Strain Fitness in Pseudomonas sp. RS175 around PFR28_00849

Experiment: L-Carnitine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00848 and PFR28_00849 are separated by 230 nucleotidesPFR28_00849 and PFR28_00850 are separated by 11 nucleotides PFR28_00848: PFR28_00848 - Flagellar biosynthetic protein FlhB, at 919,206 to 920,342 _00848 PFR28_00849: PFR28_00849 - Flagellar biosynthesis protein FlhA, at 920,573 to 922,702 _00849 PFR28_00850: PFR28_00850 - Signal recognition particle 54 kDa protein, at 922,714 to 924,063 _00850 Position (kb) 920 921 922 923Strain fitness (log2 ratio) -1 0 1 2 3 4at 919.697 kb on - strand, within PFR28_00848at 919.758 kb on - strand, within PFR28_00848at 919.764 kb on - strand, within PFR28_00848at 919.848 kb on + strand, within PFR28_00848at 919.848 kb on + strand, within PFR28_00848at 919.848 kb on + strand, within PFR28_00848at 919.849 kb on - strand, within PFR28_00848at 919.849 kb on - strand, within PFR28_00848at 919.849 kb on - strand, within PFR28_00848at 919.899 kb on + strand, within PFR28_00848at 919.900 kb on - strand, within PFR28_00848at 919.900 kb on - strand, within PFR28_00848at 919.900 kb on - strand, within PFR28_00848at 919.960 kb on + strand, within PFR28_00848at 919.960 kb on + strand, within PFR28_00848at 919.961 kb on - strand, within PFR28_00848at 920.009 kb on + strand, within PFR28_00848at 920.010 kb on - strand, within PFR28_00848at 920.010 kb on - strand, within PFR28_00848at 920.010 kb on - strand, within PFR28_00848at 920.025 kb on + strand, within PFR28_00848at 920.025 kb on + strand, within PFR28_00848at 920.026 kb on - strand, within PFR28_00848at 920.044 kb on - strand, within PFR28_00848at 920.175 kb on + strand, within PFR28_00848at 920.175 kb on + strand, within PFR28_00848at 920.176 kb on - strand, within PFR28_00848at 920.176 kb on - strand, within PFR28_00848at 920.176 kb on - strand, within PFR28_00848at 920.176 kb on - strand, within PFR28_00848at 920.178 kb on + strand, within PFR28_00848at 920.178 kb on + strand, within PFR28_00848at 920.179 kb on - strand, within PFR28_00848at 920.179 kb on - strand, within PFR28_00848at 920.217 kb on + strand, within PFR28_00848at 920.218 kb on - strand, within PFR28_00848at 920.218 kb on - strand, within PFR28_00848at 920.218 kb on - strand, within PFR28_00848at 920.244 kb on + strandat 920.244 kb on + strandat 920.244 kb on + strandat 920.244 kb on + strandat 920.244 kb on + strandat 920.245 kb on - strandat 920.245 kb on - strandat 920.245 kb on - strandat 920.250 kb on + strandat 920.250 kb on + strandat 920.250 kb on + strandat 920.251 kb on - strandat 920.251 kb on - strandat 920.589 kb on + strandat 920.589 kb on + strandat 920.589 kb on + strandat 920.590 kb on - strandat 920.616 kb on + strandat 920.746 kb on - strandat 920.762 kb on + strandat 920.762 kb on + strandat 920.762 kb on + strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.763 kb on - strandat 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.939 kb on + strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 920.940 kb on - strand, within PFR28_00849at 921.037 kb on + strand, within PFR28_00849at 921.038 kb on - strand, within PFR28_00849at 921.155 kb on + strand, within PFR28_00849at 921.155 kb on + strand, within PFR28_00849at 921.156 kb on - strand, within PFR28_00849at 921.156 kb on - strand, within PFR28_00849at 921.253 kb on + strand, within PFR28_00849at 921.254 kb on - strand, within PFR28_00849at 921.254 kb on - strand, within PFR28_00849at 921.296 kb on + strand, within PFR28_00849at 921.296 kb on + strand, within PFR28_00849at 921.296 kb on + strand, within PFR28_00849at 921.296 kb on + strand, within PFR28_00849at 921.296 kb on + strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.297 kb on - strand, within PFR28_00849at 921.545 kb on + strand, within PFR28_00849at 921.546 kb on - strand, within PFR28_00849at 921.546 kb on - strand, within PFR28_00849at 921.817 kb on + strand, within PFR28_00849at 921.818 kb on - strand, within PFR28_00849at 921.896 kb on + strand, within PFR28_00849at 921.935 kb on + strand, within PFR28_00849at 921.935 kb on + strand, within PFR28_00849at 921.935 kb on + strand, within PFR28_00849at 921.936 kb on - strand, within PFR28_00849at 921.936 kb on - strand, within PFR28_00849at 921.936 kb on - strand, within PFR28_00849at 921.936 kb on - strand, within PFR28_00849at 922.034 kb on + strand, within PFR28_00849at 922.034 kb on + strand, within PFR28_00849at 922.035 kb on - strand, within PFR28_00849at 922.088 kb on + strand, within PFR28_00849at 922.089 kb on - strand, within PFR28_00849at 922.089 kb on - strand, within PFR28_00849at 922.143 kb on + strand, within PFR28_00849at 922.144 kb on - strand, within PFR28_00849at 922.144 kb on - strand, within PFR28_00849at 922.144 kb on - strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.371 kb on + strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.372 kb on - strand, within PFR28_00849at 922.375 kb on + strand, within PFR28_00849at 922.376 kb on - strand, within PFR28_00849at 922.376 kb on - strand, within PFR28_00849at 922.376 kb on - strand, within PFR28_00849at 922.376 kb on - strand, within PFR28_00849at 922.425 kb on + strand, within PFR28_00849at 922.425 kb on + strand, within PFR28_00849at 922.425 kb on + strand, within PFR28_00849at 922.641 kb on - strandat 922.650 kb on + strandat 922.686 kb on + strandat 922.686 kb on + strandat 922.687 kb on - strandat 922.705 kb on + strandat 922.706 kb on - strandat 922.706 kb on - strandat 922.713 kb on + strandat 922.714 kb on - strandat 922.714 kb on - strandat 922.714 kb on - strandat 922.850 kb on - strand, within PFR28_00850at 922.850 kb on - strand, within PFR28_00850at 923.470 kb on + strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
