Strain Fitness in Pseudomonas sp. RS175 around PFR28_01150

Experiment: L-Carnitine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01147 and PFR28_01148 are separated by 277 nucleotidesPFR28_01148 and PFR28_01149 are separated by 58 nucleotidesPFR28_01149 and PFR28_01150 overlap by 4 nucleotidesPFR28_01150 and PFR28_01151 are separated by 24 nucleotidesPFR28_01151 and PFR28_01152 are separated by 25 nucleotides PFR28_01147: PFR28_01147 - hypothetical protein, at 1,267,225 to 1,267,770 _01147 PFR28_01148: PFR28_01148 - hypothetical protein, at 1,268,048 to 1,268,311 _01148 PFR28_01149: PFR28_01149 - hypothetical protein, at 1,268,370 to 1,268,576 _01149 PFR28_01150: PFR28_01150 - hypothetical protein, at 1,268,573 to 1,268,920 _01150 PFR28_01151: PFR28_01151 - hypothetical protein, at 1,268,945 to 1,269,763 _01151 PFR28_01152: PFR28_01152 - hypothetical protein, at 1,269,789 to 1,272,518 _01152 Position (kb) 1268 1269Strain fitness (log2 ratio) -2 -1 0 1at 1267.612 kb on + strand, within PFR28_01147at 1267.612 kb on + strand, within PFR28_01147at 1267.613 kb on - strand, within PFR28_01147at 1267.627 kb on + strand, within PFR28_01147at 1267.721 kb on - strandat 1267.866 kb on + strandat 1267.866 kb on + strandat 1267.866 kb on + strandat 1267.866 kb on + strandat 1267.866 kb on + strandat 1267.931 kb on + strandat 1267.973 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.045 kb on + strandat 1268.049 kb on + strandat 1268.049 kb on + strandat 1268.049 kb on + strandat 1268.049 kb on + strandat 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.235 kb on + strand, within PFR28_01148at 1268.258 kb on + strand, within PFR28_01148at 1268.258 kb on + strand, within PFR28_01148at 1268.258 kb on + strand, within PFR28_01148at 1268.258 kb on + strand, within PFR28_01148at 1268.331 kb on + strandat 1268.625 kb on + strand, within PFR28_01150at 1268.625 kb on + strand, within PFR28_01150at 1268.625 kb on + strand, within PFR28_01150at 1268.625 kb on + strand, within PFR28_01150at 1268.745 kb on + strand, within PFR28_01150at 1268.914 kb on + strandat 1268.914 kb on + strandat 1268.914 kb on + strandat 1268.914 kb on + strandat 1268.949 kb on + strandat 1269.134 kb on + strand, within PFR28_01151at 1269.134 kb on + strand, within PFR28_01151at 1269.194 kb on + strand, within PFR28_01151at 1269.250 kb on + strand, within PFR28_01151at 1269.406 kb on + strand, within PFR28_01151at 1269.406 kb on + strand, within PFR28_01151at 1269.406 kb on + strand, within PFR28_01151at 1269.406 kb on + strand, within PFR28_01151at 1269.408 kb on + strand, within PFR28_01151at 1269.408 kb on + strand, within PFR28_01151at 1269.408 kb on + strand, within PFR28_01151at 1269.530 kb on + strand, within PFR28_01151at 1269.714 kb on + strandat 1269.714 kb on + strandat 1269.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
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1,267,612 + PFR28_01147 0.71 +0.6
1,267,612 + PFR28_01147 0.71 -0.6
1,267,613 - PFR28_01147 0.71 -0.1
1,267,627 + PFR28_01147 0.74 +0.4
1,267,721 - +1.0
1,267,866 + +0.4
1,267,866 + +1.3
1,267,866 + -0.3
1,267,866 + +1.5
1,267,866 + -0.8
1,267,931 + -2.5
1,267,973 + +0.6
1,268,045 + +0.3
1,268,045 + +0.5
1,268,045 + +0.4
1,268,045 + -2.3
1,268,045 + -0.6
1,268,045 + -0.5
1,268,045 + -0.3
1,268,045 + -0.0
1,268,045 + +0.4
1,268,045 + +0.8
1,268,049 + -1.9
1,268,049 + +0.3
1,268,049 + -0.4
1,268,049 + -1.4
1,268,235 + PFR28_01148 0.71 +0.8
1,268,235 + PFR28_01148 0.71 -0.8
1,268,235 + PFR28_01148 0.71 +0.0
1,268,235 + PFR28_01148 0.71 +0.6
1,268,235 + PFR28_01148 0.71 -0.4
1,268,235 + PFR28_01148 0.71 -0.3
1,268,235 + PFR28_01148 0.71 -0.5
1,268,235 + PFR28_01148 0.71 +0.3
1,268,235 + PFR28_01148 0.71 +0.2
1,268,235 + PFR28_01148 0.71 +0.1
1,268,235 + PFR28_01148 0.71 +0.6
1,268,258 + PFR28_01148 0.80 +1.4
1,268,258 + PFR28_01148 0.80 -0.6
1,268,258 + PFR28_01148 0.80 +0.4
1,268,258 + PFR28_01148 0.80 +0.1
1,268,331 + -2.0
1,268,625 + PFR28_01150 0.15 -0.3
1,268,625 + PFR28_01150 0.15 +1.1
1,268,625 + PFR28_01150 0.15 +1.0
1,268,625 + PFR28_01150 0.15 -1.2
1,268,745 + PFR28_01150 0.49 +0.6
1,268,914 + -0.5
1,268,914 + -1.7
1,268,914 + +0.1
1,268,914 + -0.3
1,268,949 + -0.7
1,269,134 + PFR28_01151 0.23 +0.4
1,269,134 + PFR28_01151 0.23 +0.6
1,269,194 + PFR28_01151 0.30 -1.9
1,269,250 + PFR28_01151 0.37 +0.3
1,269,406 + PFR28_01151 0.56 -0.8
1,269,406 + PFR28_01151 0.56 -1.7
1,269,406 + PFR28_01151 0.56 -0.4
1,269,406 + PFR28_01151 0.56 -0.2
1,269,408 + PFR28_01151 0.57 +0.1
1,269,408 + PFR28_01151 0.57 -0.6
1,269,408 + PFR28_01151 0.57 +0.1
1,269,530 + PFR28_01151 0.71 -0.1
1,269,714 + -0.1
1,269,714 + +0.8
1,269,715 - -0.7

Or see this region's nucleotide sequence