Strain Fitness in Pseudomonas sp. RS175 around PFR28_05223

Experiment: L-Carnitine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_05221 and PFR28_05222 are separated by 48 nucleotidesPFR28_05222 and PFR28_05223 are separated by 186 nucleotidesPFR28_05223 and PFR28_05224 are separated by 51 nucleotides PFR28_05221: PFR28_05221 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 5,979,604 to 5,980,068 _05221 PFR28_05222: PFR28_05222 - 3-dehydroquinate dehydratase 1, at 5,980,117 to 5,980,569 _05222 PFR28_05223: PFR28_05223 - Methyl-accepting chemotaxis protein CtpL, at 5,980,756 to 5,982,702 _05223 PFR28_05224: PFR28_05224 - Regulator of RpoS, at 5,982,754 to 5,984,424 _05224 Position (kb) 5980 5981 5982 5983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5981.593 kb on + strand, within PFR28_05223at 5981.610 kb on - strand, within PFR28_05223at 5981.767 kb on - strand, within PFR28_05223at 5981.767 kb on - strand, within PFR28_05223at 5981.767 kb on - strand, within PFR28_05223at 5982.263 kb on + strand, within PFR28_05223at 5982.524 kb on + strandat 5982.524 kb on + strandat 5982.524 kb on + strandat 5982.524 kb on + strandat 5982.524 kb on + strandat 5982.525 kb on - strandat 5982.525 kb on - strandat 5982.525 kb on - strandat 5982.579 kb on - strandat 5982.596 kb on + strandat 5982.672 kb on + strandat 5982.710 kb on + strandat 5982.763 kb on + strandat 5983.004 kb on - strand, within PFR28_05224at 5983.257 kb on + strand, within PFR28_05224at 5983.257 kb on + strand, within PFR28_05224at 5983.271 kb on + strand, within PFR28_05224at 5983.271 kb on + strand, within PFR28_05224at 5983.271 kb on + strand, within PFR28_05224at 5983.271 kb on + strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.272 kb on - strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.445 kb on + strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.446 kb on - strand, within PFR28_05224at 5983.466 kb on + strand, within PFR28_05224at 5983.466 kb on + strand, within PFR28_05224at 5983.466 kb on + strand, within PFR28_05224at 5983.467 kb on - strand, within PFR28_05224at 5983.467 kb on - strand, within PFR28_05224at 5983.467 kb on - strand, within PFR28_05224at 5983.467 kb on - strand, within PFR28_05224at 5983.467 kb on - strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.523 kb on + strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.524 kb on - strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.677 kb on + strand, within PFR28_05224at 5983.678 kb on - strand, within PFR28_05224at 5983.678 kb on - strand, within PFR28_05224at 5983.679 kb on + strand, within PFR28_05224at 5983.679 kb on + strand, within PFR28_05224at 5983.679 kb on + strand, within PFR28_05224at 5983.680 kb on - strand, within PFR28_05224at 5983.688 kb on + strand, within PFR28_05224at 5983.688 kb on + strand, within PFR28_05224