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919,697 - PFR28_00848 0.43 +0.9
919,758 - PFR28_00848 0.49 +0.7
919,764 - PFR28_00848 0.49 +3.8
919,848 + PFR28_00848 0.56 +0.3
919,848 + PFR28_00848 0.56 +0.1
919,848 + PFR28_00848 0.56 +0.4
919,849 - PFR28_00848 0.57 +0.8
919,849 - PFR28_00848 0.57 +1.4
919,849 - PFR28_00848 0.57 +1.0
919,899 + PFR28_00848 0.61 +0.9
919,900 - PFR28_00848 0.61 +0.7
919,900 - PFR28_00848 0.61 +0.9
919,900 - PFR28_00848 0.61 +1.4
919,960 + PFR28_00848 0.66 +0.4
919,960 + PFR28_00848 0.66 +0.1
919,961 - PFR28_00848 0.66 +1.4
920,009 + PFR28_00848 0.71 +1.1
920,010 - PFR28_00848 0.71 +0.7
920,010 - PFR28_00848 0.71 +0.7
920,010 - PFR28_00848 0.71 +0.8
920,025 + PFR28_00848 0.72 +1.0
920,025 + PFR28_00848 0.72 -0.3
920,026 - PFR28_00848 0.72 +1.6
920,044 - PFR28_00848 0.74 +0.8
920,175 + PFR28_00848 0.85 +0.3
920,175 + PFR28_00848 0.85 +0.8
920,176 - PFR28_00848 0.85 +0.5
920,176 - PFR28_00848 0.85 +0.8
920,176 - PFR28_00848 0.85 -1.0
920,176 - PFR28_00848 0.85 -0.1
920,178 + PFR28_00848 0.85 +0.8
920,178 + PFR28_00848 0.85 +0.4
920,179 - PFR28_00848 0.86 -0.3
920,179 - PFR28_00848 0.86 +0.8
920,217 + PFR28_00848 0.89 +1.1
920,218 - PFR28_00848 0.89 +0.5
920,218 - PFR28_00848 0.89 -1.5
920,218 - PFR28_00848 0.89 -0.5
920,244 + +2.6
920,244 + +1.3
920,244 + +0.6
920,244 + -0.2
920,244 + +0.8
920,245 - +0.4
920,245 - +0.9
920,245 - +0.4
920,250 + +0.9
920,250 + -0.1
920,250 + +2.8
920,251 - +0.5
920,251 - +0.7
920,589 + +0.2
920,589 + +0.5
920,589 + +0.7
920,590 - +0.6
920,616 + +0.8
920,746 - +0.1
920,762 + +0.6
920,762 + +0.5
920,762 + -0.1
920,763 - +0.4
920,763 - +0.6
920,763 - +0.2
920,763 - +0.4
920,763 - +0.6
920,763 - +0.4
920,763 - +0.5
920,763 - +0.7
920,939 + PFR28_00849 0.17 +0.8
920,939 + PFR28_00849 0.17 +0.1
920,939 + PFR28_00849 0.17 -0.2
920,939 + PFR28_00849 0.17 +0.7
920,939 + PFR28_00849 0.17 +0.6
920,939 + PFR28_00849 0.17 +0.7
920,939 + PFR28_00849 0.17 +0.1
920,939 + PFR28_00849 0.17 +1.0
920,939 + PFR28_00849 0.17 +0.1
920,939 + PFR28_00849 0.17 +0.0
920,939 + PFR28_00849 0.17 +1.0
920,939 + PFR28_00849 0.17 +0.8
920,940 - PFR28_00849 0.17 +0.6
920,940 - PFR28_00849 0.17 +0.7
920,940 - PFR28_00849 0.17 +1.2
920,940 - PFR28_00849 0.17 +0.6
920,940 - PFR28_00849 0.17 +1.0
920,940 - PFR28_00849 0.17 +1.0
920,940 - PFR28_00849 0.17 -0.6
920,940 - PFR28_00849 0.17 +0.3
920,940 - PFR28_00849 0.17 +2.1
920,940 - PFR28_00849 0.17 +1.1
920,940 - PFR28_00849 0.17 -0.4
920,940 - PFR28_00849 0.17 +0.8
920,940 - PFR28_00849 0.17 +0.2
920,940 - PFR28_00849 0.17 +1.1
921,037 + PFR28_00849 0.22 +2.0
921,038 - PFR28_00849 0.22 +0.2
921,155 + PFR28_00849 0.27 +0.4
921,155 + PFR28_00849 0.27 +0.2
921,156 - PFR28_00849 0.27 +1.1
921,156 - PFR28_00849 0.27 +0.7
921,253 + PFR28_00849 0.32 -0.0
921,254 - PFR28_00849 0.32 +0.5
