Strain Fitness in Pseudomonas sp. RS175 around PFR28_05111

Experiment: L-Carnitine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_05110 and PFR28_05111 are separated by 164 nucleotidesPFR28_05111 and PFR28_05112 are separated by 170 nucleotides PFR28_05110: PFR28_05110 - Motility protein A, at 5,854,111 to 5,854,962 _05110 PFR28_05111: PFR28_05111 - Motility protein B, at 5,855,127 to 5,856,167 _05111 PFR28_05112: PFR28_05112 - Small ribosomal subunit biogenesis GTPase RsgA, at 5,856,338 to 5,857,369 _05112 Position (kb) 5855 5856 5857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5854.133 kb on + strandat 5854.133 kb on + strandat 5854.134 kb on - strandat 5854.134 kb on - strandat 5854.134 kb on - strandat 5854.134 kb on - strandat 5854.162 kb on + strandat 5854.163 kb on - strandat 5854.264 kb on + strand, within PFR28_05110at 5854.264 kb on + strand, within PFR28_05110at 5854.264 kb on + strand, within PFR28_05110at 5854.265 kb on - strand, within PFR28_05110at 5854.265 kb on - strand, within PFR28_05110at 5854.265 kb on - strand, within PFR28_05110at 5854.265 kb on - strand, within PFR28_05110at 5854.330 kb on + strand, within PFR28_05110at 5854.330 kb on + strand, within PFR28_05110at 5854.331 kb on - strand, within PFR28_05110at 5854.331 kb on - strand, within PFR28_05110at 5854.331 kb on - strand, within PFR28_05110at 5854.331 kb on - strand, within PFR28_05110at 5854.354 kb on + strand, within PFR28_05110at 5854.354 kb on + strand, within PFR28_05110at 5854.355 kb on - strand, within PFR28_05110at 5854.444 kb on + strand, within PFR28_05110at 5854.444 kb on + strand, within PFR28_05110at 5854.445 kb on - strand, within PFR28_05110at 5854.445 kb on - strand, within PFR28_05110at 5854.445 kb on - strand, within PFR28_05110at 5854.492 kb on + strand, within PFR28_05110at 5854.492 kb on + strand, within PFR28_05110at 5854.492 kb on + strand, within PFR28_05110at 5854.492 kb on + strand, within PFR28_05110at 5854.493 kb on - strand, within PFR28_05110at 5854.493 kb on - strand, within PFR28_05110at 5854.493 kb on - strand, within PFR28_05110at 5854.493 kb on - strand, within PFR28_05110at 5854.493 kb on - strand, within PFR28_05110at 5854.561 kb on + strand, within PFR28_05110at 5854.561 kb on + strand, within PFR28_05110at 5854.561 kb on + strand, within PFR28_05110at 5854.562 kb on - strand, within PFR28_05110at 5854.620 kb on + strand, within PFR28_05110at 5854.621 kb on - strand, within PFR28_05110at 5854.822 kb on + strand, within PFR28_05110at 5854.822 kb on + strand, within PFR28_05110at 5854.823 kb on - strand, within PFR28_05110at 5854.823 kb on - strand, within PFR28_05110at 5854.961 kb on - strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.979 kb on + strandat 5854.980 kb on - strandat 5854.980 kb on - strandat 5854.980 kb on - strandat 5854.980 kb on - strandat 5854.980 kb on - strandat 5854.980 kb on - strandat 5855.037 kb on - strandat 5855.067 kb on + strandat 5855.101 kb on + strandat 5855.101 kb on + strandat 5855.101 kb on + strandat 5855.101 kb on + strandat 5855.101 kb on + strandat 5855.101 kb on + strandat 5855.102 kb on - strandat 5855.102 kb on - strandat 5855.102 kb on - strandat 5855.102 kb on - strandat 5855.102 kb on - strandat 5855.121 kb on + strandat 5855.121 kb on + strandat 5855.121 kb on + strandat 5855.121 kb on + strandat 5855.121 kb on + strandat 5855.121 kb on + strandat 5855.122 kb on - strandat 5855.122 kb on - strandat 5855.122 kb on - strandat 5855.122 kb on - strandat 5855.135 kb on + strandat 5855.136 kb on - strandat 5855.152 kb on + strandat 5855.152 kb on + strandat 5855.152 kb on + strandat 5855.153 kb on - strandat 5855.302 kb on - strand, within PFR28_05111at 5855.343 kb on + strand, within PFR28_05111at 5855.343 kb on + strand, within PFR28_05111at 5855.343 kb on + strand, within PFR28_05111at 5855.343 kb on + strand, within PFR28_05111at 5855.343 kb on + strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.344 kb on - strand, within PFR28_05111at 5855.655 kb on + strand, within PFR28_05111at 5855.656 kb on - strand, within PFR28_05111at 5855.656 kb on - strand, within PFR28_05111at 5855.730 kb on - strand, within PFR28_05111at 5855.746 kb on - strand, within PFR28_05111at 5855.746 kb on - strand, within PFR28_05111at 5855.746 kb on - strand, within PFR28_05111at 5855.746 kb on - strand, within PFR28_05111at 5856.205 kb on + strandat 5856.205 kb on + strandat 5856.205 kb on + strandat 5856.206 kb on - strandat 5856.206 kb on - strandat 5856.235 kb on + strandat 5856.236 kb on - strandat 5856.236 kb on - strandat 5856.257 kb on - strandat 5856.257 kb on - strandat 5856.342 kb on + strandat 5856.342 kb on + strandat 5856.342 kb on + strandat 5856.343 kb on - strandat 5856.343 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
remove
5,854,133 + +1.0
5,854,133 + +1.4
5,854,134 - +1.8
5,854,134 - +0.1
5,854,134 - +1.3
5,854,134 - +0.3
5,854,162 + +0.1
5,854,163 - +0.0
5,854,264 + PFR28_05110 0.18 -0.7
5,854,264 + PFR28_05110 0.18 -1.1
5,854,264 + PFR28_05110 0.18 +0.7
5,854,265 - PFR28_05110 0.18 +0.3
5,854,265 - PFR28_05110 0.18 -0.4
5,854,265 - PFR28_05110 0.18 +0.3
5,854,265 - PFR28_05110 0.18 +0.0
5,854,330 + PFR28_05110 0.26 +0.4
5,854,330 + PFR28_05110 0.26 -0.6
5,854,331 - PFR28_05110 0.26 -1.0
5,854,331 - PFR28_05110 0.26 +0.0
5,854,331 - PFR28_05110 0.26 +1.2
5,854,331 - PFR28_05110 0.26 +0.7
5,854,354 + PFR28_05110 0.29 -1.0
5,854,354 + PFR28_05110 0.29 -0.4
5,854,355 - PFR28_05110 0.29 +0.8
5,854,444 + PFR28_05110 0.39 +1.4
