Strain Fitness in Pseudomonas sp. RS175 around PFR28_03254

Experiment: L-Carnitine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine 10 mM (C)
3,763,754	+		PFR28_03252	0.44	+0.4
3,763,866	+		PFR28_03252	0.60	+0.6
3,763,866	+		PFR28_03252	0.60	+0.5
3,763,866	+		PFR28_03252	0.60	+1.5
3,763,866	+		PFR28_03252	0.60	+1.0
3,763,866	+		PFR28_03252	0.60	-0.3
3,763,866	+		PFR28_03252	0.60	+0.3
3,763,866	+		PFR28_03252	0.60	+0.8
3,763,866	+		PFR28_03252	0.60	-0.1
3,763,867	-		PFR28_03252	0.60	+1.6
3,763,867	-		PFR28_03252	0.60	-0.7
3,763,867	-		PFR28_03252	0.60	+0.2
3,763,867	-		PFR28_03252	0.60	+0.5
3,763,867	-		PFR28_03252	0.60	+0.7
3,763,909	+		PFR28_03252	0.66	-0.7
3,763,909	+		PFR28_03252	0.66	-0.2
3,764,137	+				-0.6
3,764,138	-				+1.0
3,764,138	-				-0.9
3,764,138	-				+0.5
3,764,138	-				+0.4
3,764,138	-				+0.1
3,764,169	+				+0.8
3,764,169	+				+1.0
3,764,170	-				-1.2
3,764,299	-		PFR28_03253	0.29	-1.3
3,764,301	+		PFR28_03253	0.29	+1.1
3,764,301	+		PFR28_03253	0.29	+0.3
3,764,301	+		PFR28_03253	0.29	+1.0
3,764,301	+		PFR28_03253	0.29	-0.0
3,764,301	+		PFR28_03253	0.29	+0.9
3,764,302	-		PFR28_03253	0.30	+0.9
3,764,302	-		PFR28_03253	0.30	+0.6
3,764,307	+		PFR28_03253	0.31	+0.8
3,764,307	+		PFR28_03253	0.31	+1.5
3,764,307	+		PFR28_03253	0.31	+0.4
3,764,307	+		PFR28_03253	0.31	+0.7
3,764,307	+		PFR28_03253	0.31	+0.5
3,764,307	+		PFR28_03253	0.31	-0.4
3,764,307	+		PFR28_03253	0.31	+0.6
3,764,308	-		PFR28_03253	0.31	+0.6
3,764,308	-		PFR28_03253	0.31	+0.7
3,764,308	-		PFR28_03253	0.31	+1.6
3,764,308	-		PFR28_03253	0.31	-0.9
3,764,308	-		PFR28_03253	0.31	-0.4
3,764,343	+		PFR28_03253	0.39	+0.9
3,764,343	+		PFR28_03253	0.39	+0.0
3,764,343	+		PFR28_03253	0.39	-0.3
3,764,343	+		PFR28_03253	0.39	+1.4
3,764,343	+		PFR28_03253	0.39	+1.1
3,764,344	-		PFR28_03253	0.39	-0.6
3,764,344	-		PFR28_03253	0.39	+0.4
3,764,344	-		PFR28_03253	0.39	+0.1
3,764,376	-		PFR28_03253	0.46	+0.6
3,764,376	-		PFR28_03253	0.46	+0.6
3,764,384	+		PFR28_03253	0.48	-0.0
3,764,384	+		PFR28_03253	0.48	+1.4
3,764,384	+		PFR28_03253	0.48	-0.1
3,764,384	+		PFR28_03253	0.48	+0.5
3,764,384	+		PFR28_03253	0.48	+0.6
3,764,385	-		PFR28_03253	0.48	+0.3
3,764,385	-		PFR28_03253	0.48	+0.8
3,764,385	-		PFR28_03253	0.48	+1.3
3,764,385	-		PFR28_03253	0.48	+0.7
3,764,385	-		PFR28_03253	0.48	+0.9
3,764,385	-		PFR28_03253	0.48	+0.5
3,764,390	+		PFR28_03253	0.49	+1.1
3,764,390	+		PFR28_03253	0.49	+0.1
3,764,391	-		PFR28_03253	0.50	+1.2
3,764,391	-		PFR28_03253	0.50	+1.0
3,764,391	-		PFR28_03253	0.50	+0.8
3,764,391	-		PFR28_03253	0.50	-0.4
