Strain Fitness in Pseudomonas sp. RS175 around PFR28_01162

Experiment: L-Carnitine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01161 and PFR28_01162 overlap by 4 nucleotidesPFR28_01162 and PFR28_01163 are separated by 5 nucleotides PFR28_01161: PFR28_01161 - hypothetical protein, at 1,277,149 to 1,278,423 _01161 PFR28_01162: PFR28_01162 - hypothetical protein, at 1,278,420 to 1,278,860 _01162 PFR28_01163: PFR28_01163 - hypothetical protein, at 1,278,866 to 1,281,811 _01163 Position (kb) 1278 1279Strain fitness (log2 ratio) -2 -1 0 1 2at 1277.489 kb on + strand, within PFR28_01161at 1277.489 kb on + strand, within PFR28_01161at 1277.489 kb on + strand, within PFR28_01161at 1277.506 kb on - strand, within PFR28_01161at 1277.506 kb on - strand, within PFR28_01161at 1277.532 kb on + strand, within PFR28_01161at 1277.532 kb on + strand, within PFR28_01161at 1277.534 kb on + strand, within PFR28_01161at 1277.534 kb on + strand, within PFR28_01161at 1277.534 kb on + strand, within PFR28_01161at 1277.534 kb on + strand, within PFR28_01161at 1277.535 kb on - strand, within PFR28_01161at 1277.535 kb on - strand, within PFR28_01161at 1277.535 kb on - strand, within PFR28_01161at 1277.694 kb on - strand, within PFR28_01161at 1277.711 kb on + strand, within PFR28_01161at 1277.711 kb on + strand, within PFR28_01161at 1277.711 kb on + strand, within PFR28_01161at 1277.711 kb on + strand, within PFR28_01161at 1277.712 kb on - strand, within PFR28_01161at 1277.712 kb on - strand, within PFR28_01161at 1277.736 kb on - strand, within PFR28_01161at 1277.736 kb on - strand, within PFR28_01161at 1277.772 kb on + strand, within PFR28_01161at 1277.772 kb on + strand, within PFR28_01161at 1277.773 kb on - strand, within PFR28_01161at 1278.040 kb on + strand, within PFR28_01161at 1278.074 kb on - strand, within PFR28_01161at 1278.074 kb on - strand, within PFR28_01161at 1278.115 kb on + strand, within PFR28_01161at 1278.115 kb on + strand, within PFR28_01161at 1278.115 kb on + strand, within PFR28_01161at 1278.116 kb on - strand, within PFR28_01161at 1278.116 kb on - strand, within PFR28_01161at 1278.116 kb on - strand, within PFR28_01161at 1278.122 kb on + strand, within PFR28_01161at 1278.122 kb on + strand, within PFR28_01161at 1278.122 kb on + strand, within PFR28_01161at 1278.122 kb on + strand, within PFR28_01161at 1278.327 kb on + strandat 1278.500 kb on + strand, within PFR28_01162at 1278.592 kb on + strand, within PFR28_01162at 1278.593 kb on - strand, within PFR28_01162at 1278.811 kb on + strand, within PFR28_01162at 1278.811 kb on + strand, within PFR28_01162at 1278.812 kb on - strand, within PFR28_01162at 1278.996 kb on + strandat 1278.997 kb on - strandat 1279.001 kb on - strandat 1279.422 kb on - strand, within PFR28_01163at 1279.422 kb on - strand, within PFR28_01163at 1279.427 kb on + strand, within PFR28_01163at 1279.428 kb on - strand, within PFR28_01163at 1279.444 kb on + strand, within PFR28_01163at 1279.445 kb on - strand, within PFR28_01163at 1279.445 kb on - strand, within PFR28_01163at 1279.517 kb on + strand, within PFR28_01163at 1279.517 kb on + strand, within PFR28_01163at 1279.518 kb on - strand, within PFR28_01163at 1279.518 kb on - strand, within PFR28_01163at 1279.518 kb on - strand, within PFR28_01163at 1279.518 kb on - strand, within PFR28_01163at 1279.560 kb on - strand, within PFR28_01163at 1279.752 kb on + strand, within PFR28_01163at 1279.752 kb on + strand, within PFR28_01163at 1279.752 kb on + strand, within PFR28_01163at 1279.753 kb on - strand, within PFR28_01163at 1279.759 kb on - strand, within PFR28_01163at 1279.811 kb on + strand, within PFR28_01163at 1279.811 kb on + strand, within PFR28_01163at 1279.812 kb on - strand, within PFR28_01163

