Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00821 and PFR28_00822 overlap by 4 nucleotides PFR28_00822 and PFR28_00823 are separated by 250 nucleotides PFR28_00823 and PFR28_00824 are separated by 72 nucleotides PFR28_00824 and PFR28_00825 are separated by 81 nucleotides
PFR28_00821: PFR28_00821 - hypothetical protein, at 894,839 to 896,131
_00821
PFR28_00822: PFR28_00822 - hypothetical protein, at 896,128 to 896,397
_00822
PFR28_00823: PFR28_00823 - Flagellin, at 896,648 to 897,499
_00823
PFR28_00824: PFR28_00824 - hypothetical protein, at 897,572 to 897,937
_00824
PFR28_00825: PFR28_00825 - B-type flagellar hook-associated protein 2, at 898,019 to 899,455
_00825
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 895.648 kb on - strand, within PFR28_00821 at 895.648 kb on - strand, within PFR28_00821 at 895.648 kb on - strand, within PFR28_00821 at 895.660 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.682 kb on + strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.683 kb on - strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.684 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.733 kb on + strand, within PFR28_00821 at 895.761 kb on - strand, within PFR28_00821 at 895.842 kb on + strand, within PFR28_00821 at 895.843 kb on - strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.932 kb on + strand, within PFR28_00821 at 895.933 kb on - strand, within PFR28_00821 at 895.933 kb on - strand, within PFR28_00821 at 896.015 kb on + strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.016 kb on - strand at 896.066 kb on + strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.067 kb on - strand at 896.068 kb on + strand at 896.068 kb on + strand at 896.068 kb on + strand at 896.069 kb on - strand at 896.069 kb on - strand at 896.256 kb on + strand, within PFR28_00822 at 896.256 kb on + strand, within PFR28_00822 at 896.257 kb on - strand, within PFR28_00822 at 896.257 kb on - strand, within PFR28_00822 at 896.278 kb on + strand, within PFR28_00822 at 896.279 kb on - strand, within PFR28_00822 at 896.279 kb on - strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.306 kb on + strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.307 kb on - strand, within PFR28_00822 at 896.347 kb on + strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.348 kb on - strand, within PFR28_00822 at 896.356 kb on + strand, within PFR28_00822 at 896.357 kb on - strand, within PFR28_00822 at 896.357 kb on - strand, within PFR28_00822 at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.372 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.395 kb on + strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.396 kb on - strand at 896.542 kb on - strand at 896.542 kb on - strand at 896.565 kb on + strand at 896.565 kb on + strand at 896.565 kb on + strand at 896.566 kb on - strand at 896.566 kb on - strand at 896.566 kb on - strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.569 kb on + strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.570 kb on - strand at 896.572 kb on + strand at 896.572 kb on + strand at 896.572 kb on + strand at 896.573 kb on - strand at 896.573 kb on - strand at 896.585 kb on + strand at 896.625 kb on - strand at 896.655 kb on + strand at 896.656 kb on - strand at 896.661 kb on + strand at 896.661 kb on + strand at 896.661 kb on + strand at 896.668 kb on + strand at 896.668 kb on + strand at 896.668 kb on + strand at 896.806 kb on + strand, within PFR28_00823 at 896.806 kb on + strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.807 kb on - strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.860 kb on + strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.861 kb on - strand, within PFR28_00823 at 896.920 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.001 kb on + strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.002 kb on - strand, within PFR28_00823 at 897.068 kb on - strand, within PFR28_00823 at 897.372 kb on + strand, within PFR28_00823 at 897.373 kb on - strand, within PFR28_00823 at 897.373 kb on - strand, within PFR28_00823 at 897.373 kb on - strand, within PFR28_00823 at 897.373 kb on - strand, within PFR28_00823 at 897.480 kb on + strand at 897.480 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.497 kb on + strand at 897.498 kb on - strand at 897.498 kb on - strand at 897.500 kb on + strand at 897.516 kb on - strand at 897.536 kb on + strand at 897.536 kb on + strand at 897.537 kb on - strand at 897.537 kb on - strand at 897.537 kb on - strand at 897.537 kb on - strand at 897.577 kb on + strand at 897.577 kb on + strand at 897.578 kb on - strand at 897.578 kb on - strand at 897.602 kb on + strand at 897.603 kb on - strand at 897.603 kb on - strand at 897.697 kb on + strand, within PFR28_00824 at 897.790 kb on + strand, within PFR28_00824 at 897.790 kb on + strand, within PFR28_00824 at 897.790 kb on + strand, within PFR28_00824 at 897.790 kb on + strand, within PFR28_00824 at 897.813 kb on + strand, within PFR28_00824 at 897.813 kb on + strand, within PFR28_00824 at 897.814 kb on - strand, within PFR28_00824 at 897.880 kb on + strand, within PFR28_00824 at 897.881 kb on - strand, within PFR28_00824 at 897.881 kb on - strand, within PFR28_00824 at 897.881 kb on - strand, within PFR28_00824 at 897.881 kb on - strand, within PFR28_00824 at 897.978 kb on + strand at 897.978 kb on + strand at 897.978 kb on + strand at 897.978 kb on + strand at 897.978 kb on + strand at 898.035 kb on + strand at 898.050 kb on + strand at 898.067 kb on - strand at 898.075 kb on + strand at 898.076 kb on - strand at 898.144 kb on + strand at 898.144 kb on + strand at 898.144 kb on + strand at 898.144 kb on + strand at 898.144 kb on + strand at 898.145 kb on - strand at 898.145 kb on - strand at 898.226 kb on - strand, within PFR28_00825 at 898.244 kb on - strand, within PFR28_00825 at 898.270 kb on + strand, within PFR28_00825 at 898.319 kb on + strand, within PFR28_00825 at 898.319 kb on + strand, within PFR28_00825 at 898.319 kb on + strand, within PFR28_00825 at 898.319 kb on + strand, within PFR28_00825 at 898.319 kb on + strand, within PFR28_00825 at 898.320 kb on - strand, within PFR28_00825 at 898.320 kb on - strand, within PFR28_00825 at 898.320 kb on - strand, within PFR28_00825 at 898.320 kb on - strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.439 kb on + strand, within PFR28_00825 at 898.440 kb on - strand, within PFR28_00825 at 898.440 kb on - strand, within PFR28_00825 at 898.440 kb on - strand, within PFR28_00825 at 898.440 kb on - strand, within PFR28_00825 at 898.441 kb on + strand, within PFR28_00825 at 898.441 kb on + strand, within PFR28_00825 at 898.441 kb on + strand, within PFR28_00825 at 898.441 kb on + strand, within PFR28_00825 at 898.441 kb on + strand, within PFR28_00825 at 898.442 kb on - strand, within PFR28_00825 at 898.442 kb on - strand, within PFR28_00825 at 898.442 kb on - strand, within PFR28_00825 at 898.442 kb on - strand, within PFR28_00825 at 898.442 kb on - strand, within PFR28_00825 at 898.452 kb on + strand, within PFR28_00825 at 898.452 kb on + strand, within PFR28_00825 at 898.453 kb on - strand, within PFR28_00825
