Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04865 and PFR28_04866 are separated by 271 nucleotides PFR28_04866 and PFR28_04867 overlap by 1 nucleotides
PFR28_04865: PFR28_04865 - Glutamate--cysteine ligase, at 5,557,973 to 5,559,556
_04865
PFR28_04866: PFR28_04866 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 5,559,828 to 5,560,211
_04866
PFR28_04867: PFR28_04867 - Protein YhgF, at 5,560,211 to 5,562,535
_04867
Position (kb) 5559
5560
5561 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5558.961 kb on + strand, within PFR28_04865 at 5558.961 kb on + strand, within PFR28_04865 at 5558.962 kb on - strand, within PFR28_04865 at 5558.962 kb on - strand, within PFR28_04865 at 5559.008 kb on - strand, within PFR28_04865 at 5559.009 kb on + strand, within PFR28_04865 at 5559.010 kb on - strand, within PFR28_04865 at 5559.010 kb on - strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.165 kb on + strand, within PFR28_04865 at 5559.165 kb on + strand, within PFR28_04865 at 5559.166 kb on - strand, within PFR28_04865 at 5559.166 kb on - strand, within PFR28_04865 at 5559.196 kb on - strand, within PFR28_04865 at 5559.199 kb on - strand, within PFR28_04865 at 5559.259 kb on - strand, within PFR28_04865 at 5559.280 kb on - strand, within PFR28_04865 at 5559.542 kb on + strand at 5559.610 kb on + strand at 5559.611 kb on - strand at 5559.829 kb on + strand at 5559.829 kb on + strand at 5559.829 kb on + strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.832 kb on - strand at 5559.832 kb on - strand at 5559.970 kb on + strand, within PFR28_04866 at 5559.970 kb on + strand, within PFR28_04866 at 5559.971 kb on - strand, within PFR28_04866 at 5559.971 kb on - strand, within PFR28_04866 at 5560.167 kb on + strand, within PFR28_04866 at 5560.168 kb on - strand, within PFR28_04866 at 5560.168 kb on - strand, within PFR28_04866 at 5560.504 kb on + strand, within PFR28_04867 at 5560.504 kb on + strand, within PFR28_04867 at 5560.504 kb on + strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867 at 5560.807 kb on + strand, within PFR28_04867 at 5560.807 kb on + strand, within PFR28_04867 at 5560.808 kb on - strand, within PFR28_04867 at 5560.808 kb on - strand, within PFR28_04867 at 5561.018 kb on - strand, within PFR28_04867 at 5561.018 kb on - strand, within PFR28_04867
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 5,558,961 + PFR28_04865 0.62 +0.8 5,558,961 + PFR28_04865 0.62 +0.8 5,558,962 - PFR28_04865 0.62 -0.2 5,558,962 - PFR28_04865 0.62 +0.8 5,559,008 - PFR28_04865 0.65 +0.8 5,559,009 + PFR28_04865 0.65 +0.8 5,559,010 - PFR28_04865 0.65 +0.8 5,559,010 - PFR28_04865 0.65 +0.8 5,559,099 + PFR28_04865 0.71 +0.8 5,559,099 + PFR28_04865 0.71 +0.8 5,559,099 + PFR28_04865 0.71 +0.8 5,559,099 + PFR28_04865 0.71 +0.8 5,559,165 + PFR28_04865 0.75 +0.8 5,559,165 + PFR28_04865 0.75 -0.2 5,559,166 - PFR28_04865 0.75 +0.8 5,559,166 - PFR28_04865 0.75 +0.8 5,559,196 - PFR28_04865 0.77 +0.8 5,559,199 - PFR28_04865 0.77 -0.2 5,559,259 - PFR28_04865 0.81 +0.8 5,559,280 - PFR28_04865 0.83 -0.2 5,559,542 + -1.1 5,559,610 + -0.5 5,559,611 - -0.3 5,559,829 + +1.3 5,559,829 + -0.2 5,559,829 + -1.0 5,559,830 - -1.4 5,559,830 - -1.4 5,559,830 - +0.4 5,559,830 - -2.5 5,559,831 + -0.0 5,559,831 + +0.7 5,559,831 + -0.9 5,559,831 + -0.5 5,559,831 + +0.3 5,559,831 + +0.9 5,559,832 - +0.2 5,559,832 - +0.7 5,559,970 + PFR28_04866 0.37 +0.1 5,559,970 + PFR28_04866 0.37 +2.2 5,559,971 - PFR28_04866 0.37 -0.2 5,559,971 - PFR28_04866 0.37 -0.2 5,560,167 + PFR28_04866 0.88 +0.6 5,560,168 - PFR28_04866 0.89 +0.2 5,560,168 - PFR28_04866 0.89 +1.6 5,560,504 + PFR28_04867 0.13 -0.8 5,560,504 + PFR28_04867 0.13 +1.1 5,560,504 + PFR28_04867 0.13 -1.0 5,560,505 - PFR28_04867 0.13 -0.0 5,560,505 - PFR28_04867 0.13 -2.4 5,560,505 - PFR28_04867 0.13 +1.1 5,560,807 + PFR28_04867 0.26 +2.5 5,560,807 + PFR28_04867 0.26 +1.3 5,560,808 - PFR28_04867 0.26 -2.2 5,560,808 - PFR28_04867 0.26 +0.9 5,561,018 - PFR28_04867 0.35 +0.5 5,561,018 - PFR28_04867 0.35 +1.5
Or see this region's nucleotide sequence