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
remove
5,981,593 + PFR28_05223 0.43 +0.3
5,981,610 - PFR28_05223 0.44 +0.4
5,981,767 - PFR28_05223 0.52 -0.2
5,981,767 - PFR28_05223 0.52 +0.2
5,981,767 - PFR28_05223 0.52 +1.2
5,982,263 + PFR28_05223 0.77 +0.2
5,982,524 + +0.8
5,982,524 + +0.8
5,982,524 + -1.8
5,982,524 + +2.3
5,982,524 + -0.1
5,982,525 - +0.1
5,982,525 - -2.8
5,982,525 - +1.3
5,982,579 - -0.1
5,982,596 + -1.2
5,982,672 + -0.4
5,982,710 + +0.4
5,982,763 + -0.0
5,983,004 - PFR28_05224 0.15 -1.6
5,983,257 + PFR28_05224 0.30 +0.0
5,983,257 + PFR28_05224 0.30 -0.2
5,983,271 + PFR28_05224 0.31 -0.8
5,983,271 + PFR28_05224 0.31 +0.9
5,983,271 + PFR28_05224 0.31 +0.5
5,983,271 + PFR28_05224 0.31 -0.5
5,983,272 - PFR28_05224 0.31 +1.1
5,983,272 - PFR28_05224 0.31 -1.0
5,983,272 - PFR28_05224 0.31 +0.5
5,983,272 - PFR28_05224 0.31 -0.2
5,983,272 - PFR28_05224 0.31 -1.1
5,983,272 - PFR28_05224 0.31 -0.2
5,983,445 + PFR28_05224 0.41 +1.0
5,983,445 + PFR28_05224 0.41 +0.9
5,983,445 + PFR28_05224 0.41 +2.1
5,983,445 + PFR28_05224 0.41 +0.4
5,983,445 + PFR28_05224 0.41 +0.8
5,983,445 + PFR28_05224 0.41 +0.0
5,983,445 + PFR28_05224 0.41 -0.7
5,983,445 + PFR28_05224 0.41 -0.5
5,983,445 + PFR28_05224 0.41 -0.4
5,983,445 + PFR28_05224 0.41 -0.7
5,983,445 + PFR28_05224 0.41 -1.6
5,983,445 + PFR28_05224 0.41 +0.9
5,983,446 - PFR28_05224 0.41 +0.2
5,983,446 - PFR28_05224 0.41 +0.1
5,983,446 - PFR28_05224 0.41 +0.2
5,983,446 - PFR28_05224 0.41 +0.8
5,983,446 - PFR28_05224 0.41 -0.6
5,983,446 - PFR28_05224 0.41 +0.8
5,983,446 - PFR28_05224 0.41 +1.4
5,983,446 - PFR28_05224 0.41 +0.6
5,983,446 - PFR28_05224 0.41 -2.2
5,983,446 - PFR28_05224 0.41 -0.0
5,983,446 - PFR28_05224 0.41 +0.1
5,983,466 + PFR28_05224 0.43 -0.2
5,983,466 + PFR28_05224 0.43 +0.4
5,983,466 + PFR28_05224 0.43 -1.8
5,983,467 - PFR28_05224 0.43 -0.7
5,983,467 - PFR28_05224 0.43 +1.8
5,983,467 - PFR28_05224 0.43 +0.5
5,983,467 - PFR28_05224 0.43 -1.2
5,983,467 - PFR28_05224 0.43 +0.3
5,983,523 + PFR28_05224 0.46 -1.5
5,983,523 + PFR28_05224 0.46 +0.4
5,983,523 + PFR28_05224 0.46 -0.1
5,983,523 + PFR28_05224 0.46 -0.3
5,983,523 + PFR28_05224 0.46 -1.5
5,983,523 + PFR28_05224 0.46 +0.4
5,983,523 + PFR28_05224 0.46 +2.2
5,983,523 + PFR28_05224 0.46 +0.5
5,983,523 + PFR28_05224 0.46 -0.9
5,983,523 + PFR28_05224 0.46 -0.6
5,983,523 + PFR28_05224 0.46 +1.1
5,983,523 + PFR28_05224 0.46 +1.1
5,983,523 + PFR28_05224 0.46 +0.3
5,983,523 + PFR28_05224 0.46 -0.2
5,983,523 + PFR28_05224 0.46 +0.1
5,983,523 + PFR28_05224 0.46 -2.0
5,983,523 + PFR28_05224 0.46 +0.5
5,983,523 + PFR28_05224 0.46 -0.8
5,983,523 + PFR28_05224 0.46 -0.8
5,983,523 + PFR28_05224 0.46 -0.3
5,983,523 + PFR28_05224 0.46 +0.1
5,983,523 + PFR28_05224 0.46 -0.8
5,983,523 + PFR28_05224 0.46 +0.3
5,983,523 + PFR28_05224 0.46 +0.4
5,983,523 + PFR28_05224 0.46 +0.3
5,983,523 + PFR28_05224 0.46 -0.1
5,983,523 + PFR28_05224 0.46 +0.8
5,983,523 + PFR28_05224 0.46 +0.2
5,983,523 + PFR28_05224 0.46 +0.4
5,983,523 + PFR28_05224 0.46 -0.5
5,983,523 + PFR28_05224 0.46 -1.1
5,983,523 + PFR28_05224 0.46 -1.6
5,983,523 + PFR28_05224 0.46 +0.8
5,983,523 + PFR28_05224 0.46 -1.7
5,983,523 + PFR28_05224 0.46 +0.3
5,983,524 - PFR28_05224 0.46 +0.8
5,983,524 - PFR28_05224 0.46 -0.9
5,983,524 - PFR28_05224 0.46 -1.8
5,983,524 - PFR28_05224 0.46 -0.4
5,983,524 - PFR28_05224 0.46 +0.5
5,983,524 - PFR28_05224 0.46 +0.1
5,983,524 - PFR28_05224 0.46 -0.8
5,983,524 - PFR28_05224 0.46 +1.3
5,983,524 - PFR28_05224 0.46 +1.8
5,983,524 - PFR28_05224 0.46 +0.8
5,983,524 - PFR28_05224 0.46 -0.2
5,983,524 - PFR28_05224 0.46 -2.2
5,983,524 - PFR28_05224 0.46 +0.3
5,983,524 - PFR28_05224 0.46 -1.0
5,983,524 - PFR28_05224 0.46 -2.3
5,983,524 - PFR28_05224 0.46 -0.3
5,983,524 - PFR28_05224 0.46 +0.8
5,983,524 - PFR28_05224 0.46 -0.1
5,983,524 - PFR28_05224 0.46 +0.2
5,983,524 - PFR28_05224 0.46 -1.9
5,983,524 - PFR28_05224 0.46 +0.3
5,983,524 - PFR28_05224 0.46 +1.2
5,983,524 - PFR28_05224 0.46 +1.3
5,983,524 - PFR28_05224 0.46 +0.0
5,983,524 - PFR28_05224 0.46 -1.2
5,983,524 - PFR28_05224 0.46 +2.1
5,983,524 - PFR28_05224 0.46 +0.2
5,983,524 - PFR28_05224 0.46 -0.7
5,983,524 - PFR28_05224 0.46 +0.3
5,983,524 - PFR28_05224 0.46 +0.4
5,983,524 - PFR28_05224 0.46 -1.2
5,983,677 + PFR28_05224 0.55 -0.2
5,983,677 + PFR28_05224 0.55 +0.2
5,983,677 + PFR28_05224 0.55 +1.9
5,983,677 + PFR28_05224 0.55 -0.8
5,983,677 + PFR28_05224 0.55 -0.6
5,983,677 + PFR28_05224 0.55 +0.6
5,983,678 - PFR28_05224 0.55 -0.5
5,983,678 - PFR28_05224 0.55 +0.3
5,983,679 + PFR28_05224 0.55 -0.7
5,983,679 + PFR28_05224 0.55 +1.1
5,983,679 + PFR28_05224 0.55 +1.1
5,983,680 - PFR28_05224 0.55 +0.8
5,983,688 + PFR28_05224 0.56 +1.3
5,983,688 + PFR28_05224 0.56 +0.6

Or see this region's nucleotide sequence