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 895,648 - PFR28_00821 0.63 +0.2 895,648 - PFR28_00821 0.63 +1.3 895,648 - PFR28_00821 0.63 -3.1 895,660 + PFR28_00821 0.63 -0.0 895,682 + PFR28_00821 0.65 +1.3 895,682 + PFR28_00821 0.65 +0.4 895,682 + PFR28_00821 0.65 -0.8 895,682 + PFR28_00821 0.65 +1.6 895,682 + PFR28_00821 0.65 +0.5 895,682 + PFR28_00821 0.65 -0.4 895,682 + PFR28_00821 0.65 +0.1 895,682 + PFR28_00821 0.65 -0.2 895,682 + PFR28_00821 0.65 -2.5 895,682 + PFR28_00821 0.65 -0.8 895,682 + PFR28_00821 0.65 -2.2 895,682 + PFR28_00821 0.65 -0.2 895,682 + PFR28_00821 0.65 +0.3 895,683 - PFR28_00821 0.65 +0.6 895,683 - PFR28_00821 0.65 +0.4 895,683 - PFR28_00821 0.65 +1.0 895,683 - PFR28_00821 0.65 -0.6 895,683 - PFR28_00821 0.65 -0.7 895,684 + PFR28_00821 0.65 +1.7 895,684 + PFR28_00821 0.65 -0.7 895,684 + PFR28_00821 0.65 +0.3 895,733 + PFR28_00821 0.69 -1.0 895,733 + PFR28_00821 0.69 -0.0 895,733 + PFR28_00821 0.69 +0.1 895,761 - PFR28_00821 0.71 -0.4 895,842 + PFR28_00821 0.78 -0.7 895,843 - PFR28_00821 0.78 +1.3 895,932 + PFR28_00821 0.85 -1.2 895,932 + PFR28_00821 0.85 +0.5 895,932 + PFR28_00821 0.85 +0.1 895,933 - PFR28_00821 0.85 +0.1 895,933 - PFR28_00821 0.85 -2.0 896,015 + -0.7 896,016 - +0.3 896,016 - -2.0 896,016 - -1.2 896,016 - +0.4 896,016 - -0.9 896,066 + -1.1 896,067 - -0.4 896,067 - -0.3 896,067 - +0.4 896,067 - -1.5 896,067 - -0.0 896,067 - -0.5 896,067 - -0.9 896,067 - -1.0 896,067 - +1.6 896,067 - +0.3 896,068 + +0.5 896,068 + +0.4 896,068 + +0.2 896,069 - -0.2 896,069 - +0.7 896,256 + PFR28_00822 0.47 -0.4 896,256 + PFR28_00822 0.47 +0.7 896,257 - PFR28_00822 0.48 -0.2 896,257 - PFR28_00822 0.48 -0.2 896,278 + PFR28_00822 0.56 +0.7 896,279 - PFR28_00822 0.56 +1.6 896,279 - PFR28_00822 0.56 +1.9 896,306 + PFR28_00822 0.66 -0.0 896,306 + PFR28_00822 0.66 -1.2 896,306 + PFR28_00822 0.66 +0.8 896,306 + PFR28_00822 0.66 +2.3 896,306 + PFR28_00822 0.66 -0.2 896,306 + PFR28_00822 0.66 -0.3 896,306 + PFR28_00822 0.66 +0.2 896,306 + PFR28_00822 0.66 +0.0 896,306 + PFR28_00822 0.66 -0.3 896,306 + PFR28_00822 0.66 +0.8 896,306 + PFR28_00822 0.66 +0.3 896,307 - PFR28_00822 0.66 -0.5 896,307 - PFR28_00822 0.66 -1.7 896,307 - PFR28_00822 0.66 +0.2 896,307 - PFR28_00822 0.66 +0.1 896,307 - PFR28_00822 0.66 -1.5 896,307 - PFR28_00822 0.66 -0.2 896,307 - PFR28_00822 0.66 -0.5 896,347 + PFR28_00822 0.81 +0.1 896,348 - PFR28_00822 0.81 -0.1 896,348 - PFR28_00822 0.81 -1.4 896,348 - PFR28_00822 0.81 -0.2 896,356 + PFR28_00822 0.84 -0.2 896,357 - PFR28_00822 0.85 +0.8 896,357 - PFR28_00822 0.85 +0.1 896,372 + +0.0 896,372 + -0.1 896,372 + +2.3 896,372 + +0.3 896,372 + +0.4 896,372 + -0.2 896,395 + -0.7 896,395 + -0.6 896,395 + -0.2 896,395 + -0.0 896,396 - +0.3 896,396 - +0.1 896,396 - +0.3 896,396 - +0.9 896,542 - +0.3 896,542 - -0.5 896,565 + +0.5 896,565 + +0.4 896,565 + +0.3 896,566 - +0.5 896,566 - +0.3 896,566 - -0.5 896,569 + +0.6 896,569 + +0.8 896,569 + +0.3 896,569 + +1.2 896,569 + +1.8 896,570 - +1.0 896,570 - +0.4 896,570 - +0.2 896,570 - -0.1 896,570 - +0.8 896,570 - +0.6 896,570 - +0.4 896,570 - +1.5 896,570 - +1.4 896,572 + +0.5 896,572 + +0.7 896,572 + +0.0 896,573 - +0.8 896,573 - +0.8 896,585 + -0.3 896,625 - +0.5 896,655 + +1.0 896,656 - +1.3 896,661 + +0.5 896,661 + +1.4 896,661 + +0.2 896,668 + +0.1 896,668 + +0.3 896,668 + +1.1 896,806 + PFR28_00823 0.19 +0.7 896,806 + PFR28_00823 0.19 +0.4 896,807 - PFR28_00823 0.19 +0.0 