Strain Fitness in Pseudomonas sp. RS175 around PFR28_04921

Experiment: L-Carnitine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04920 and PFR28_04921 are separated by 222 nucleotidesPFR28_04921 and PFR28_04922 are separated by 67 nucleotidesPFR28_04922 and PFR28_04923 are separated by 125 nucleotidesPFR28_04923 and PFR28_04924 are separated by 102 nucleotidesPFR28_04924 and PFR28_04925 overlap by 4 nucleotides PFR28_04920: PFR28_04920 - Putative nuclease YhcG, at 5,614,605 to 5,615,288 _04920 PFR28_04921: PFR28_04921 - hypothetical protein, at 5,615,511 to 5,615,918 _04921 PFR28_04922: PFR28_04922 - hypothetical protein, at 5,615,986 to 5,616,315 _04922 PFR28_04923: PFR28_04923 - tRNA-Phe, at 5,616,441 to 5,616,516 _04923 PFR28_04924: PFR28_04924 - putative Fe(2+)-trafficking protein, at 5,616,619 to 5,616,891 _04924 PFR28_04925: PFR28_04925 - Adenine DNA glycosylase, at 5,616,888 to 5,617,955 _04925 Position (kb) 5615 5616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5614.513 kb on + strandat 5614.514 kb on - strandat 5614.518 kb on + strandat 5614.645 kb on - strandat 5614.656 kb on + strandat 5614.657 kb on - strandat 5614.657 kb on - strandat 5614.840 kb on + strand, within PFR28_04920at 5614.840 kb on + strand, within PFR28_04920at 5614.840 kb on + strand, within PFR28_04920at 5614.841 kb on - strand, within PFR28_04920at 5614.843 kb on + strand, within PFR28_04920at 5614.843 kb on + strand, within PFR28_04920at 5614.843 kb on + strand, within PFR28_04920at 5614.843 kb on + strand, within PFR28_04920at 5614.843 kb on + strand, within PFR28_04920at 5614.844 kb on - strand, within PFR28_04920at 5614.844 kb on - strand, within PFR28_04920at 5614.844 kb on - strand, within PFR28_04920at 5614.844 kb on - strand, within PFR28_04920at 5614.844 kb on - strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.909 kb on + strand, within PFR28_04920at 5614.910 kb on - strand, within PFR28_04920at 5614.910 kb on - strand, within PFR28_04920at 5614.910 kb on - strand, within PFR28_04920at 5614.910 kb on - strand, within PFR28_04920at 5614.910 kb on - strand, within PFR28_04920at 5614.935 kb on + strand, within PFR28_04920at 5614.935 kb on + strand, within PFR28_04920at 5614.936 kb on - strand, within PFR28_04920at 5614.936 kb on - strand, within PFR28_04920at 5614.936 kb on - strand, within PFR28_04920at 5614.936 kb on - strand, within PFR28_04920at 5614.938 kb on - strand, within PFR28_04920at 5614.938 kb on - strand, within PFR28_04920at 5614.938 kb on - strand, within PFR28_04920at 5614.938 kb on - strand, within PFR28_04920at 5614.938 kb on - strand, within PFR28_04920at 5614.992 kb on + strand, within PFR28_04920at 5614.992 kb on + strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5614.993 kb on - strand, within PFR28_04920at 5615.009 kb on - strand, within PFR28_04920at 5615.023 kb on + strand, within PFR28_04920at 5615.023 kb on + strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.024 kb on - strand, within PFR28_04920at 5615.105 kb on - strand, within PFR28_04920at 5615.144 kb on + strand, within PFR28_04920at 5615.144 kb on + strand, within PFR28_04920at 5615.144 kb on + strand, within PFR28_04920at 5615.144 kb on + strand, within PFR28_04920at 