Strain Fitness in Pseudomonas sp. RS175 around PFR28_04323

Experiment: L-Carnitine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine 10 mM (C)
4,931,164	+		PFR28_04321	0.83	-2.0
4,931,164	+		PFR28_04321	0.83	+0.1
4,931,164	+		PFR28_04321	0.83	+1.2
4,931,164	+		PFR28_04321	0.83	+0.8
4,931,164	+		PFR28_04321	0.83	+0.4
4,931,164	+		PFR28_04321	0.83	-2.6
4,931,165	-		PFR28_04321	0.84	-2.5
4,931,165	-		PFR28_04321	0.84	+0.1
4,931,165	-		PFR28_04321	0.84	-2.2
4,931,165	-		PFR28_04321	0.84	-0.8
4,931,165	-		PFR28_04321	0.84	+1.1
4,931,165	-		PFR28_04321	0.84	-1.0
4,931,165	-		PFR28_04321	0.84	-1.6
4,931,231	-		PFR28_04321	0.88	+1.4
4,931,255	-				-2.9
4,931,255	-				-1.6
4,931,255	-				-1.9
4,931,359	+				-3.0
4,931,360	-				+0.4
4,931,360	-				-0.2
4,931,360	-				+0.2
4,931,491	+		PFR28_04322	0.14	+0.8
4,931,491	+		PFR28_04322	0.14	-0.5
4,931,491	+		PFR28_04322	0.14	-0.1
4,931,491	+		PFR28_04322	0.14	+0.0
4,931,491	+		PFR28_04322	0.14	-0.5
4,931,491	+		PFR28_04322	0.14	-1.2
4,931,492	-		PFR28_04322	0.14	-0.6
4,931,492	-		PFR28_04322	0.14	-2.0
4,931,492	-		PFR28_04322	0.14	+0.1
4,931,509	+		PFR28_04322	0.17	-0.0
4,931,509	+		PFR28_04322	0.17	-1.1
4,931,510	-		PFR28_04322	0.18	+0.4
4,931,510	-		PFR28_04322	0.18	-0.2
4,931,510	-		PFR28_04322	0.18	+2.8
4,931,608	+		PFR28_04322	0.35	-0.0
4,931,974	+				-1.9
4,931,974	+				-1.2
4,931,991	+				-0.1
4,931,991	+				-0.9
4,931,991	+				-0.5
4,931,991	+				-2.3
4,931,991	+				-1.2
4,931,991	+				+0.8
4,931,991	+				-0.9
4,931,991	+				-0.3
4,931,992	-				+0.5
4,931,992	-				+1.1
4,931,992	-				-0.3
4,931,992	-				-0.2
4,931,992	-				+0.2
4,931,992	-				-0.1
4,931,992	-				+0.2
4,931,992	-				-0.1
4,931,992	-				+0.3
4,931,997	+				+0.1
4,931,997	+				-0.4
4,931,998	-				+1.1
4,931,998	-				-0.0
4,932,013	+				+0.9
4,932,013	+				-1.1
4,932,013	+				+1.3
4,932,013	+				-0.2
4,932,013	+				+1.4
4,932,013	+				+0.8
4,932,013	+				-1.0
4,932,014	-				-0.3
4,932,014	-				+0.4
4,932,014	-				-0.8
4,932,014	-				-2.2
4,932,014	-				-0.1
4,932,014	-				-1.3
4,932,014	-				-0.0
4,932,014	-				+1.1
4,932,014	-				-0.1
4,932,018	+				-0.1
4,932,018	+				-0.6
4,932,018	+				+0.8
4,932,018	+				+2.5
4,932,018	+				-0.1
4,932,018	+				-0.5
4,932,018	+				-0.8
4,932,018	+				+1.2
4,932,019	-				+0.5
4,932,019	-				-0.4
4,932,019	-				+1.2
4,932,044	+				+0.6
4,932,045	-				-0.2
4,932,134	+		PFR28_04323	0.22	+0.6
4,932,134	+		PFR28_04323	0.22	-0.6
4,932,134	+		PFR28_04323	0.22	+0.4
4,932,135	-		PFR28_04323	0.22	-0.4
4,932,135	-		PFR28_04323	0.22	+0.4
4,932,135	-		PFR28_04323	0.22	+0.1
4,932,135	-		PFR28_04323	0.22	-0.6
4,932,135	-		PFR28_04323	0.22	+0.8
4,932,156	+		PFR28_04323	0.32	-0.1
