Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01746 and PFR28_01747 are separated by 8 nucleotides PFR28_01747 and PFR28_01748 overlap by 4 nucleotides PFR28_01748 and PFR28_01749 overlap by 8 nucleotides PFR28_01749 and PFR28_01750 overlap by 4 nucleotides
PFR28_01746: PFR28_01746 - Type II secretion system protein G, at 1,949,512 to 1,949,961
_01746
PFR28_01747: PFR28_01747 - Type II secretion system protein K, at 1,949,970 to 1,950,956
_01747
PFR28_01748: PFR28_01748 - hypothetical protein, at 1,950,953 to 1,952,134
_01748
PFR28_01749: PFR28_01749 - hypothetical protein, at 1,952,127 to 1,952,687
_01749
PFR28_01750: PFR28_01750 - Secretin XcpQ, at 1,952,684 to 1,955,044
_01750
Position (kb) 1950
1951
1952
1953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1949.959 kb on + strand at 1949.959 kb on + strand at 1950.115 kb on + strand, within PFR28_01747 at 1950.115 kb on + strand, within PFR28_01747 at 1950.115 kb on + strand, within PFR28_01747 at 1950.116 kb on - strand, within PFR28_01747 at 1950.116 kb on - strand, within PFR28_01747 at 1950.116 kb on - strand, within PFR28_01747 at 1950.116 kb on - strand, within PFR28_01747 at 1950.116 kb on - strand, within PFR28_01747 at 1950.119 kb on + strand, within PFR28_01747 at 1950.120 kb on - strand, within PFR28_01747 at 1950.349 kb on + strand, within PFR28_01747 at 1950.349 kb on + strand, within PFR28_01747 at 1950.349 kb on + strand, within PFR28_01747 at 1950.350 kb on - strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.690 kb on + strand, within PFR28_01747 at 1950.691 kb on - strand, within PFR28_01747 at 1950.691 kb on - strand, within PFR28_01747 at 1950.691 kb on - strand, within PFR28_01747 at 1950.952 kb on + strand at 1950.952 kb on + strand at 1950.952 kb on + strand at 1950.952 kb on + strand at 1950.953 kb on - strand at 1950.953 kb on - strand at 1950.953 kb on - strand at 1950.953 kb on - strand at 1950.953 kb on - strand at 1951.368 kb on - strand, within PFR28_01748 at 1951.452 kb on + strand, within PFR28_01748 at 1951.452 kb on + strand, within PFR28_01748 at 1951.953 kb on + strand, within PFR28_01748 at 1951.953 kb on + strand, within PFR28_01748 at 1951.954 kb on - strand, within PFR28_01748 at 1951.954 kb on - strand, within PFR28_01748 at 1952.425 kb on + strand, within PFR28_01749 at 1952.426 kb on - strand, within PFR28_01749 at 1952.452 kb on - strand, within PFR28_01749 at 1953.122 kb on + strand, within PFR28_01750 at 1953.122 kb on + strand, within PFR28_01750 at 1953.123 kb on - strand, within PFR28_01750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 1,949,959 + -0.6 1,949,959 + -0.7 1,950,115 + PFR28_01747 0.15 +0.6 1,950,115 + PFR28_01747 0.15 -2.3 1,950,115 + PFR28_01747 0.15 -0.9 1,950,116 - PFR28_01747 0.15 -1.5 1,950,116 - PFR28_01747 0.15 -0.0 1,950,116 - PFR28_01747 0.15 -0.0 1,950,116 - PFR28_01747 0.15 +1.1 1,950,116 - PFR28_01747 0.15 +0.2 1,950,119 + PFR28_01747 0.15 +0.8 1,950,120 - PFR28_01747 0.15 -0.3 1,950,349 + PFR28_01747 0.38 +2.1 1,950,349 + PFR28_01747 0.38 +0.6 1,950,349 + PFR28_01747 0.38 -0.2 1,950,350 - PFR28_01747 0.39 +1.4 1,950,690 + PFR28_01747 0.73 -1.0 1,950,690 + PFR28_01747 0.73 +1.0 1,950,690 + PFR28_01747 0.73 +0.3 1,950,690 + PFR28_01747 0.73 -0.4 1,950,690 + PFR28_01747 0.73 +1.0 1,950,690 + PFR28_01747 0.73 +0.4 1,950,691 - PFR28_01747 0.73 +0.5 1,950,691 - PFR28_01747 0.73 -0.1 1,950,691 - PFR28_01747 0.73 -0.7 1,950,952 + -0.7 1,950,952 + +1.1 1,950,952 + +0.4 1,950,952 + -2.1 1,950,953 - +0.9 1,950,953 - -0.4 1,950,953 - -0.6 1,950,953 - +0.0 1,950,953 - -0.1 1,951,368 - PFR28_01748 0.35 +1.6 1,951,452 + PFR28_01748 0.42 +1.9 1,951,452 + PFR28_01748 0.42 -0.7 1,951,953 + PFR28_01748 0.85 +1.1 1,951,953 + PFR28_01748 0.85 +0.1 1,951,954 - PFR28_01748 0.85 -1.9 1,951,954 - PFR28_01748 0.85 -0.4 1,952,425 + PFR28_01749 0.53 +0.3 1,952,426 - PFR28_01749 0.53 -0.2 1,952,452 - PFR28_01749 0.58 -0.3 1,953,122 + PFR28_01750 0.19 -1.4 1,953,122 + PFR28_01750 0.19 +0.0 1,953,123 - PFR28_01750 0.19 +0.9
Or see this region's nucleotide sequence