Strain Fitness in Pseudomonas sp. RS175 around PFR28_00832

Experiment: L-Carnitine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00830 and PFR28_00831 are separated by 230 nucleotidesPFR28_00831 and PFR28_00832 are separated by 16 nucleotidesPFR28_00832 and PFR28_00833 overlap by 8 nucleotides PFR28_00830: PFR28_00830 - Regulatory protein AtoC, at 903,268 to 904,662 _00830 PFR28_00831: PFR28_00831 - Flagellar hook-basal body complex protein FliE, at 904,893 to 905,219 _00831 PFR28_00832: PFR28_00832 - Flagellar M-ring protein, at 905,236 to 907,020 _00832 PFR28_00833: PFR28_00833 - Flagellar motor switch protein FliG, at 907,013 to 908,032 _00833 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -2 -1 0 1 2 3at 904.285 kb on + strand, within PFR28_00830at 904.600 kb on + strandat 904.601 kb on - strandat 904.601 kb on - strandat 904.601 kb on - strandat 904.637 kb on + strandat 904.637 kb on + strandat 904.637 kb on + strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.638 kb on - strandat 904.645 kb on + strandat 904.645 kb on + strandat 904.646 kb on - strandat 904.646 kb on - strandat 904.799 kb on + strandat 904.832 kb on - strandat 904.832 kb on - strandat 904.841 kb on - strandat 904.841 kb on - strandat 904.841 kb on - strandat 904.853 kb on + strandat 904.854 kb on - strandat 904.887 kb on + strandat 904.888 kb on - strandat 904.904 kb on + strandat 904.905 kb on - strandat 904.913 kb on + strandat 905.033 kb on + strand, within PFR28_00831at 905.060 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.116 kb on + strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.117 kb on - strand, within PFR28_00831at 905.190 kb on + strandat 905.190 kb on + strandat 905.190 kb on + strandat 905.190 kb on + strandat 905.191 kb on - strandat 905.191 kb on - strandat 905.218 kb on - strandat 905.227 kb on + strandat 905.227 kb on + strandat 905.228 kb on - strandat 905.228 kb on - strandat 905.228 kb on - strandat 905.228 kb on - strandat 905.228 kb on - strandat 905.428 kb on + strand, within PFR28_00832at 905.429 kb on - strand, within PFR28_00832at 905.440 kb on + strand, within PFR28_00832at 905.441 kb on - strand, within PFR28_00832at 905.441 kb on - strand, within PFR28_00832at 905.506 kb on + strand, within PFR28_00832at 905.507 kb on - strand, within PFR28_00832at 905.509 kb on - strand, within PFR28_00832at 905.509 kb on - strand, within PFR28_00832at 905.709 kb on + strand, within PFR28_00832at 905.775 kb on - strand, within PFR28_00832at 905.824 kb on + strand, within PFR28_00832at 905.824 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.037 kb on - strand, within PFR28_00832at 906.037 kb on - strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.071 kb on - strand, within PFR28_00832at 906.071 kb on - strand, within PFR28_00832at 906.289 kb on - strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.315 kb on - strand, within PFR28_00832at 906.315 kb on - strand, within PFR28_00832at 906.564 kb on + strand, within PFR28_00832at 906.680 kb on - strand, within PFR28_00832at 906.716 kb on + strand, within PFR28_00832at 906.716 kb on + strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.925 kb on + strandat 906.925 kb on + strandat 906.925 kb on + strandat 906.926 kb on - strandat 906.926 kb on - strandat 906.926 kb on - strandat 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.563 kb on + strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.812 kb on + strand, within PFR28_00833at 907.812 kb on + strand, within PFR28_00833at 907.813 kb on - strand, within PFR28_00833at 907.813 kb on - strand, within PFR28_00833