4,932,156	+		PFR28_04323	0.32	+0.6
4,932,156	+		PFR28_04323	0.32	+3.1
4,932,156	+		PFR28_04323	0.32	+1.1
4,932,157	-		PFR28_04323	0.33	+0.4
4,932,157	-		PFR28_04323	0.33	+1.9
4,932,157	-		PFR28_04323	0.33	+1.6
4,932,157	-		PFR28_04323	0.33	-2.0
4,932,176	+		PFR28_04323	0.42	-0.1
4,932,176	+		PFR28_04323	0.42	+0.9
4,932,176	+		PFR28_04323	0.42	-0.6
4,932,176	+		PFR28_04323	0.42	+0.5
4,932,177	-		PFR28_04323	0.42	+0.8
4,932,177	-		PFR28_04323	0.42	+0.2
4,932,177	-		PFR28_04323	0.42	+0.1
4,932,177	-		PFR28_04323	0.42	+1.4
4,932,177	-		PFR28_04323	0.42	+0.8
4,932,179	+		PFR28_04323	0.43	-1.2
4,932,179	+		PFR28_04323	0.43	+0.5
4,932,179	+		PFR28_04323	0.43	+0.2
4,932,179	+		PFR28_04323	0.43	+0.2
4,932,179	+		PFR28_04323	0.43	+0.8
4,932,180	-		PFR28_04323	0.44	+1.0
4,932,180	-		PFR28_04323	0.44	+1.2
4,932,180	-		PFR28_04323	0.44	+0.4
4,932,180	-		PFR28_04323	0.44	+0.5
4,932,246	+		PFR28_04323	0.75	+0.8
4,932,246	+		PFR28_04323	0.75	+0.6
4,932,247	-		PFR28_04323	0.76	+1.2
4,932,308	+				-0.3
4,932,308	+				+0.7
4,932,308	+				-2.4
4,932,308	+				-1.2
4,932,308	+				-0.8
4,932,308	+				-1.6
4,932,308	+				-0.8
4,932,309	-				+0.8
4,932,309	-				-0.9
4,932,309	-				-0.2
4,932,309	-				-0.1
4,932,309	-				+0.4
4,932,309	-				-0.2
4,932,315	-				+0.4
4,932,339	+		PFR28_04324	0.14	-0.3
4,932,339	+		PFR28_04324	0.14	-0.6
4,932,340	-		PFR28_04324	0.14	-0.7
4,932,340	-		PFR28_04324	0.14	+0.8
4,932,340	-		PFR28_04324	0.14	-0.2
4,932,518	-		PFR28_04324	0.70	-0.3
4,932,518	-		PFR28_04324	0.70	-0.8
4,932,518	-		PFR28_04324	0.70	-0.4
4,932,631	+				+0.8
4,932,631	+				-0.1
4,932,631	+				-0.2
4,932,631	+				-0.1
4,932,631	+				-2.2
4,932,631	+				-2.2
4,932,631	+				+0.4
4,932,631	+				-0.0
4,932,631	+				+0.1
4,932,632	-				+0.8
4,932,632	-				+0.8
4,932,632	-				-1.1
4,932,632	-				+0.1
4,932,632	-				+0.1
4,932,633	+				-1.0
4,932,633	+				-1.2
4,932,633	+				-2.6
4,932,633	+				+0.8
4,932,633	+				-1.5
4,932,633	+				-1.6
4,932,633	+				+0.2
4,932,633	+				+0.9
4,932,634	-				+0.4
4,932,634	-				+2.1
4,932,634	-				+0.2
4,932,634	-				+1.2
4,932,793	-				+0.4
4,932,896	-				-0.1
4,932,901	+				+0.8
4,932,901	+				+0.7
4,932,902	-				+0.1
4,933,087	+		PFR28_04325	0.25	-0.8
4,933,088	-		PFR28_04325	0.25	-0.5
4,933,097	+		PFR28_04325	0.26	-1.9
4,933,097	+		PFR28_04325	0.26	-1.3
4,933,098	-		PFR28_04325	0.26	-0.6
4,933,169	+		PFR28_04325	0.38	-1.7
4,933,169	+		PFR28_04325	0.38	-2.8
4,933,169	+		PFR28_04325	0.38	+0.8
4,933,169	+		PFR28_04325	0.38	-0.8
4,933,169	+		PFR28_04325	0.38	-2.6
4,933,170	-		PFR28_04325	0.38	-0.8
4,933,170	-		PFR28_04325	0.38	-2.7
4,933,170	-		PFR28_04325	0.38	-2.6
4,933,170	-		PFR28_04325	0.38	-0.6