Strain Fitness in Pseudomonas sp. RS175 around PFR28_04224

Experiment: L-Carnitine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine 10 mM (C)
4,826,712	+		PFR28_04223	0.51	-1.0
4,826,713	-		PFR28_04223	0.51	+0.3
4,826,713	-		PFR28_04223	0.51	-0.2
4,826,790	+		PFR28_04223	0.55	-1.1
4,826,790	+		PFR28_04223	0.55	+0.5
4,826,790	+		PFR28_04223	0.55	+1.6
4,826,791	-		PFR28_04223	0.55	-0.2
4,826,791	-		PFR28_04223	0.55	-0.8
4,826,874	+		PFR28_04223	0.60	+0.8
4,826,874	+		PFR28_04223	0.60	+0.3
4,827,045	+		PFR28_04223	0.71	-1.2
4,827,045	+		PFR28_04223	0.71	+1.4
4,827,045	+		PFR28_04223	0.71	+1.0
4,827,046	-		PFR28_04223	0.71	-2.0
4,827,046	-		PFR28_04223	0.71	+1.2
4,827,046	-		PFR28_04223	0.71	-0.9
4,827,046	-		PFR28_04223	0.71	-0.4
4,827,046	-		PFR28_04223	0.71	-0.4
4,827,046	-		PFR28_04223	0.71	-0.7
4,827,046	-		PFR28_04223	0.71	+1.1
4,827,049	+		PFR28_04223	0.71	+0.1
4,827,050	-		PFR28_04223	0.71	+0.2
4,827,050	-		PFR28_04223	0.71	-0.5
4,827,050	-		PFR28_04223	0.71	+0.5
4,827,123	+		PFR28_04223	0.75	-2.0
4,827,123	+		PFR28_04223	0.75	+0.9
4,827,123	+		PFR28_04223	0.75	-1.2
4,827,123	+		PFR28_04223	0.75	+0.2
4,827,124	-		PFR28_04223	0.75	-1.0
4,827,135	+		PFR28_04223	0.76	-0.7
4,827,135	+		PFR28_04223	0.76	+1.0
4,827,135	+		PFR28_04223	0.76	+0.1
4,827,135	+		PFR28_04223	0.76	+0.5
4,827,136	-		PFR28_04223	0.76	+0.3
4,827,136	-		PFR28_04223	0.76	-0.1
4,827,136	-		PFR28_04223	0.76	+0.0
4,827,136	-		PFR28_04223	0.76	-0.3
4,827,235	+		PFR28_04223	0.82	+0.7
4,827,236	-		PFR28_04223	0.82	-0.4
4,827,361	+		PFR28_04223	0.90	-0.8
4,827,374	+				-0.8
4,827,375	-				-1.5
4,827,521	+				+0.0
4,827,522	-				+0.4
4,827,572	+				+2.4
4,827,572	+				-0.5
4,827,573	-				+0.8
4,827,573	-				+0.2
4,827,573	-				+0.3
4,827,787	-		PFR28_04224	0.79	+0.1
4,827,787	-		PFR28_04224	0.79	+1.2
4,827,847	-				-0.4
4,827,891	+				+0.4
4,827,903	+				+0.2
4,827,903	+				+0.1
4,827,904	-				-0.4
4,827,904	-				-0.0
4,827,904	-				+0.2
4,827,904	-				+0.2
4,827,904	-				-0.8
4,827,904	-				+0.8
4,827,904	-				-0.3
4,827,957	+				-0.4
4,828,031	+		PFR28_04225	0.12	+1.2
4,828,031	+		PFR28_04225	0.12	+1.1
4,828,031	+		PFR28_04225	0.12	-0.3
4,828,032	-		PFR28_04225	0.12	-1.3
4,828,032	-		PFR28_04225	0.12	-1.0
4,828,032	-		PFR28_04225	0.12	+0.9
4,828,032	-		PFR28_04225	0.12	+0.7
4,828,049	+		PFR28_04225	0.16	+0.8
4,828,049	+		PFR28_04225	0.16	+0.1
4,828,050	-		PFR28_04225	0.16	+0.4
4,828,054	-		PFR28_04225	0.17	-0.5
4,828,054	-		PFR28_04225	0.17	+0.0
4,828,054	-		PFR28_04225	0.17	-0.6
4,828,075	-		PFR28_04225	0.21	+0.9
4,828,111	+		PFR28_04225	0.29	-0.3
4,828,111	+		PFR28_04225	0.29	-0.4
4,828,111	+		PFR28_04225	0.29	+0.3
4,828,111	+		PFR28_04225	0.29	+0.1
4,828,111	+		PFR28_04225	0.29	+1.1
4,828,111	+		PFR28_04225	0.29	-0.4
4,828,111	+		PFR28_04225	0.29	-0.1
4,828,111	+		PFR28_04225	0.29	+0.7
4,828,112	-		PFR28_04225	0.29	-0.2
4,828,112	-		PFR28_04225	0.29	-1.5
4,828,112	-		PFR28_04225	0.29	+0.4
4,828,112	-		PFR28_04225	0.29	+0.2