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
remove
904,285 + PFR28_00830 0.73 -0.2
904,600 + -0.4
904,601 - -0.1
904,601 - +1.1
904,601 - -0.4
904,637 + -1.5
904,637 + +1.8
904,637 + +0.8
904,638 - -0.6
904,638 - -1.2
904,638 - -0.6
904,638 - +0.3
904,638 - -0.3
904,638 - -0.2
904,638 - +0.4
904,638 - +0.4
904,645 + -1.6
904,645 + -1.3
904,646 - +0.4
904,646 - -0.2
904,799 + -0.2
904,832 - +2.0
904,832 - +0.7
904,841 - -0.2
904,841 - +0.7
904,841 - +1.0
904,853 + -0.2
904,854 - +1.3
904,887 + -0.6
904,888 - +0.8
904,904 + +0.8
904,905 - +0.2
904,913 + -0.2
905,033 + PFR28_00831 0.43 +0.2
905,060 + PFR28_00831 0.51 +0.5
905,116 + PFR28_00831 0.68 -0.2
905,116 + PFR28_00831 0.68 +0.8
905,116 + PFR28_00831 0.68 +0.8
905,116 + PFR28_00831 0.68 +0.8
905,116 + PFR28_00831 0.68 +1.1
905,116 + PFR28_00831 0.68 +1.2
905,116 + PFR28_00831 0.68 -0.2
905,116 + PFR28_00831 0.68 +1.4
905,116 + PFR28_00831 0.68 +0.6
905,116 + PFR28_00831 0.68 +0.6
905,116 + PFR28_00831 0.68 +0.0
905,116 + PFR28_00831 0.68 +1.2
905,116 + PFR28_00831 0.68 +0.8
905,116 + PFR28_00831 0.68 +0.4
905,116 + PFR28_00831 0.68 +0.9
905,116 + PFR28_00831 0.68 +0.7
905,117 - PFR28_00831 0.69 +0.6
905,117 - PFR28_00831 0.69 +0.3
905,117 - PFR28_00831 0.69 +0.6
905,117 - PFR28_00831 0.69 +0.7
905,117 - PFR28_00831 0.69 +1.4
905,117 - PFR28_00831 0.69 +0.7
905,117 - PFR28_00831 0.69 +0.8
905,117 - PFR28_00831 0.69 +0.5
905,117 - PFR28_00831 0.69 +0.4
905,117 - PFR28_00831 0.69 +1.3
905,117 - PFR28_00831 0.69 +0.7
905,117 - PFR28_00831 0.69 +0.9
905,117 - PFR28_00831 0.69 +1.2
905,117 - PFR28_00831 0.69 +0.0
905,117 - PFR28_00831 0.69 +3.3
905,117 - PFR28_00831 0.69 +0.1
905,190 + +0.3
905,190 + +1.1
905,190 + +0.5
905,190 + +0.9
905,191 - +0.8
905,191 - +0.6
905,218 - +0.3
905,227 + +0.7
905,227 + -0.2
905,228 - +0.2
905,228 - +0.8
905,228 - +0.1
905,228 - -0.6
905,228 - +0.8
905,428 + PFR28_00832 0.11 +1.2
905,429 - PFR28_00832 0.11 +0.3
905,440 + PFR28_00832 0.11 +1.4
905,441 - PFR28_00832 0.11 +0.3
905,441 - PFR28_00832 0.11 -2.4
905,506 + PFR28_00832 0.15 +2.8
905,507 - PFR28_00832 0.15 +0.4
905,509 - PFR28_00832 0.15 +1.0
905,509 - PFR28_00832 0.15 +0.4
905,709 + PFR28_00832 0.26 +0.7
905,775 - PFR28_00832 0.30 -0.4
905,824 + PFR28_00832 0.33 +0.8
905,824 + PFR28_00832 0.33 +0.8
906,036 + PFR28_00832 0.45 +0.6
906,036 + PFR28_00832 0.45 +0.4
906,036 + PFR28_00832 0.45 +0.7
906,036 + PFR28_00832 0.45 +0.7
906,036 + PFR28_00832 0.45 -0.0
906,037 - PFR28_00832 0.45 +1.0
906,037 - PFR28_00832 0.45 +0.9
906,070 + PFR28_00832 0.47 +0.7
906,070 + PFR28_00832 0.47 +1.1
906,070 + PFR28_00832 0.47 +1.0
906,070 + PFR28_00832 0.47 +0.7
906,071 - PFR28_00832 0.47 +0.1
906,071 - PFR28_00832 0.47 +0.5
906,289 - PFR28_00832 0.59 +1.1
906,314 + PFR28_00832 0.60 +1.0
906,314 + PFR28_00832 0.60 +0.5
906,314 + PFR28_00832 0.60 +0.5
906,315 - PFR28_00832 0.60 -0.1
906,315 - PFR28_00832 0.60 +1.0
906,564 + PFR28_00832 0.74 +0.5
906,680 - PFR28_00832 0.81 +0.7
906,716 + PFR28_00832 0.83 +0.5
906,716 + PFR28_00832 0.83 +0.7
906,717 - PFR28_00832 0.83 +0.8
906,717 - PFR28_00832 0.83 +0.9
906,717 - PFR28_00832 0.83 +0.5
906,824 + PFR28_00832 0.89 +0.8
906,824 + PFR28_00832 0.89 +0.6
906,824 + PFR28_00832 0.89 +0.5
906,824 + PFR28_00832 0.89 +0.5
906,824 + PFR28_00832 0.89 +0.7
906,824 + PFR28_00832 0.89 -0.6
906,825 - PFR28_00832 0.89 +0.5
906,825 - PFR28_00832 0.89 +0.6
906,825 - PFR28_00832 0.89 +0.9
906,825 - PFR28_00832 0.89 +0.3
906,825 - PFR28_00832 0.89 +0.8
906,825 - PFR28_00832 0.89 +1.5
906,925 + +0.3
906,925 + +1.0
906,925 + +0.9
906,926 - +1.3
906,926 - +1.1
906,926 - +1.3
907,259 + PFR28_00833 0.24 +0.8
907,259 + PFR28_00833 0.24 +0.5
907,259 + PFR28_00833 0.24 +1.3
907,259 + PFR28_00833 0.24 +0.6
907,259 + PFR28_00833 0.24 +1.1
907,259 + PFR28_00833 0.24 +0.7
907,259 + PFR28_00833 0.24 -0.1
907,260 - PFR28_00833 0.24 +0.9
907,260 - PFR28_00833 0.24 +0.5
907,260 - PFR28_00833 0.24 +1.0
907,260 - PFR28_00833 0.24 +1.6
907,260 - PFR28_00833 0.24 +0.3
907,563 + PFR28_00833 0.54 +0.4
907,564 - PFR28_00833 0.54 +0.3
907,564 - PFR28_00833 0.54 +0.5
907,564 - PFR28_00833 0.54 +0.2
907,812 + PFR28_00833 0.78 +1.0
907,812 + PFR28_00833 0.78 -0.7
907,813 - PFR28_00833 0.78 +1.4
907,813 - PFR28_00833 0.78 +1.4

Or see this region's nucleotide sequence