Strain Fitness in Pseudomonas sp. RS175 around PFR28_03880

Experiment: L-Carnitine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine 10 mM (C)
4,455,313	+		PFR28_03879	0.46	-0.9
4,455,313	+		PFR28_03879	0.46	+1.0
4,455,313	+		PFR28_03879	0.46	-1.4
4,455,313	+		PFR28_03879	0.46	+0.6
4,455,313	+		PFR28_03879	0.46	+1.8
4,455,313	+		PFR28_03879	0.46	+1.1
4,455,313	+		PFR28_03879	0.46	-1.0
4,455,314	-		PFR28_03879	0.46	+1.2
4,455,314	-		PFR28_03879	0.46	-0.6
4,455,314	-		PFR28_03879	0.46	+0.0
4,455,314	-		PFR28_03879	0.46	+0.7
4,455,314	-		PFR28_03879	0.46	-0.2
4,455,314	-		PFR28_03879	0.46	-0.5
4,455,314	-		PFR28_03879	0.46	-0.8
4,455,314	-		PFR28_03879	0.46	+0.3
4,455,340	+		PFR28_03879	0.47	-0.2
4,455,340	+		PFR28_03879	0.47	+0.2
4,455,340	+		PFR28_03879	0.47	-0.8
4,455,340	+		PFR28_03879	0.47	+0.8
4,455,340	+		PFR28_03879	0.47	-0.8
4,455,340	+		PFR28_03879	0.47	+0.0
4,455,340	+		PFR28_03879	0.47	+0.3
4,455,340	+		PFR28_03879	0.47	+1.4
4,455,340	+		PFR28_03879	0.47	+0.0
4,455,340	+		PFR28_03879	0.47	+0.4
4,455,340	+		PFR28_03879	0.47	+1.2
4,455,340	+		PFR28_03879	0.47	+0.2
4,455,340	+		PFR28_03879	0.47	-0.2
4,455,340	+		PFR28_03879	0.47	-0.6
4,455,340	+		PFR28_03879	0.47	+0.9
4,455,340	+		PFR28_03879	0.47	-0.4
4,455,340	+		PFR28_03879	0.47	-3.0
4,455,341	-		PFR28_03879	0.47	+0.2
4,455,341	-		PFR28_03879	0.47	+0.5
4,455,341	-		PFR28_03879	0.47	-0.2
4,455,341	-		PFR28_03879	0.47	-0.4
4,455,341	-		PFR28_03879	0.47	+0.8
4,455,341	-		PFR28_03879	0.47	-1.5
4,455,341	-		PFR28_03879	0.47	+0.2
4,455,341	-		PFR28_03879	0.47	+1.8
4,455,341	-		PFR28_03879	0.47	-0.5
4,455,341	-		PFR28_03879	0.47	-0.7
4,455,341	-		PFR28_03879	0.47	-0.6
4,455,341	-		PFR28_03879	0.47	-0.1
4,455,341	-		PFR28_03879	0.47	-0.2
4,455,341	-		PFR28_03879	0.47	-1.0
4,455,341	-		PFR28_03879	0.47	-0.6
4,455,341	-		PFR28_03879	0.47	-0.5
4,455,341	-		PFR28_03879	0.47	-0.5
4,455,380	+		PFR28_03879	0.50	-0.2
4,455,381	-		PFR28_03879	0.50	+0.5
4,455,532	+		PFR28_03879	0.58	+0.7
4,455,532	+		PFR28_03879	0.58	+0.1
4,455,532	+		PFR28_03879	0.58	-0.3
4,455,533	-		PFR28_03879	0.59	+0.5
4,455,533	-		PFR28_03879	0.59	+2.4
4,455,533	-		PFR28_03879	0.59	+0.0
4,455,589	+		PFR28_03879	0.62	-2.0
4,455,590	-		PFR28_03879	0.62	+0.5
4,455,590	-		PFR28_03879	0.62	-0.4
4,455,590	-		PFR28_03879	0.62	+0.4