4,828,112	-		PFR28_04225	0.29	-0.2
4,828,115	+		PFR28_04225	0.30	-1.7
4,828,115	+		PFR28_04225	0.30	-0.2
4,828,115	+		PFR28_04225	0.30	-0.2
4,828,115	+		PFR28_04225	0.30	-0.1
4,828,115	+		PFR28_04225	0.30	+0.8
4,828,115	+		PFR28_04225	0.30	-1.7
4,828,115	+		PFR28_04225	0.30	-1.2
4,828,115	+		PFR28_04225	0.30	+0.4
4,828,115	+		PFR28_04225	0.30	+0.7
4,828,115	+		PFR28_04225	0.30	-0.1
4,828,115	+		PFR28_04225	0.30	+0.5
4,828,115	+		PFR28_04225	0.30	-0.6
4,828,116	-		PFR28_04225	0.30	-0.0
4,828,116	-		PFR28_04225	0.30	-0.7
4,828,116	-		PFR28_04225	0.30	-1.2
4,828,116	-		PFR28_04225	0.30	-0.4
4,828,116	-		PFR28_04225	0.30	+0.1
4,828,116	-		PFR28_04225	0.30	+0.1
4,828,116	-		PFR28_04225	0.30	+0.1
4,828,116	-		PFR28_04225	0.30	-0.1
4,828,116	-		PFR28_04225	0.30	-0.5
4,828,116	-		PFR28_04225	0.30	-0.7
4,828,144	-		PFR28_04225	0.36	+0.1
4,828,249	-		PFR28_04225	0.58	+0.6
4,828,249	-		PFR28_04225	0.58	+0.4
4,828,249	-		PFR28_04225	0.58	-0.8
4,828,249	-		PFR28_04225	0.58	+0.3
4,828,249	-		PFR28_04225	0.58	+0.8
4,828,259	+		PFR28_04225	0.60	-0.2
4,828,259	+		PFR28_04225	0.60	-0.3
4,828,260	-		PFR28_04225	0.60	-0.7
4,828,260	-		PFR28_04225	0.60	+1.4
4,828,284	+		PFR28_04225	0.65	-1.5
4,828,287	-		PFR28_04225	0.66	-0.3
4,828,287	-		PFR28_04225	0.66	+1.2
4,828,308	+		PFR28_04225	0.70	+0.8
4,828,309	-		PFR28_04225	0.70	+0.3
4,828,323	+		PFR28_04225	0.73	+0.0
4,828,323	+		PFR28_04225	0.73	-1.8
4,828,323	+		PFR28_04225	0.73	+0.2
4,828,324	-		PFR28_04225	0.74	-0.4
4,828,324	-		PFR28_04225	0.74	+0.1
4,828,324	-		PFR28_04225	0.74	-0.8
4,828,324	-		PFR28_04225	0.74	+1.7
4,828,406	+				-0.9
4,828,406	+				+0.8
4,828,406	+				-0.4
4,828,406	+				+0.7
4,828,407	-				+1.3
4,828,422	+				-1.0
4,828,422	+				-0.2
4,828,422	+				+0.8
4,828,423	-				+1.2
4,828,427	+				-0.6
4,828,428	-				+2.1
4,828,444	-				-0.6
4,828,447	+				-0.8
4,828,447	+				-1.2
4,828,448	-				+0.4
4,828,448	-				+0.1
4,828,448	-				-0.6
4,828,451	+				-0.8
4,828,451	+				+0.5
4,828,451	+				+0.3
4,828,452	-				-0.7
4,828,488	+				+0.4
4,828,488	+				-0.9
4,828,488	+				-0.3
4,828,488	+				-0.1
4,828,488	+				-0.2
4,828,488	+				-0.6
4,828,488	+				-1.2
4,828,488	+				-0.1
4,828,488	+				-0.8
4,828,489	-				-1.0
4,828,489	-				-0.3
4,828,489	-				+0.3
4,828,489	-				-1.1
4,828,489	-				+0.5
4,828,489	-				+0.6
4,828,489	-				-1.0
4,828,489	-				+0.5
4,828,489	-				-3.1
4,828,489	-				+1.4
4,828,489	-				+0.6
4,828,585	-				+0.3
4,828,640	+				+0.1
4,828,641	-				+0.6
4,828,654	+				-0.6
4,828,654	+				-0.1
4,828,654	+				-0.2
4,828,654	+				-1.0
4,828,654	+				-0.8
4,828,655	-				+0.2
4,828,655	-				+0.2
4,828,655	-				-1.5
4,828,798	+		PFR28_04226	0.27	+0.6
4,828,798	+		PFR28_04226	0.27	+1.2
4,828,798	+		PFR28_04226	0.27	-1.7
4,828,798	+		PFR28_04226	0.27	+0.9
4,828,799	-		PFR28_04226	0.27	+0.4
4,828,799	-		PFR28_04226	0.27	-0.2
4,828,799	-		PFR28_04226	0.27	-0.1
4,828,799	-		PFR28_04226	0.27	+1.1
4,828,799	-		PFR28_04226	0.27	-1.1