3,764,490	+		PFR28_03253	0.72	+2.1
3,764,490	+		PFR28_03253	0.72	-1.4
3,764,490	+		PFR28_03253	0.72	+1.7
3,764,490	+		PFR28_03253	0.72	+0.9
3,764,490	+		PFR28_03253	0.72	+1.0
3,764,491	-		PFR28_03253	0.72	+0.2
3,764,491	-		PFR28_03253	0.72	+1.5
3,764,597	+				+0.6
3,764,597	+				+1.3
3,764,597	+				+0.4
3,764,597	+				+1.4
3,764,597	+				+1.0
3,764,598	-				+1.3
3,764,598	-				+0.3
3,764,598	-				+0.4
3,764,598	-				+0.3
3,764,598	-				+0.7
3,764,619	+				-1.7
3,764,619	+				-0.5
3,764,619	+				+0.5
3,764,619	+				+0.4
3,764,619	+				+0.7
3,764,619	+				+0.9
3,764,620	-				-0.3
3,764,620	-				+1.1
3,764,620	-				+0.4
3,764,620	-				+0.3
3,764,620	-				+0.3
3,764,620	-				+0.3
3,764,620	-				+0.6
3,764,656	+				+0.4
3,764,656	+				+0.2
3,764,656	+				+0.1
3,764,656	+				+1.8
3,764,657	-				+1.0
3,764,657	-				+0.2
3,764,706	+		PFR28_03254	0.22	+0.1
3,764,706	+		PFR28_03254	0.22	+0.8
3,764,706	+		PFR28_03254	0.22	+0.8
3,764,707	-		PFR28_03254	0.22	+1.1
3,764,707	-		PFR28_03254	0.22	+1.1
3,764,707	-		PFR28_03254	0.22	+0.6
3,764,707	-		PFR28_03254	0.22	+1.1
3,764,707	-		PFR28_03254	0.22	+0.1
3,764,772	+		PFR28_03254	0.38	-1.0
3,764,772	+		PFR28_03254	0.38	+0.2
3,764,773	-		PFR28_03254	0.38	+2.6
3,764,773	-		PFR28_03254	0.38	+0.4
3,764,773	-		PFR28_03254	0.38	-0.1
3,764,773	-		PFR28_03254	0.38	+1.2
3,764,773	-		PFR28_03254	0.38	+0.5
3,764,773	-		PFR28_03254	0.38	-1.0
3,764,773	-		PFR28_03254	0.38	+1.4
3,764,815	+		PFR28_03254	0.48	+1.1
3,764,816	-		PFR28_03254	0.49	+0.8
3,764,913	+		PFR28_03254	0.72	+0.2
3,764,913	+		PFR28_03254	0.72	+0.5
3,764,914	-		PFR28_03254	0.73	+0.5
3,764,914	-		PFR28_03254	0.73	+0.2
3,764,914	-		PFR28_03254	0.73	+0.3
3,764,914	-		PFR28_03254	0.73	+1.8
3,764,914	-		PFR28_03254	0.73	+1.0
3,764,941	+		PFR28_03254	0.79	+1.3
3,764,942	-		PFR28_03254	0.79	+0.5
3,765,008	-				+1.2
3,765,053	+				+0.7
3,765,053	+				+0.5
3,765,053	+				+0.2
3,765,053	+				+0.7
3,765,053	+				+0.2
3,765,053	+				+0.8
3,765,053	+				+0.8
3,765,053	+				-0.1
3,765,054	-				+0.5
3,765,054	-				+0.3
3,765,057	+				+0.1
3,765,057	+				+0.8
3,765,057	+				+0.9
3,765,057	+				+0.1
3,765,058	-				-0.4
3,765,058	-				-0.2
3,765,058	-				-0.9
3,765,058	-				+0.4
3,765,058	-				+0.5
3,765,058	-				-2.4
3,765,058	-				-0.3
3,765,067	+				+0.6
3,765,069	+				+0.3
3,765,069	+				+0.3
3,765,069	+				+0.0
3,765,069	+				+1.6
3,765,069	+				+0.7
3,765,069	+				-0.1
3,765,069	+				+3.1
3,765,070	-				-0.4
3,765,070	-				+0.7
3,765,070	-				-0.0
3,765,070	-				-0.5
3,765,070	-				+0.8
3,765,070	-				+0.7
3,765,326	+				-1.5
3,765,326	+				+1.4