5615.145 kb on - strand, within PFR28_04920at 5615.145 kb on - strand, within PFR28_04920at 5615.145 kb on - strand, within PFR28_04920at 5615.145 kb on - strand, within PFR28_04920at 5615.172 kb on + strand, within PFR28_04920at 5615.173 kb on - strand, within PFR28_04920at 5615.173 kb on - strand, within PFR28_04920at 5615.340 kb on + strandat 5615.340 kb on + strandat 5615.340 kb on + strandat 5615.340 kb on + strandat 5615.341 kb on - strandat 5615.419 kb on + strandat 5615.419 kb on + strandat 5615.419 kb on + strandat 5615.420 kb on - strandat 5615.420 kb on - strandat 5615.420 kb on - strandat 5615.439 kb on + strandat 5615.439 kb on + strandat 5615.440 kb on - strandat 5615.440 kb on - strandat 5615.440 kb on - strandat 5615.440 kb on - strandat 5615.551 kb on + strandat 5615.551 kb on + strandat 5615.552 kb on - strand, within PFR28_04921at 5615.851 kb on - strand, within PFR28_04921at 5615.935 kb on - strandat 5615.958 kb on + strandat 5615.958 kb on + strandat 5615.958 kb on + strandat 5615.959 kb on - strandat 5615.959 kb on - strandat 5615.959 kb on - strandat 5616.059 kb on + strand, within PFR28_04922at 5616.059 kb on + strand, within PFR28_04922at 5616.060 kb on - strand, within PFR28_04922at 5616.060 kb on - strand, within PFR28_04922at 5616.060 kb on - strand, within PFR28_04922at 5616.060 kb on - strand, within PFR28_04922at 5616.109 kb on - strand, within PFR28_04922at 5616.171 kb on - strand, within PFR28_04922at 5616.182 kb on + strand, within PFR28_04922at 5616.315 kb on + strandat 5616.315 kb on + strandat 5616.316 kb on - strandat 5616.352 kb on - strandat 5616.352 kb on - strandat 5616.352 kb on - strandat 5616.580 kb on + strandat 5616.580 kb on + strandat 5616.581 kb on - strandat 5616.581 kb on - strandat 5616.583 kb on + strandat 5616.594 kb on - strandat 5616.611 kb on + strandat 5616.638 kb on + strandat 5616.639 kb on - strandat 5616.639 kb on - strandat 5616.639 kb on - strandat 5616.656 kb on + strand, within PFR28_04924at 5616.657 kb on - strand, within PFR28_04924at 5616.657 kb on - strand, within PFR28_04924at 5616.696 kb on + strand, within PFR28_04924at 5616.696 kb on + strand, within PFR28_04924at 5616.699 kb on - strand, within PFR28_04924at 5616.800 kb on + strand, within PFR28_04924at 5616.800 kb on + strand, within PFR28_04924

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
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5,614,513 + +0.1
5,614,514 - +0.4
5,614,518 + -0.2
5,614,645 - -0.1
5,614,656 + -0.0
5,614,657 - +0.4
5,614,657 - -0.4
5,614,840 + PFR28_04920 0.34 +0.1
5,614,840 + PFR28_04920 0.34 +0.9
5,614,840 + PFR28_04920 0.34 -0.0
5,614,841 - PFR28_04920 0.35 -0.2
5,614,843 + PFR28_04920 0.35 +0.1
5,614,843 + PFR28_04920 0.35 -2.3
5,614,843 + PFR28_04920 0.35 +0.9
5,614,843 + PFR28_04920 0.35 +0.0
5,614,843 + PFR28_04920 0.35 +0.8
5,614,844 - PFR28_04920 0.35 +0.4
5,614,844 - PFR28_04920 0.35 -0.3
5,614,844 - PFR28_04920 0.35 -0.0
5,614,844 - PFR28_04920 0.35 +0.2
5,614,844 - PFR28_04920 0.35 +0.1
5,614,909 + PFR28_04920 0.44 +0.5
5,614,909 + PFR28_04920 0.44 -1.7
5,614,909 + PFR28_04920 0.44 +0.1
5,614,909 + PFR28_04920 0.44 -1.0
5,614,909 + PFR28_04920 0.44 -0.8
5,614,909 + PFR28_04920 0.44 +0.4
5,614,909 + PFR28_04920 0.44 -0.2