4,455,590	-		PFR28_03879	0.62	+0.7
4,455,754	+		PFR28_03879	0.71	-0.9
4,455,754	+		PFR28_03879	0.71	-1.4
4,455,754	+		PFR28_03879	0.71	-0.5
4,455,754	+		PFR28_03879	0.71	-0.3
4,455,755	-		PFR28_03879	0.71	+1.3
4,455,755	-		PFR28_03879	0.71	-0.3
4,455,755	-		PFR28_03879	0.71	+0.7
4,455,898	+		PFR28_03879	0.80	+1.0
4,455,898	+		PFR28_03879	0.80	+0.8
4,455,898	+		PFR28_03879	0.80	-0.5
4,455,899	-		PFR28_03879	0.80	-1.1
4,455,899	-		PFR28_03879	0.80	-0.7
4,456,006	+		PFR28_03879	0.86	-0.1
4,456,179	+				-0.1
4,456,179	+				+1.0
4,456,180	-				-0.7
4,456,180	-				+0.3
4,456,209	+				-0.4
4,456,210	-				+0.5
4,456,243	+				-2.4
4,456,243	+				-0.6
4,456,243	+				+0.8
4,456,243	+				-1.3
4,456,244	-				+0.8
4,456,244	-				+2.4
4,456,244	-				-0.3
4,456,244	-				+2.2
4,456,244	-				-0.0
4,456,256	-				+0.3
4,456,276	+				-0.5
4,456,276	+				-0.5
4,456,276	+				+0.4
4,456,276	+				+0.0
4,456,276	+				-0.2
4,456,276	+				+0.7
4,456,276	+				+0.8
4,456,276	+				-1.9
4,456,277	-				+1.0
4,456,277	-				-0.8
4,456,277	-				-0.2
4,456,277	-				+0.4
4,456,277	-				-0.7
4,456,277	-				+0.9
4,456,277	-				+0.1
4,456,277	-				-0.4
4,456,277	-				+0.0
4,456,277	-				-1.9
4,456,277	-				+0.9
4,456,277	-				+0.8
4,456,277	-				+1.0
4,456,334	+				-2.0
4,456,334	+				-0.4
4,456,334	+				+0.8
4,456,334	+				-0.0
4,456,334	+				-0.7
4,456,335	-				-0.2
4,456,335	-				-0.1
4,456,335	-				+0.6
4,456,335	-				-1.2
4,456,335	-				+0.1
4,456,335	-				+2.4
4,456,445	+		PFR28_03880	0.27	+0.4
4,456,446	-		PFR28_03880	0.27	-0.4
4,456,645	+		PFR28_03880	0.58	+0.8
4,456,646	-		PFR28_03880	0.58	+0.5
4,456,646	-		PFR28_03880	0.58	+2.0
4,456,646	-		PFR28_03880	0.58	-0.2
4,456,646	-		PFR28_03880	0.58	-0.5
4,456,802	-		PFR28_03880	0.82	+0.6
4,456,802	-		PFR28_03880	0.82	-2.0
4,456,802	-		PFR28_03880	0.82	+0.8
4,456,802	-		PFR28_03880	0.82	+0.5
4,456,912	+				-0.2
4,456,912	+				+0.6
4,456,912	+				-1.6
4,456,913	-				+0.2
4,457,034	+				+0.1
4,457,034	+				+0.5
4,457,034	+				-1.3
4,457,034	+				-1.1
4,457,035	-				+0.5
4,457,036	+				-0.8
4,457,036	+				-0.5
4,457,036	+				-0.8
4,457,036	+				+0.0
4,457,036	+				-2.1
4,457,036	+				+0.2
4,457,036	+				+0.6
4,457,036	+				-0.2
4,457,037	-				+0.3
4,457,037	-				+0.3
4,457,037	-				+0.4
4,457,037	-				+0.1
4,457,037	-				-1.6
4,457,037	-				-0.1