921,254 - PFR28_00849 0.32 +0.0
921,296 + PFR28_00849 0.34 +0.5
921,296 + PFR28_00849 0.34 +1.2
921,296 + PFR28_00849 0.34 +0.5
921,296 + PFR28_00849 0.34 -0.2
921,296 + PFR28_00849 0.34 +0.0
921,297 - PFR28_00849 0.34 +0.3
921,297 - PFR28_00849 0.34 +0.5
921,297 - PFR28_00849 0.34 +0.4
921,297 - PFR28_00849 0.34 +0.5
921,297 - PFR28_00849 0.34 +0.6
921,297 - PFR28_00849 0.34 +1.0
921,297 - PFR28_00849 0.34 +0.9
921,297 - PFR28_00849 0.34 -0.1
921,545 + PFR28_00849 0.46 +2.2
921,546 - PFR28_00849 0.46 +0.4
921,546 - PFR28_00849 0.46 -0.4
921,817 + PFR28_00849 0.58 +0.2
921,818 - PFR28_00849 0.58 -0.3
921,896 + PFR28_00849 0.62 +0.0
921,935 + PFR28_00849 0.64 -0.0
921,935 + PFR28_00849 0.64 +0.3
921,935 + PFR28_00849 0.64 +0.5
921,936 - PFR28_00849 0.64 +0.2
921,936 - PFR28_00849 0.64 +1.0
921,936 - PFR28_00849 0.64 +0.5
921,936 - PFR28_00849 0.64 +0.2
922,034 + PFR28_00849 0.69 +1.1
922,034 + PFR28_00849 0.69 +0.9
922,035 - PFR28_00849 0.69 +0.6
922,088 + PFR28_00849 0.71 +0.5
922,089 - PFR28_00849 0.71 +0.4
922,089 - PFR28_00849 0.71 +1.0
922,143 + PFR28_00849 0.74 +0.2
922,144 - PFR28_00849 0.74 +1.3
922,144 - PFR28_00849 0.74 +0.8
922,144 - PFR28_00849 0.74 -0.9
922,371 + PFR28_00849 0.84 +1.2
922,371 + PFR28_00849 0.84 +0.7
922,371 + PFR28_00849 0.84 +0.9
922,371 + PFR28_00849 0.84 +0.7
922,371 + PFR28_00849 0.84 +0.5
922,371 + PFR28_00849 0.84 +1.3
922,371 + PFR28_00849 0.84 -0.0
922,371 + PFR28_00849 0.84 +1.0
922,372 - PFR28_00849 0.84 +1.0
922,372 - PFR28_00849 0.84 +0.4
922,372 - PFR28_00849 0.84 +1.7
922,372 - PFR28_00849 0.84 +2.0
922,372 - PFR28_00849 0.84 +0.2
922,372 - PFR28_00849 0.84 +1.8
922,372 - PFR28_00849 0.84 -1.5
922,372 - PFR28_00849 0.84 +0.4
922,372 - PFR28_00849 0.84 +1.4
922,372 - PFR28_00849 0.84 +0.8
922,372 - PFR28_00849 0.84 +1.6
922,372 - PFR28_00849 0.84 +0.6
922,375 + PFR28_00849 0.85 -0.2
922,376 - PFR28_00849 0.85 +0.8
922,376 - PFR28_00849 0.85 +2.2
922,376 - PFR28_00849 0.85 +1.8
922,376 - PFR28_00849 0.85 +1.1
922,425 + PFR28_00849 0.87 +0.3
922,425 + PFR28_00849 0.87 +0.5
922,425 + PFR28_00849 0.87 +0.3
922,641 - -0.5
922,650 + +0.9
922,686 + +0.5
922,686 + -1.3
922,687 - +1.8
922,705 + -0.3
922,706 - +0.8
922,706 - +0.8
922,713 + +0.4
922,714 - +0.8
922,714 - +0.8
922,714 - -0.8
922,850 - PFR28_00850 0.10 +0.8
922,850 - PFR28_00850 0.10 +0.8
923,470 + PFR28_00850 0.56 -0.8
923,471 - PFR28_00850 0.56 +0.8
923,471 - PFR28_00850 0.56 +0.8
923,471 - PFR28_00850 0.56 -0.2
923,482 + PFR28_00850 0.57 +0.2
923,482 + PFR28_00850 0.57 +0.6
923,482 + PFR28_00850 0.57 +0.3
923,482 + PFR28_00850 0.57 -0.3
923,482 + PFR28_00850 0.57 -0.3
923,482 + PFR28_00850 0.57 -0.5
923,482 + PFR28_00850 0.57 -0.1
923,483 - PFR28_00850 0.57 +0.8
923,483 - PFR28_00850 0.57 +0.8
923,483 - PFR28_00850 0.57 +0.8
923,483 - PFR28_00850 0.57 +0.8
923,483 - PFR28_00850 0.57 -1.2

Or see this region's nucleotide sequence