896,807 - PFR28_00823 0.19 -0.1 896,807 - PFR28_00823 0.19 +0.3 896,807 - PFR28_00823 0.19 +0.5 896,860 + PFR28_00823 0.25 +0.2 896,860 + PFR28_00823 0.25 +0.9 896,860 + PFR28_00823 0.25 +0.3 896,860 + PFR28_00823 0.25 -0.0 896,860 + PFR28_00823 0.25 +1.0 896,860 + PFR28_00823 0.25 +0.8 896,860 + PFR28_00823 0.25 +0.4 896,860 + PFR28_00823 0.25 +0.6 896,861 - PFR28_00823 0.25 +1.3 896,861 - PFR28_00823 0.25 +0.4 896,861 - PFR28_00823 0.25 +1.5 896,861 - PFR28_00823 0.25 +0.8 896,861 - PFR28_00823 0.25 +0.2 896,920 + PFR28_00823 0.32 +1.0 897,001 + PFR28_00823 0.41 +0.5 897,001 + PFR28_00823 0.41 +0.3 897,001 + PFR28_00823 0.41 -0.7 897,001 + PFR28_00823 0.41 +0.3 897,001 + PFR28_00823 0.41 +0.6 897,001 + PFR28_00823 0.41 -0.3 897,001 + PFR28_00823 0.41 -2.0 897,001 + PFR28_00823 0.41 -0.1 897,001 + PFR28_00823 0.41 +1.1 897,001 + PFR28_00823 0.41 +1.0 897,001 + PFR28_00823 0.41 +0.4 897,002 - PFR28_00823 0.42 +1.4 897,002 - PFR28_00823 0.42 +0.8 897,002 - PFR28_00823 0.42 +0.6 897,002 - PFR28_00823 0.42 +0.4 897,002 - PFR28_00823 0.42 +1.0 897,002 - PFR28_00823 0.42 +1.4 897,002 - PFR28_00823 0.42 +0.8 897,068 - PFR28_00823 0.49 +0.8 897,372 + PFR28_00823 0.85 +1.1 897,373 - PFR28_00823 0.85 +0.3 897,373 - PFR28_00823 0.85 -2.2 897,373 - PFR28_00823 0.85 +0.4 897,373 - PFR28_00823 0.85 +0.2 897,480 + +0.3 897,480 + -0.5 897,497 + +1.5 897,497 + -0.1 897,497 + -0.6 897,497 + +0.2 897,497 + -1.3 897,497 + +1.3 897,497 + +0.1 897,498 - +0.6 897,498 - +1.0 897,500 + -1.2 897,516 - -0.4 897,536 + -0.2 897,536 + +0.7 897,537 - +0.0 897,537 - -0.0 897,537 - +0.1 897,537 - -1.3 897,577 + +0.2 897,577 + +0.3 897,578 - +0.3 897,578 - -1.1 897,602 + -0.6 897,603 - -1.5 897,603 - -1.9 897,697 + PFR28_00824 0.34 +0.1 897,790 + PFR28_00824 0.60 +0.2 897,790 + PFR28_00824 0.60 +0.1 897,790 + PFR28_00824 0.60 -0.9 897,790 + PFR28_00824 0.60 -2.5 897,813 + PFR28_00824 0.66 -2.0 897,813 + PFR28_00824 0.66 -2.2 897,814 - PFR28_00824 0.66 -0.2 897,880 + PFR28_00824 0.84 -0.9 897,881 - PFR28_00824 0.84 -0.9 897,881 - PFR28_00824 0.84 -0.8 897,881 - PFR28_00824 0.84 +0.2 897,881 - PFR28_00824 0.84 +1.3 897,978 + +0.0 897,978 + -0.9 897,978 + -0.6 897,978 + -0.9 897,978 + -0.6 898,035 + +1.5 898,050 + -0.3 898,067 - +2.7 898,075 + +1.3 898,076 - +2.4 898,144 + +0.6 898,144 + +1.3 898,144 + -0.1 898,144 + +0.4 898,144 + +1.7 898,145 - +0.8 898,145 - +0.3 898,226 - PFR28_00825 0.14 +0.8 898,244 - PFR28_00825 0.16 +2.8 898,270 + PFR28_00825 0.17 +1.4 898,319 + PFR28_00825 0.21 +0.5 898,319 + PFR28_00825 0.21 +0.5 898,319 + PFR28_00825 0.21 +0.8 898,319 + PFR28_00825 0.21 +0.5 898,319 + PFR28_00825 0.21 +1.2 898,320 - PFR28_00825 0.21 +0.1 898,320 - PFR28_00825 0.21 -0.7 898,320 - PFR28_00825 0.21 +1.0 898,320 - PFR28_00825 0.21 +0.3 898,439 + PFR28_00825 0.29 +0.2 898,439 + PFR28_00825 0.29 -1.5 898,439 + PFR28_00825 0.29 +0.8 898,439 + PFR28_00825 0.29 -0.2 898,439 + PFR28_00825 0.29 +1.7 898,439 + PFR28_00825 0.29 +0.9 898,440 - PFR28_00825 0.29 +1.8 898,440 - PFR28_00825 0.29 +0.7 898,440 - PFR28_00825 0.29 -0.9 898,440 - PFR28_00825 0.29 +0.7 898,441 + PFR28_00825 0.29 +0.1 898,441 + PFR28_00825 0.29 +0.3 898,441 + PFR28_00825 0.29 +0.8 898,441 + PFR28_00825 0.29 +2.3 898,441 + PFR28_00825 0.29 +0.5 898,442 - PFR28_00825 0.29 +1.4 898,442 - PFR28_00825 0.29 +1.2 898,442 - PFR28_00825 0.29 +1.8 898,442 - PFR28_00825 0.29 +1.3 898,442 - PFR28_00825 0.29 -2.3 898,452 + PFR28_00825 0.30 +0.8 898,452 + PFR28_00825 0.30 -0.1 898,453 - PFR28_00825 0.30 +0.1
Or see this region's nucleotide sequence