Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00850 and PFR28_00851 are separated by 114 nucleotides PFR28_00851 and PFR28_00852 overlap by 4 nucleotides PFR28_00852 and PFR28_00853 are separated by 166 nucleotides PFR28_00853 and PFR28_00854 are separated by 18 nucleotides
PFR28_00850: PFR28_00850 - Signal recognition particle 54 kDa protein, at 922,714 to 924,063
_00850
PFR28_00851: PFR28_00851 - Flagellum site-determining protein YlxH, at 924,178 to 925,008
_00851
PFR28_00852: PFR28_00852 - RNA polymerase sigma factor FliA, at 925,005 to 925,748
_00852
PFR28_00853: PFR28_00853 - Chemotaxis protein CheY, at 925,915 to 926,286
_00853
PFR28_00854: PFR28_00854 - Protein phosphatase CheZ, at 926,305 to 927,093
_00854
Position (kb) 925
926 Strain fitness (log2 ratio) -1
0
1
2 at 924.030 kb on + strand at 924.030 kb on + strand at 924.030 kb on + strand at 924.030 kb on + strand at 924.030 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.034 kb on + strand at 924.035 kb on - strand at 924.035 kb on - strand at 924.035 kb on - strand at 924.035 kb on - strand at 924.035 kb on - strand at 924.046 kb on - strand at 924.066 kb on + strand at 924.066 kb on + strand at 924.066 kb on + strand at 924.066 kb on + strand at 924.067 kb on - strand at 924.067 kb on - strand at 924.089 kb on + strand at 924.089 kb on + strand at 924.089 kb on + strand at 924.089 kb on + strand at 924.089 kb on + strand at 924.089 kb on + strand at 924.090 kb on - strand at 924.090 kb on - strand at 924.090 kb on - strand at 924.090 kb on - strand at 924.090 kb on - strand at 924.090 kb on - strand at 924.119 kb on + strand at 924.136 kb on + strand at 924.136 kb on + strand at 924.152 kb on + strand at 924.156 kb on + strand at 924.156 kb on + strand at 924.156 kb on + strand at 924.157 kb on - strand at 924.157 kb on - strand at 924.157 kb on - strand at 924.167 kb on - strand at 924.650 kb on - strand, within PFR28_00851 at 924.797 kb on - strand, within PFR28_00851 at 924.797 kb on - strand, within PFR28_00851 at 924.797 kb on - strand, within PFR28_00851 at 924.860 kb on - strand, within PFR28_00851 at 924.860 kb on - strand, within PFR28_00851 at 925.032 kb on + strand at 925.032 kb on + strand at 925.032 kb on + strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.060 kb on - strand at 925.060 kb on - strand at 925.104 kb on + strand, within PFR28_00852 at 925.105 kb on - strand, within PFR28_00852 at 925.105 kb on - strand, within PFR28_00852 at 925.105 kb on - strand, within PFR28_00852 at 925.105 kb on - strand, within PFR28_00852 at 925.194 kb on + strand, within PFR28_00852 at 925.194 kb on + strand, within PFR28_00852 at 925.194 kb on + strand, within PFR28_00852 at 925.195 kb on - strand, within PFR28_00852 at 925.195 kb on - strand, within PFR28_00852 at 925.195 kb on - strand, within PFR28_00852 at 925.195 kb on - strand, within PFR28_00852 at 925.227 kb on + strand, within PFR28_00852 at 925.227 kb on + strand, within PFR28_00852 at 925.227 kb on + strand, within PFR28_00852 at 925.227 kb on + strand, within PFR28_00852 at 925.228 kb on - strand, within PFR28_00852 at 925.228 kb on - strand, within PFR28_00852 at 925.228 kb on - strand, within PFR28_00852 at 925.298 kb on - strand, within PFR28_00852 at 925.304 kb on + strand, within PFR28_00852 at 925.304 kb on + strand, within PFR28_00852 at 925.304 kb on + strand, within PFR28_00852 at 925.304 kb on + strand, within PFR28_00852 at 925.305 kb on - strand, within PFR28_00852 at 925.305 kb on - strand, within PFR28_00852 at 925.305 kb on - strand, within PFR28_00852 at 925.305 kb on - strand, within PFR28_00852 at 925.305 kb on - strand, within PFR28_00852 at 