5,854,444 + PFR28_05110 0.39 +0.1
5,854,445 - PFR28_05110 0.39 +0.2
5,854,445 - PFR28_05110 0.39 +0.5
5,854,445 - PFR28_05110 0.39 +1.8
5,854,492 + PFR28_05110 0.45 +1.4
5,854,492 + PFR28_05110 0.45 +0.4
5,854,492 + PFR28_05110 0.45 +0.8
5,854,492 + PFR28_05110 0.45 +0.6
5,854,493 - PFR28_05110 0.45 +1.5
5,854,493 - PFR28_05110 0.45 -0.1
5,854,493 - PFR28_05110 0.45 -0.4
5,854,493 - PFR28_05110 0.45 +0.4
5,854,493 - PFR28_05110 0.45 -1.0
5,854,561 + PFR28_05110 0.53 -0.6
5,854,561 + PFR28_05110 0.53 -0.7
5,854,561 + PFR28_05110 0.53 +0.3
5,854,562 - PFR28_05110 0.53 +0.5
5,854,620 + PFR28_05110 0.60 +0.1
5,854,621 - PFR28_05110 0.60 +0.9
5,854,822 + PFR28_05110 0.83 -0.6
5,854,822 + PFR28_05110 0.83 +0.2
5,854,823 - PFR28_05110 0.84 +2.4
5,854,823 - PFR28_05110 0.84 -0.2
5,854,961 - -0.8
5,854,979 + +0.4
5,854,979 + +1.3
5,854,979 + -1.2
5,854,979 + -1.1
5,854,979 + -0.0
5,854,979 + +0.4
5,854,979 + -2.6
5,854,979 + -0.8
5,854,980 - -2.0
5,854,980 - -0.0
5,854,980 - -0.1
5,854,980 - -0.5
5,854,980 - -0.2
5,854,980 - +1.6
5,855,037 - -1.7
5,855,067 + -0.0
5,855,101 + +0.5
5,855,101 + +1.0
5,855,101 + +0.8
5,855,101 + +0.8
5,855,101 + +0.4
5,855,101 + -0.5
5,855,102 - +0.7
5,855,102 - +0.8
5,855,102 - -0.2
5,855,102 - +0.2
5,855,102 - -0.2
5,855,121 + +1.3
5,855,121 + -0.2
5,855,121 + -0.0
5,855,121 + -0.4
5,855,121 + -1.9
5,855,121 + +0.8
5,855,122 - +0.0
5,855,122 - -0.5
5,855,122 - +0.1
5,855,122 - +0.8
5,855,135 + +0.8
5,855,136 - +0.7
5,855,152 + -0.0
5,855,152 + -0.2
5,855,152 + -0.4
5,855,153 - -0.2
5,855,302 - PFR28_05111 0.17 -0.8
5,855,343 + PFR28_05111 0.21 +0.6
5,855,343 + PFR28_05111 0.21 -1.2
5,855,343 + PFR28_05111 0.21 +0.8
5,855,343 + PFR28_05111 0.21 +0.8
5,855,343 + PFR28_05111 0.21 -0.6
5,855,344 - PFR28_05111 0.21 +0.4
5,855,344 - PFR28_05111 0.21 +0.3
5,855,344 - PFR28_05111 0.21 +0.2
5,855,344 - PFR28_05111 0.21 +2.8
5,855,344 - PFR28_05111 0.21 -0.6
5,855,344 - PFR28_05111 0.21 +0.2
5,855,344 - PFR28_05111 0.21 +1.4
5,855,344 - PFR28_05111 0.21 +1.2
5,855,344 - PFR28_05111 0.21 +0.1
5,855,344 - PFR28_05111 0.21 +1.6
5,855,344 - PFR28_05111 0.21 +1.5
5,855,344 - PFR28_05111 0.21 +1.4
5,855,344 - PFR28_05111 0.21 +1.0
5,855,344 - PFR28_05111 0.21 -0.2
5,855,655 + PFR28_05111 0.51 +0.8
5,855,656 - PFR28_05111 0.51 +0.4
5,855,656 - PFR28_05111 0.51 +0.8
5,855,730 - PFR28_05111 0.58 -0.9
5,855,746 - PFR28_05111 0.59 -0.4
5,855,746 - PFR28_05111 0.59 +0.3
5,855,746 - PFR28_05111 0.59 +1.2
5,855,746 - PFR28_05111 0.59 +1.6
5,856,205 + -0.2
5,856,205 + -0.5
5,856,205 + -0.7
5,856,206 - -0.2
5,856,206 - +0.4
5,856,235 + +0.3
5,856,236 - +0.5
5,856,236 - +1.1
5,856,257 - +0.2
5,856,257 - +0.6
5,856,342 + -0.2
5,856,342 + +0.0
5,856,342 + +0.2
5,856,343 - -0.2
5,856,343 - -0.5

Or see this region's nucleotide sequence