5,614,909 + PFR28_04920 0.44 -0.5
5,614,909 + PFR28_04920 0.44 -0.1
5,614,909 + PFR28_04920 0.44 -0.4
5,614,910 - PFR28_04920 0.45 +0.3
5,614,910 - PFR28_04920 0.45 +0.9
5,614,910 - PFR28_04920 0.45 -0.2
5,614,910 - PFR28_04920 0.45 +0.1
5,614,910 - PFR28_04920 0.45 -0.9
5,614,935 + PFR28_04920 0.48 -0.1
5,614,935 + PFR28_04920 0.48 -1.6
5,614,936 - PFR28_04920 0.48 -1.4
5,614,936 - PFR28_04920 0.48 +0.4
5,614,936 - PFR28_04920 0.48 -1.2
5,614,936 - PFR28_04920 0.48 -0.0
5,614,938 - PFR28_04920 0.49 -1.8
5,614,938 - PFR28_04920 0.49 -2.0
5,614,938 - PFR28_04920 0.49 +0.8
5,614,938 - PFR28_04920 0.49 +0.4
5,614,938 - PFR28_04920 0.49 +0.3
5,614,992 + PFR28_04920 0.57 -1.2
5,614,992 + PFR28_04920 0.57 +0.9
5,614,993 - PFR28_04920 0.57 +0.0
5,614,993 - PFR28_04920 0.57 -0.7
5,614,993 - PFR28_04920 0.57 +0.6
5,614,993 - PFR28_04920 0.57 +0.9
5,614,993 - PFR28_04920 0.57 +0.1
5,614,993 - PFR28_04920 0.57 -1.0
5,614,993 - PFR28_04920 0.57 +0.1
5,614,993 - PFR28_04920 0.57 -0.8
5,615,009 - PFR28_04920 0.59 +0.4
5,615,023 + PFR28_04920 0.61 +1.4
5,615,023 + PFR28_04920 0.61 +0.8
5,615,024 - PFR28_04920 0.61 +0.5
5,615,024 - PFR28_04920 0.61 -1.2
5,615,024 - PFR28_04920 0.61 -1.1
5,615,024 - PFR28_04920 0.61 -0.8
5,615,024 - PFR28_04920 0.61 -1.1
5,615,024 - PFR28_04920 0.61 +1.5
5,615,024 - PFR28_04920 0.61 -0.7
5,615,024 - PFR28_04920 0.61 -0.1
5,615,024 - PFR28_04920 0.61 +0.4
5,615,105 - PFR28_04920 0.73 -0.5
5,615,144 + PFR28_04920 0.79 +2.0
5,615,144 + PFR28_04920 0.79 -0.4
5,615,144 + PFR28_04920 0.79 -0.2
5,615,144 + PFR28_04920 0.79 +0.4
5,615,145 - PFR28_04920 0.79 +0.8
5,615,145 - PFR28_04920 0.79 -0.3
5,615,145 - PFR28_04920 0.79 -1.6
5,615,145 - PFR28_04920 0.79 -0.7
5,615,172 + PFR28_04920 0.83 -0.4
5,615,173 - PFR28_04920 0.83 -0.6
5,615,173 - PFR28_04920 0.83 +0.4
5,615,340 + +0.7
5,615,340 + -0.2
5,615,340 + -0.9
5,615,340 + -0.1
5,615,341 - +0.8
5,615,419 + +0.2
5,615,419 + -0.1
5,615,419 + -2.2
5,615,420 - -0.1
5,615,420 - +0.2
5,615,420 - -1.7
5,615,439 + +1.5
5,615,439 + +0.0
5,615,440 - -1.2
5,615,440 - +0.0
5,615,440 - -0.7
5,615,440 - +0.0
5,615,551 + +0.3
5,615,551 + +0.5
5,615,552 - PFR28_04921 0.10 +0.7
5,615,851 - PFR28_04921 0.83 -0.5
5,615,935 - -0.5
5,615,958 + +1.7
5,615,958 + -0.2
5,615,958 + -0.1
5,615,959 - +1.3
5,615,959 - -0.6
5,615,959 - +1.4
5,616,059 + PFR28_04922 0.22 +0.6
5,616,059 + PFR28_04922 0.22 +1.1
5,616,060 - PFR28_04922 0.22 +0.2
5,616,060 - PFR28_04922 0.22 +0.1
5,616,060 - PFR28_04922 0.22 -2.9
5,616,060 - PFR28_04922 0.22 -0.9
5,616,109 - PFR28_04922 0.37 -1.0
5,616,171 - PFR28_04922 0.56 +1.2
5,616,182 + PFR28_04922 0.59 -0.8
5,616,315 + +0.4
5,616,315 + -0.1
5,616,316 - +1.0
5,616,352 - -0.8
5,616,352 - -0.2
5,616,352 - -1.8
5,616,580 + -1.2
5,616,580 + +1.8
5,616,581 - +0.6
5,616,581 - -0.6
5,616,583 + -0.1
5,616,594 - -0.3
5,616,611 + -0.5
5,616,638 + -0.3
5,616,639 - -0.6
5,616,639 - -0.2
5,616,639 - -0.2
5,616,656 + PFR28_04924 0.14 -0.1
5,616,657 - PFR28_04924 0.14 +0.4
5,616,657 - PFR28_04924 0.14 -0.5
5,616,696 + PFR28_04924 0.28 +0.8
5,616,696 + PFR28_04924 0.28 -0.2
5,616,699 - PFR28_04924 0.29 +0.8
5,616,800 + PFR28_04924 0.66 -1.8
5,616,800 + PFR28_04924 0.66 +0.8

Or see this region's nucleotide sequence