925.307 kb on + strand, within PFR28_00852 at 925.347 kb on - strand, within PFR28_00852 at 925.364 kb on + strand, within PFR28_00852 at 925.411 kb on - strand, within PFR28_00852 at 925.411 kb on - strand, within PFR28_00852 at 925.411 kb on - strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.515 kb on + strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.516 kb on - strand, within PFR28_00852 at 925.517 kb on + strand, within PFR28_00852 at 925.517 kb on + strand, within PFR28_00852 at 925.517 kb on + strand, within PFR28_00852 at 925.617 kb on + strand, within PFR28_00852 at 925.617 kb on + strand, within PFR28_00852 at 925.617 kb on + strand, within PFR28_00852 at 925.618 kb on - strand, within PFR28_00852 at 925.618 kb on - strand, within PFR28_00852 at 925.618 kb on - strand, within PFR28_00852 at 925.620 kb on + strand, within PFR28_00852 at 925.620 kb on + strand, within PFR28_00852 at 925.621 kb on - strand, within PFR28_00852 at 925.621 kb on - strand, within PFR28_00852 at 925.621 kb on - strand, within PFR28_00852 at 925.690 kb on + strand at 925.690 kb on + strand at 925.690 kb on + strand at 925.690 kb on + strand at 925.690 kb on + strand at 925.691 kb on - strand at 925.808 kb on - strand at 925.882 kb on + strand at 925.882 kb on + strand at 925.883 kb on - strand at 925.883 kb on - strand at 925.883 kb on - strand at 925.962 kb on + strand, within PFR28_00853 at 925.962 kb on + strand, within PFR28_00853 at 925.963 kb on - strand, within PFR28_00853 at 925.963 kb on - strand, within PFR28_00853 at 925.963 kb on - strand, within PFR28_00853 at 925.963 kb on - strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.114 kb on + strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.115 kb on - strand, within PFR28_00853 at 926.215 kb on + strand, within PFR28_00853 at 926.215 kb on + strand, within PFR28_00853 at 926.216 kb on - strand, within PFR28_00853 at 926.216 kb on - strand, within PFR28_00853 at 926.216 kb on - strand, within PFR28_00853 at 926.251 kb on + strand at 926.304 kb on + strand at 926.304 kb on + strand at 926.304 kb on + strand at 926.304 kb on + strand at 926.305 kb on - strand at 926.305 kb on - strand at 926.305 kb on - strand at 926.305 kb on - strand at 926.305 kb on - strand at 926.305 kb on - strand at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.576 kb on - strand, within PFR28_00854 at 926.576 kb on - strand, within PFR28_00854
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 924,030 + -0.2 924,030 + +0.1 924,030 + -0.4 924,030 + -0.8 924,030 + +0.5 924,034 + +0.3 924,034 + -0.1 924,034 + -0.2 924,034 + -0.9 924,034 + -0.2 924,034 + -0.8 924,034 + +0.2 924,034 + -0.5 924,034 + +0.6 924,034 + -0.1 924,034 + -0.3 924,034 + -0.1 924,034 + -0.0 924,034 + +0.4 924,035 - +0.8 924,035 - +0.8 924,035 - +0.8 924,035 - -1.2 924,035 - +0.8 924,046 - +0.8 924,066 + -0.1 924,066 + -0.0 924,066 + +0.0 924,066 + +1.2 924,067 - +0.8 924,067 - +0.8 924,089 + +0.3 924,089 + -0.1 924,089 + +0.8 924,089 + +0.8 924,089 + +0.2 924,089 + -0.7 924,090 - +0.8 924,090 - +0.8 924,090 - +0.8 924,090 - +0.8 924,090 - +0.8 924,090 - -0.8 924,119 + -1.1 924,136 + +0.4 924,136 + +0.3 924,152 + +0.7 924,156 + -0.3 924,156 + -0.2 924,156 + +1.8 924,157 - +0.8 924,157 - +0.8 924,157 - +0.8 924,167 - +0.8 924,650 - PFR28_00851 0.57 +0.8 924,797 - PFR28_00851 0.74 +0.8 924,797 - PFR28_00851 0.74 -0.2 924,797 - PFR28_00851 0.74 -1.2 924,860 - PFR28_00851 0.82 +0.8 924,860 - PFR28_00851 0.82 +0.8 925,032 + +0.8 925,032 + +1.1 925,032 + +0.7 925,033 - -0.4 925,033 - +0.2 925,033 - +0.9 925,060 - +1.0 925,060 - +1.1 925,104 + PFR28_00852 0.13 +0.5 925,105 - PFR28_00852 0.13 +0.5 