Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00804 and PFR28_00805 are separated by 49 nucleotides PFR28_00805 and PFR28_00806 are separated by 48 nucleotides PFR28_00806 and PFR28_00807 are separated by 9 nucleotides
PFR28_00804: PFR28_00804 - Flagellar basal-body rod protein FlgF, at 871,995 to 872,732
_00804
PFR28_00805: PFR28_00805 - Flagellar basal-body rod protein FlgG, at 872,782 to 873,567
_00805
PFR28_00806: PFR28_00806 - Flagellar L-ring protein, at 873,616 to 874,311
_00806
PFR28_00807: PFR28_00807 - Flagellar P-ring protein, at 874,321 to 875,427
_00807
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 871.804 kb on - strand at 871.852 kb on + strand at 871.852 kb on + strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.853 kb on - strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.005 kb on - strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.010 kb on + strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.011 kb on - strand at 872.107 kb on + strand, within PFR28_00804 at 872.107 kb on + strand, within PFR28_00804 at 872.107 kb on + strand, within PFR28_00804 at 872.107 kb on + strand, within PFR28_00804 at 872.107 kb on + strand, within PFR28_00804 at 872.108 kb on - strand, within PFR28_00804 at 872.108 kb on - strand, within PFR28_00804 at 872.108 kb on - strand, within PFR28_00804 at 872.289 kb on + strand, within PFR28_00804 at 872.289 kb on + strand, within PFR28_00804 at 872.289 kb on + strand, within PFR28_00804 at 872.289 kb on + strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.290 kb on - strand, within PFR28_00804 at 872.730 kb on + strand at 872.730 kb on + strand at 872.731 kb on - strand at 872.731 kb on - strand at 872.731 kb on - strand at 872.731 kb on - strand at 872.737 kb on + strand at 872.737 kb on + strand at 872.737 kb on + strand at 872.737 kb on + strand at 872.738 kb on - strand at 872.738 kb on - strand at 872.738 kb on - strand at 872.738 kb on - strand at 872.738 kb on - strand at 872.738 kb on - strand at 872.741 kb on + strand at 872.741 kb on + strand at 872.767 kb on + strand at 872.795 kb on + strand at 872.795 kb on + strand at 872.796 kb on - strand at 872.917 kb on + strand, within PFR28_00805 at 872.917 kb on + strand, within PFR28_00805 at 872.918 kb on - strand, within PFR28_00805 at 872.918 kb on - strand, within PFR28_00805 at 872.988 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.121 kb on + strand, within PFR28_00805 at 873.122 kb on - strand, within PFR28_00805 at 873.122 kb on - strand, within PFR28_00805 at 873.122 kb on - strand, within PFR28_00805 at 873.122 kb on - strand, within PFR28_00805 at 873.135 kb on + strand, within PFR28_00805 at 873.135 kb on + strand, within PFR28_00805 at 873.135 kb on + strand, within PFR28_00805 at 873.135 kb on + strand, within PFR28_00805 at 873.136 kb on - strand, within PFR28_00805 at 873.136 kb on - strand, within PFR28_00805 at 873.566 kb on - strand at 873.603 kb on + strand at 873.603 kb on + strand at 873.603 kb on + strand at 873.603 kb on + strand at 873.604 kb on - strand at 873.604 kb on - strand at 873.604 kb on - strand at 873.609 kb on + strand at 873.610 kb on - strand at 873.610 kb on - strand at 873.610 kb on - strand at 873.610 kb on - strand at 873.610 kb on - strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.629 kb on + strand at 873.630 kb on - strand at 873.630 kb on - strand at 873.630 kb on - strand at 873.630 kb on - strand at 873.630 kb on - strand at 873.630 kb on - strand at 873.682 kb on - strand at 873.703 kb on + strand, within PFR28_00806 at 873.704 kb on - strand, within PFR28_00806 at 873.704 kb on - strand, within PFR28_00806 at 873.704 kb on - strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.706 kb on + strand, within PFR28_00806 at 873.707 kb on - strand, within PFR28_00806 at 873.707 kb on - strand, within PFR28_00806 at 873.707 kb on - strand, within PFR28_00806 at 873.707 kb on - strand, within PFR28_00806 at 873.764 kb on - strand, within PFR28_00806 at 873.764 kb on - strand, within PFR28_00806 at 873.791 kb on - strand, within PFR28_00806 at 873.912 kb on + strand, within PFR28_00806 at 874.147 kb on - strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.224 kb on + strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.225 kb on - strand, within PFR28_00806 at 874.228 kb on + strand, within PFR28_00806 at 874.228 kb on + strand, within PFR28_00806 at 874.228 kb on + strand, within PFR28_00806 at 874.228 kb on + strand, within PFR28_00806 at 874.229 kb on - strand, within PFR28_00806 at 874.229 kb on - strand, within PFR28_00806 at 874.309 kb on + strand at 874.309 kb on + strand at 874.309 kb on + strand at 874.310 kb on - strand at 874.310 kb on - strand at 874.310 kb on - strand at 874.310 kb on - strand at 874.310 kb on - strand at 874.329 kb on + strand at 874.329 kb on + strand at 874.329 kb on + strand at 874.330 kb on - strand at 874.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 871,804 - +0.2 871,852 + -0.3 871,852 + +0.0 871,853 - +0.8 871,853 - -0.2 871,853 - +0.9 871,853 - -0.2 872,004 + +0.9 872,004 + -0.1 872,004 + +0.8 872,004 + +0.6 872,004 + +1.0 872,004 + +0.9 872,004 + +1.1 872,004 + +1.5 872,004 + +0.7 872,004 + +1.0 872,004 + +1.0 872,004 + +0.5 872,004 + +0.9 872,004 + +0.5 872,004 + +1.1 872,004 + +0.9 872,004 + +1.0 872,004 + +0.5 872,004 + +0.7 872,005 - +0.8 872,005 - +1.0 872,005 - +0.8 872,005 - +0.3 872,005 - -0.2 872,005 - +0.1 872,005 - +1.1 872,005 - +0.6 872,005 - +0.6 872,005 - -0.5 872,005 - +0.1 872,010 + +1.0 872,010 + +0.3 872,010 + +0.8 872,010 + +0.9 872,010 + +0.5 872,010 + +0.5 872,010 + +0.5 872,010 + -1.3 872,011 - +1.5 872,011 - +1.0 872,011 - +0.3 872,011 - +1.4 872,011 - +1.8 872,011 - +1.1 872,011 - -0.2 872,011 - -1.0 872,011 - +0.9 872,011 - +0.8 872,011 - +1.0 872,011 - -0.6 872,011 - +0.8 872,011 - +0.3 872,107 + PFR28_00804 0.15 -0.2 872,107 + PFR28_00804 0.15 +1.1 872,107 + PFR28_00804 0.15 +0.7 872,107 + PFR28_00804 0.15 +0.6 872,107 + PFR28_00804 0.15 +0.3 872,108 - PFR28_00804 0.15 -0.3 872,108 - PFR28_00804 0.15 +0.6 872,108 - PFR28_00804 0.15 -0.1 872,289 + PFR28_00804 0.40 -1.2 872,289 + PFR28_00804 0.40 +0.5 872,289 + PFR28_00804 0.40 +0.8 872,289 + PFR28_00804 0.40 +0.2 872,290 - PFR28_00804 0.40 +0.8 872,290 - PFR28_00804 0.40 +0.3 872,290 - PFR28_00804 0.40 +0.6 872,290 - PFR28_00804 0.40 -0.4 872,290 - PFR28_00804 0.40 +0.4 872,290 - PFR28_00804 0.40 +0.9 872,290 - PFR28_00804 0.40 +1.3 872,290 - PFR28_00804 0.40 +0.8 872,290 - PFR28_00804 0.40 +0.9 872,730 + +0.8 872,730 + -1.2 872,731 - +0.2 872,731 - +1.1 872,731 - +0.6 872,731 - +0.7 872,737 + -2.2 872,737 + -1.2 872,737 + -0.6 872,737 + -0.3 872,738 - +1.0 872,738 - +0.7 872,738 - -0.0 872,738 - +1.0 872,738 - +1.0 872,738 - -1.2 872,741 + +1.8 872,741 + +0.1 872,767 + -1.4 872,795 + +0.3 872,795 + +0.1 872,796 - -0.3 872,917 + PFR28_00805 0.17 +0.6 872,917 + PFR28_00805 0.17 +0.2 872,918 - PFR28_00805 0.17 +0.4 872,918 - PFR28_00805 0.17 +0.3 872,988 + PFR28_00805 0.26 +0.6 873,121 + PFR28_00805 0.43 +1.4 873,121 + PFR28_00805 0.43 -0.1 873,121 + PFR28_00805 0.43 +0.4 873,121 + PFR28_00805 0.43 +0.5 873,121 + PFR28_00805 0.43 +0.7 873,121 + PFR28_00805 0.43 -0.7 873,121 + PFR28_00805 0.43 +0.4 873,122 - PFR28_00805 0.43 +0.7 873,122 - PFR28_00805 0.43 +0.7 873,122 - PFR28_00805 0.43 +0.4 873,122 - PFR28_00805 0.43 +0.2 873,135 + PFR28_00805 0.45 +0.5 873,135 + PFR28_00805 0.45 +0.9 873,135 + PFR28_00805 0.45 +1.1 873,135 + PFR28_00805 0.45 +0.9 873,136 - PFR28_00805 0.45 -0.2 873,136 - PFR28_00805 0.45 +1.3 873,566 - +0.9 873,603 + -1.7 873,603 + +0.5 873,603 + +0.4 873,603 + -0.3 873,604 - +0.3 873,604 - +0.3 873,604 - +0.2 873,609 + +1.5 873,610 - -1.6 873,610 - +0.8 873,610 - -0.1 873,610 - +0.3 873,610 - +0.7 873,629 + +1.4 873,629 + +0.8 873,629 + +2.2 873,629 + +0.6 873,629 + +1.4 873,629 + +0.8 873,629 + +2.8 873,630 - +0.4 873,630 - +0.6 873,630 - +0.9 873,630 - +0.2 873,630 - +0.2 873,630 - +0.7 873,682 - -0.2 873,703 + PFR28_00806 0.12 -0.0 873,704 - PFR28_00806 0.13 +1.2 873,704 - PFR28_00806 0.13 +1.0 873,704 - PFR28_00806 0.13 -0.2 873,706 + PFR28_00806 0.13 +0.4 873,706 + PFR28_00806 0.13 +1.2 873,706 + PFR28_00806 0.13 +0.8 873,706 + PFR28_00806 0.13 +1.0 873,706 + PFR28_00806 0.13 +0.5 873,706 + PFR28_00806 0.13 +0.4 873,706 + PFR28_00806 0.13 +0.7 873,707 - PFR28_00806 0.13 +0.5 873,707 - PFR28_00806 0.13 +0.6 873,707 - PFR28_00806 0.13 +1.3 873,707 - PFR28_00806 0.13 +0.8 873,764 - PFR28_00806 0.21 +1.1 873,764 - PFR28_00806 0.21 +0.3 873,791 - PFR28_00806 0.25 +0.3 873,912 + PFR28_00806 0.43 +0.5 874,147 - PFR28_00806 0.76 +0.4 874,224 + PFR28_00806 0.87 +0.7 874,224 + PFR28_00806 0.87 +0.7 874,224 + PFR28_00806 0.87 +0.6 874,224 + PFR28_00806 0.87 +1.4 874,224 + PFR28_00806 0.87 -1.2 874,224 + PFR28_00806 0.87 +0.0 874,225 - PFR28_00806 0.88 +0.9 874,225 - PFR28_00806 0.88 +0.3 874,225 - PFR28_00806 0.88 +1.0 874,225 - PFR28_00806 0.88 +2.1 874,225 - PFR28_00806 0.88 +0.5 874,225 - PFR28_00806 0.88 +0.9 874,228 + PFR28_00806 0.88 +0.8 874,228 + PFR28_00806 0.88 +0.8 874,228 + PFR28_00806 0.88 +0.7 874,228 + PFR28_00806 0.88 +0.6 874,229 - PFR28_00806 0.88 +0.2 874,229 - PFR28_00806 0.88 +0.8 874,309 + -1.2 874,309 + +0.3 874,309 + -0.3 874,310 - +0.8 874,310 - +0.5 874,310 - -0.6 874,310 - +0.3 874,310 - +1.7 874,329 + +1.0 874,329 + +0.4 874,329 + +0.7 874,330 - +0.0 874,330 - +0.7
Or see this region's nucleotide sequence