3,765,326	+				+0.3
3,765,326	+				-1.2
3,765,327	-				-0.8
3,765,327	-				+1.4
3,765,327	-				+0.2
3,765,333	+				-1.1
3,765,333	+				+0.1
3,765,334	-				+0.1
3,765,359	+				-0.8
3,765,360	-				-0.5
3,765,408	-		PFR28_03255	0.11	-0.3
3,765,436	-		PFR28_03255	0.15	-1.4
3,765,436	-		PFR28_03255	0.15	-0.0
3,765,473	+		PFR28_03255	0.19	-1.9
3,765,473	+		PFR28_03255	0.19	+1.2
3,765,473	+		PFR28_03255	0.19	-0.1
3,765,473	+		PFR28_03255	0.19	-1.2
3,765,473	+		PFR28_03255	0.19	-0.0
3,765,473	+		PFR28_03255	0.19	+0.2
3,765,474	-		PFR28_03255	0.19	-1.1
3,765,474	-		PFR28_03255	0.19	-0.6
3,765,474	-		PFR28_03255	0.19	-1.4
3,765,474	-		PFR28_03255	0.19	-0.1
3,765,474	-		PFR28_03255	0.19	+0.5
3,765,474	-		PFR28_03255	0.19	-1.2
3,765,474	-		PFR28_03255	0.19	-0.8
3,765,474	-		PFR28_03255	0.19	-1.8
3,765,474	-		PFR28_03255	0.19	+0.0
3,765,474	-		PFR28_03255	0.19	+0.8
3,765,474	-		PFR28_03255	0.19	-0.3
3,765,474	-		PFR28_03255	0.19	-0.1
3,765,524	+		PFR28_03255	0.25	-0.6
3,765,524	+		PFR28_03255	0.25	-1.2
3,765,524	+		PFR28_03255	0.25	-0.7
3,765,524	+		PFR28_03255	0.25	-0.8
3,765,524	+		PFR28_03255	0.25	-2.2
3,765,524	+		PFR28_03255	0.25	-1.7
3,765,524	+		PFR28_03255	0.25	+0.8
3,765,524	+		PFR28_03255	0.25	-0.8
3,765,524	+		PFR28_03255	0.25	-1.4
3,765,524	+		PFR28_03255	0.25	-0.2
3,765,524	+		PFR28_03255	0.25	-0.9
3,765,524	+		PFR28_03255	0.25	+1.0
3,765,524	+		PFR28_03255	0.25	-0.3
3,765,524	+		PFR28_03255	0.25	-0.3
3,765,524	+		PFR28_03255	0.25	+0.7
3,765,525	-		PFR28_03255	0.26	-0.4
3,765,525	-		PFR28_03255	0.26	-1.8
3,765,525	-		PFR28_03255	0.26	+0.1
3,765,525	-		PFR28_03255	0.26	+0.1
3,765,525	-		PFR28_03255	0.26	-1.0
3,765,525	-		PFR28_03255	0.26	-0.5
3,765,525	-		PFR28_03255	0.26	+1.9
3,765,525	-		PFR28_03255	0.26	-0.4
3,765,525	-		PFR28_03255	0.26	-1.0
3,765,525	-		PFR28_03255	0.26	-0.0
3,765,525	-		PFR28_03255	0.26	-1.7
3,765,525	-		PFR28_03255	0.26	-0.9
3,765,615	-		PFR28_03255	0.36	+0.2
3,765,615	-		PFR28_03255	0.36	-2.1
3,765,666	-		PFR28_03255	0.43	-0.2
3,765,666	-		PFR28_03255	0.43	-0.8
3,765,896	+		PFR28_03255	0.70	-2.0
3,765,896	+		PFR28_03255	0.70	-0.0
3,765,896	+		PFR28_03255	0.70	+0.2
3,765,896	+		PFR28_03255	0.70	-0.2
3,765,896	+		PFR28_03255	0.70	-2.2
3,765,897	-		PFR28_03255	0.71	+0.2
3,765,897	-		PFR28_03255	0.71	-0.4
3,765,897	-		PFR28_03255	0.71	-1.4
3,765,900	+		PFR28_03255	0.71	-0.5
3,765,900	+		PFR28_03255	0.71	-2.0
3,765,900	+		PFR28_03255	0.71	-0.7
3,765,901	-		PFR28_03255	0.71	-0.8
3,765,981	+		PFR28_03255	0.81	-0.3
3,765,982	-		PFR28_03255	0.81	-0.5
3,765,982	-		PFR28_03255	0.81	+0.8