Strain Fitness in Pseudomonas sp. RS175 around PFR28_01587

Experiment: L-Carnitine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01584 and PFR28_01585 are separated by 155 nucleotidesPFR28_01585 and PFR28_01586 are separated by 161 nucleotidesPFR28_01586 and PFR28_01587 are separated by 12 nucleotidesPFR28_01587 and PFR28_01588 overlap by 4 nucleotides PFR28_01584: PFR28_01584 - 6-phosphogluconolactonase, at 1,753,423 to 1,754,598 _01584 PFR28_01585: PFR28_01585 - hypothetical protein, at 1,754,754 to 1,754,933 _01585 PFR28_01586: PFR28_01586 - hypothetical protein, at 1,755,095 to 1,755,220 _01586 PFR28_01587: PFR28_01587 - hypothetical protein, at 1,755,233 to 1,755,835 _01587 PFR28_01588: PFR28_01588 - hypothetical protein, at 1,755,832 to 1,759,473 _01588 Position (kb) 1755 1756Strain fitness (log2 ratio) -2 -1 0 1at 1754.323 kb on + strand, within PFR28_01584at 1754.323 kb on + strand, within PFR28_01584at 1754.323 kb on + strand, within PFR28_01584at 1754.323 kb on + strand, within PFR28_01584at 1754.324 kb on - strand, within PFR28_01584at 1754.324 kb on - strand, within PFR28_01584at 1754.458 kb on - strand, within PFR28_01584at 1754.596 kb on + strandat 1754.597 kb on - strandat 1754.634 kb on + strandat 1754.635 kb on - strandat 1754.696 kb on + strandat 1754.697 kb on - strandat 1754.865 kb on + strand, within PFR28_01585at 1754.865 kb on + strand, within PFR28_01585at 1754.865 kb on + strand, within PFR28_01585at 1754.865 kb on + strand, within PFR28_01585at 1754.865 kb on + strand, within PFR28_01585at 1754.865 kb on + strand, within PFR28_01585at 1754.866 kb on - strand, within PFR28_01585at 1754.866 kb on - strand, within PFR28_01585at 1754.866 kb on - strand, within PFR28_01585at 1754.866 kb on - strand, within PFR28_01585at 1754.877 kb on + strand, within PFR28_01585at 1754.877 kb on + strand, within PFR28_01585at 1754.877 kb on + strand, within PFR28_01585at 1754.878 kb on - strand, within PFR28_01585at 1754.901 kb on + strand, within PFR28_01585at 1755.114 kb on + strand, within PFR28_01586at 1755.115 kb on - strand, within PFR28_01586at 1755.132 kb on - strand, within PFR28_01586at 1755.199 kb on - strand, within PFR28_01586at 1755.199 kb on - strand, within PFR28_01586at 1755.234 kb on + strandat 1755.235 kb on - strandat 1755.463 kb on - strand, within PFR28_01587at 1755.465 kb on + strand, within PFR28_01587at 1755.466 kb on - strand, within PFR28_01587at 1755.817 kb on - strandat 1755.817 kb on - strandat 1755.817 kb on - strandat 1755.839 kb on - strandat 1755.853 kb on + strandat 1755.853 kb on + strandat 1755.853 kb on + strandat 1755.853 kb on + strandat 1755.854 kb on - strandat 1755.854 kb on - strandat 1756.257 kb on - strand, within PFR28_01588at 1756.340 kb on + strand, within PFR28_01588at 1756.340 kb on + strand, within PFR28_01588at 1756.341 kb on - strand, within PFR28_01588at 1756.341 kb on - strand, within PFR28_01588at 1756.415 kb on - strand, within PFR28_01588at 1756.821 kb on + strand, within PFR28_01588at 1756.822 kb on - strand, within PFR28_01588

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
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1,754,323 + PFR28_01584 0.77 +1.0
1,754,323 + PFR28_01584 0.77 -0.7
1,754,323 + PFR28_01584 0.77 +0.5
1,754,323 + PFR28_01584 0.77 -0.4
1,754,324 - PFR28_01584 0.77 +1.0
1,754,324 - PFR28_01584 0.77 -0.4
1,754,458 - PFR28_01584 0.88 +0.8
1,754,596 + -0.4
1,754,597 - -2.0
1,754,634 + -0.2
1,754,635 - +0.6
1,754,696 + -1.2
1,754,697 - -0.7
1,754,865 + PFR28_01585 0.62 +0.2
1,754,865 + PFR28_01585 0.62 -0.4
1,754,865 + PFR28_01585 0.62 +0.4
1,754,865 + PFR28_01585 0.62 -0.1
1,754,865 + PFR28_01585 0.62 -0.2
1,754,865 + PFR28_01585 0.62 -0.2
1,754,866 - PFR28_01585 0.62 -0.5
1,754,866 - PFR28_01585 0.62 -1.4
1,754,866 - PFR28_01585 0.62 +0.4
1,754,866 - PFR28_01585 0.62 +1.6
1,754,877 + PFR28_01585 0.68 +0.8
1,754,877 + PFR28_01585 0.68 +0.5
1,754,877 + PFR28_01585 0.68 +0.3
1,754,878 - PFR28_01585 0.69 +0.3
1,754,901 + PFR28_01585 0.82 +1.7
1,755,114 + PFR28_01586 0.15 -0.3
1,755,115 - PFR28_01586 0.16 +0.1
1,755,132 - PFR28_01586 0.29 -0.7
1,755,199 - PFR28_01586 0.83 +0.5
1,755,199 - PFR28_01586 0.83 +0.9
1,755,234 + -0.0
1,755,235 - +1.3
1,755,463 - PFR28_01587 0.38 +0.6
1,755,465 + PFR28_01587 0.38 +1.0
1,755,466 - PFR28_01587 0.39 -0.6
1,755,817 - -0.6
1,755,817 - +0.5
1,755,817 - -0.2
1,755,839 - -1.1
1,755,853 + -0.2
1,755,853 + +1.0
1,755,853 + +0.2
1,755,853 + +0.1
1,755,854 - -0.6
1,755,854 - +0.3
1,756,257 - PFR28_01588 0.12 +0.0
1,756,340 + PFR28_01588 0.14 +0.2
1,756,340 + PFR28_01588 0.14 +0.1
1,756,341 - PFR28_01588 0.14 -0.7
1,756,341 - PFR28_01588 0.14 -0.2
1,756,415 - PFR28_01588 0.16 +1.1
1,756,821 + PFR28_01588 0.27 +0.4
1,756,822 - PFR28_01588 0.27 -2.0

Or see this region's nucleotide sequence