-0.8
3,333,824	+				-0.7
3,333,824	+				+0.2
3,333,825	-				+0.7
3,333,825	-				-0.4
3,333,924	-				-0.6
3,333,969	+				-0.1
3,333,984	-				+0.8
3,333,984	-				+0.4
3,334,008	+				+0.2
3,334,008	+				+0.7
3,334,009	-				-0.8
3,334,009	-				-0.7
3,334,009	-				-1.0
3,334,009	-				-1.6
3,334,067	+				+0.4
3,334,067	+				+0.2
3,334,068	-				+0.3
3,334,068	-				-1.1
3,334,068	-				-0.6
3,334,068	-				+0.8
3,334,116	-				+1.3
3,334,123	+				-0.3
3,334,123	+				-0.2
3,334,124	-				+0.2
3,334,182	+				+0.8
3,334,182	+				+0.4
3,334,183	-				+1.8
3,334,183	-				-0.2
3,334,183	-				-1.9
3,334,217	+				-0.8
3,334,217	+				+1.3
3,334,217	+				-1.3
3,334,217	+				+3.4
3,334,218	-				+0.4
3,334,218	-				-0.2
3,334,468	-		PFR28_02858	0.28	+0.4
3,334,666	+		PFR28_02858	0.48	+0.4
3,334,754	-		PFR28_02858	0.57	-0.6
3,334,754	-		PFR28_02858	0.57	+0.5
3,334,754	-		PFR28_02858	0.57	-0.2
3,334,757	+		PFR28_02858	0.57	+0.8
3,334,757	+		PFR28_02858	0.57	-0.6
3,334,757	+		PFR28_02858	0.57	-0.1
3,334,757	+		PFR28_02858	0.57	-1.4
3,334,758	-		PFR28_02858	0.57	-0.9
3,334,758	-		PFR28_02858	0.57	-1.1
3,334,758	-		PFR28_02858	0.57	-0.0
3,334,758	-		PFR28_02858	0.57	-1.7
3,334,771	+		PFR28_02858	0.58	-1.6
3,334,848	+		PFR28_02858	0.66	+0.0
3,334,848	+		PFR28_02858	0.66	-0.5
3,334,848	+		PFR28_02858	0.66	-1.3
3,334,848	+		PFR28_02858	0.66	-0.8
3,334,849	-		PFR28_02858	0.66	+0.4
3,334,849	-		PFR28_02858	0.66	-0.6
3,334,849	-		PFR28_02858	0.66	-0.8
3,334,858	+		PFR28_02858	0.67	+0.9
3,334,859	-		PFR28_02858	0.67	-1.3
3,334,859	-		PFR28_02858	0.67	-1.7
3,334,904	+		PFR28_02858	0.72	-0.6
3,334,923	+		PFR28_02858	0.74	-0.1