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
remove
1,277,489 + PFR28_01161 0.27 +0.1
1,277,489 + PFR28_01161 0.27 -1.2
1,277,489 + PFR28_01161 0.27 +1.0
1,277,506 - PFR28_01161 0.28 -0.6
1,277,506 - PFR28_01161 0.28 -1.2
1,277,532 + PFR28_01161 0.30 +0.2
1,277,532 + PFR28_01161 0.30 +1.2
1,277,534 + PFR28_01161 0.30 +1.2
1,277,534 + PFR28_01161 0.30 +0.0
1,277,534 + PFR28_01161 0.30 -0.9
1,277,534 + PFR28_01161 0.30 +0.9
1,277,535 - PFR28_01161 0.30 -0.5
1,277,535 - PFR28_01161 0.30 -0.6
1,277,535 - PFR28_01161 0.30 +1.2
1,277,694 - PFR28_01161 0.43 -1.9
1,277,711 + PFR28_01161 0.44 +0.0
1,277,711 + PFR28_01161 0.44 -0.6
1,277,711 + PFR28_01161 0.44 +0.2
1,277,711 + PFR28_01161 0.44 +0.1
1,277,712 - PFR28_01161 0.44 +0.2
1,277,712 - PFR28_01161 0.44 -0.6
1,277,736 - PFR28_01161 0.46 -0.6
1,277,736 - PFR28_01161 0.46 +1.0
1,277,772 + PFR28_01161 0.49 +0.6
1,277,772 + PFR28_01161 0.49 +0.6
1,277,773 - PFR28_01161 0.49 +0.1
1,278,040 + PFR28_01161 0.70 -1.2
1,278,074 - PFR28_01161 0.73 +0.5
1,278,074 - PFR28_01161 0.73 +0.8
1,278,115 + PFR28_01161 0.76 -0.5
1,278,115 + PFR28_01161 0.76 +0.8
1,278,115 + PFR28_01161 0.76 -0.2
1,278,116 - PFR28_01161 0.76 -0.7
1,278,116 - PFR28_01161 0.76 +0.6
1,278,116 - PFR28_01161 0.76 +0.0
1,278,122 + PFR28_01161 0.76 +0.4
1,278,122 + PFR28_01161 0.76 -0.6
1,278,122 + PFR28_01161 0.76 +1.8
1,278,122 + PFR28_01161 0.76 +0.5
1,278,327 + -2.0
1,278,500 + PFR28_01162 0.18 +0.2
1,278,592 + PFR28_01162 0.39 +0.4
1,278,593 - PFR28_01162 0.39 +1.0
1,278,811 + PFR28_01162 0.89 +0.2
1,278,811 + PFR28_01162 0.89 +0.5
1,278,812 - PFR28_01162 0.89 +0.1
1,278,996 + +0.1
1,278,997 - -0.9
1,279,001 - +0.2
1,279,422 - PFR28_01163 0.19 +0.4
1,279,422 - PFR28_01163 0.19 -1.0
1,279,427 + PFR28_01163 0.19 +0.6
1,279,428 - PFR28_01163 0.19 +0.0
1,279,444 + PFR28_01163 0.20 -1.2
1,279,445 - PFR28_01163 0.20 -0.8
1,279,445 - PFR28_01163 0.20 +0.8
1,279,517 + PFR28_01163 0.22 +0.2
1,279,517 + PFR28_01163 0.22 +0.8
1,279,518 - PFR28_01163 0.22 -0.9
1,279,518 - PFR28_01163 0.22 +1.6
1,279,518 - PFR28_01163 0.22 +0.1
1,279,518 - PFR28_01163 0.22 +0.3
1,279,560 - PFR28_01163 0.24 -1.6
1,279,752 + PFR28_01163 0.30 +0.4
1,279,752 + PFR28_01163 0.30 +0.3
1,279,752 + PFR28_01163 0.30 +0.0
1,279,753 - PFR28_01163 0.30 -0.2
1,279,759 - PFR28_01163 0.30 -2.0
1,279,811 + PFR28_01163 0.32 -0.2
1,279,811 + PFR28_01163 0.32 -0.5
1,279,812 - PFR28_01163 0.32 +0.4

Or see this region's nucleotide sequence