925,105 - PFR28_00852 0.13 +0.3 925,105 - PFR28_00852 0.13 +0.6 925,105 - PFR28_00852 0.13 +1.0 925,194 + PFR28_00852 0.25 +0.6 925,194 + PFR28_00852 0.25 +0.1 925,194 + PFR28_00852 0.25 +1.1 925,195 - PFR28_00852 0.26 +1.2 925,195 - PFR28_00852 0.26 +0.4 925,195 - PFR28_00852 0.26 +0.6 925,195 - PFR28_00852 0.26 +0.8 925,227 + PFR28_00852 0.30 +0.5 925,227 + PFR28_00852 0.30 +1.8 925,227 + PFR28_00852 0.30 +0.3 925,227 + PFR28_00852 0.30 +1.4 925,228 - PFR28_00852 0.30 +0.7 925,228 - PFR28_00852 0.30 -0.0 925,228 - PFR28_00852 0.30 +0.8 925,298 - PFR28_00852 0.39 +0.3 925,304 + PFR28_00852 0.40 +0.8 925,304 + PFR28_00852 0.40 +0.3 925,304 + PFR28_00852 0.40 +1.2 925,304 + PFR28_00852 0.40 +0.3 925,305 - PFR28_00852 0.40 +0.7 925,305 - PFR28_00852 0.40 +0.1 925,305 - PFR28_00852 0.40 +1.0 925,305 - PFR28_00852 0.40 +0.3 925,305 - PFR28_00852 0.40 +0.6 925,307 + PFR28_00852 0.41 +0.8 925,347 - PFR28_00852 0.46 +0.2 925,364 + PFR28_00852 0.48 +0.6 925,411 - PFR28_00852 0.55 +0.3 925,411 - PFR28_00852 0.55 +0.6 925,411 - PFR28_00852 0.55 +0.9 925,515 + PFR28_00852 0.69 +1.1 925,515 + PFR28_00852 0.69 -0.0 925,515 + PFR28_00852 0.69 +1.1 925,515 + PFR28_00852 0.69 +0.6 925,515 + PFR28_00852 0.69 +0.8 925,515 + PFR28_00852 0.69 +1.0 925,516 - PFR28_00852 0.69 -0.4 925,516 - PFR28_00852 0.69 +0.3 925,516 - PFR28_00852 0.69 +0.6 925,516 - PFR28_00852 0.69 +0.7 925,516 - PFR28_00852 0.69 -0.2 925,516 - PFR28_00852 0.69 +0.5 925,516 - PFR28_00852 0.69 +0.7 925,516 - PFR28_00852 0.69 +0.5 925,516 - PFR28_00852 0.69 +1.0 925,516 - PFR28_00852 0.69 +0.3 925,516 - PFR28_00852 0.69 +0.0 925,517 + PFR28_00852 0.69 +1.1 925,517 + PFR28_00852 0.69 +0.0 925,517 + PFR28_00852 0.69 +0.9 925,617 + PFR28_00852 0.82 +0.5 925,617 + PFR28_00852 0.82 +1.0 925,617 + PFR28_00852 0.82 +0.9 925,618 - PFR28_00852 0.82 +0.6 925,618 - PFR28_00852 0.82 -1.4 925,618 - PFR28_00852 0.82 +0.6 925,620 + PFR28_00852 0.83 +1.2 925,620 + PFR28_00852 0.83 +0.3 925,621 - PFR28_00852 0.83 +0.2 925,621 - PFR28_00852 0.83 +0.6 925,621 - PFR28_00852 0.83 +0.6 925,690 + -0.2 925,690 + +1.5 925,690 + -0.2 925,690 + +0.6 925,690 + +0.3 925,691 - +1.9 925,808 - -0.0 925,882 + -0.5 925,882 + -1.5 925,883 - -1.0 925,883 - -1.1 925,883 - +0.5 925,962 + PFR28_00853 0.13 -0.6 925,962 + PFR28_00853 0.13 +0.1 925,963 - PFR28_00853 0.13 -1.5 925,963 - PFR28_00853 0.13 -0.8 925,963 - PFR28_00853 0.13 -0.3 925,963 - PFR28_00853 0.13 -1.2 926,114 + PFR28_00853 0.53 -0.0 926,114 + PFR28_00853 0.53 -0.8 926,114 + PFR28_00853 0.53 -0.6 926,114 + PFR28_00853 0.53 +0.0 926,114 + PFR28_00853 0.53 -0.3 926,114 + PFR28_00853 0.53 -1.3 926,115 - PFR28_00853 0.54 +1.3 926,115 - PFR28_00853 0.54 -1.3 926,115 - PFR28_00853 0.54 +0.2 926,115 - PFR28_00853 0.54 -0.1 926,115 - PFR28_00853 0.54 +0.9 926,115 - PFR28_00853 0.54 -0.9 926,115 - PFR28_00853 0.54 -0.3 926,115 - PFR28_00853 0.54 +0.5 926,115 - PFR28_00853 0.54 +1.6 926,115 - PFR28_00853 0.54 +0.3 926,215 + PFR28_00853 0.81 +0.7 926,215 + PFR28_00853 0.81 +0.1 926,216 - PFR28_00853 0.81 -1.2 926,216 - PFR28_00853 0.81 -1.0 926,216 - PFR28_00853 0.81 -1.2 926,251 + -0.7 926,304 + +0.1 926,304 + -0.3 926,304 + +0.4 926,304 + -0.3 926,305 - -1.6 926,305 - -0.2 926,305 - +0.2 926,305 - +0.4 926,305 - +0.1 926,305 - -0.4 926,452 + PFR28_00854 0.19 +0.1 926,452 + PFR28_00854 0.19 +0.1 926,452 + PFR28_00854 0.19 -0.9 926,452 + PFR28_00854 0.19 +0.2 926,452 + PFR28_00854 0.19 -0.7 926,575 + PFR28_00854 0.34 -0.1 926,575 + PFR28_00854 0.34 -1.6 926,575 + PFR28_00854 0.34 +0.3 926,575 + PFR28_00854 0.34 -1.1 926,575 + PFR28_00854 0.34 +1.3 926,576 - PFR28_00854 0.34 -0.7 926,576 - PFR28_00854 0.34 +0.5
Or see this region's nucleotide sequence