4,457,037	-				-1.0
4,457,037	-				+0.6
4,457,037	-				-0.1
4,457,037	-				+0.0
4,457,037	-				+0.4
4,457,037	-				-0.5
4,457,037	-				+1.3
4,457,037	-				+0.2
4,457,037	-				+1.0
4,457,081	-				-0.5
4,457,115	+				+0.1
4,457,115	+				-0.2
4,457,115	+				+0.6
4,457,116	-				-0.0
4,457,131	+				+0.0
4,457,131	+				+0.9
4,457,131	+				-0.5
4,457,131	+				-1.1
4,457,132	-				-0.3
4,457,132	-				-0.2
4,457,132	-				+0.1
4,457,132	-				+0.1
4,457,293	+		PFR28_03881	0.57	-0.9
4,457,293	+		PFR28_03881	0.57	-0.3
4,457,293	+		PFR28_03881	0.57	+0.9
4,457,293	+		PFR28_03881	0.57	+0.4
4,457,294	-		PFR28_03881	0.58	+0.1
4,457,294	-		PFR28_03881	0.58	-0.0
4,457,317	+		PFR28_03881	0.66	+0.9
4,457,317	+		PFR28_03881	0.66	+0.5
4,457,317	+		PFR28_03881	0.66	-1.4
4,457,317	+		PFR28_03881	0.66	-0.4
4,457,317	+		PFR28_03881	0.66	+2.1
4,457,317	+		PFR28_03881	0.66	-0.2
4,457,317	+		PFR28_03881	0.66	-0.5
4,457,317	+		PFR28_03881	0.66	-0.4
4,457,317	+		PFR28_03881	0.66	-1.5
4,457,318	-		PFR28_03881	0.66	+0.3
4,457,318	-		PFR28_03881	0.66	+0.6
4,457,318	-		PFR28_03881	0.66	-0.8
4,457,318	-		PFR28_03881	0.66	-2.0
4,457,318	-		PFR28_03881	0.66	-0.5
4,457,318	-		PFR28_03881	0.66	-0.2
4,457,318	-		PFR28_03881	0.66	+0.2
4,457,318	-		PFR28_03881	0.66	-0.0
4,457,318	-		PFR28_03881	0.66	-0.1
4,457,318	-		PFR28_03881	0.66	-0.5
4,457,319	+		PFR28_03881	0.66	+0.8
4,457,319	+		PFR28_03881	0.66	-0.4
4,457,319	+		PFR28_03881	0.66	-1.0
4,457,319	+		PFR28_03881	0.66	+0.1
4,457,319	+		PFR28_03881	0.66	+0.6
4,457,319	+		PFR28_03881	0.66	-1.2
4,457,319	+		PFR28_03881	0.66	-0.0
4,457,319	+		PFR28_03881	0.66	+0.1
4,457,319	+		PFR28_03881	0.66	-0.8
4,457,319	+		PFR28_03881	0.66	-0.7
4,457,319	+		PFR28_03881	0.66	-0.5
4,457,319	+		PFR28_03881	0.66	-1.0
4,457,319	+		PFR28_03881	0.66	-3.3
4,457,319	+		PFR28_03881	0.66	-2.1
4,457,320	-		PFR28_03881	0.67	+0.2
4,457,320	-		PFR28_03881	0.67	-0.2
4,457,320	-		PFR28_03881	0.67	+0.8
4,457,320	-		PFR28_03881	0.67	-0.2
4,457,320	-		PFR28_03881	0.67	-0.5
4,457,320	-		PFR28_03881	0.67	-0.8
4,457,320	-		PFR28_03881	0.67	-2.2
4,457,320	-		PFR28_03881	0.67	-0.2
4,457,355	-		PFR28_03881	0.79	+0.7
4,457,408	+				+0.3
4,457,408	+				+0.1
4,457,408	+				-0.4
4,457,408	+				-1.0
4,457,408	+				-1.0
4,457,409	-				+0.6
4,457,409	-				+0.0
4,457,409	-				+0.0
4,457,409	-				-1.8