Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00600 and PFR28_00601 are separated by 67 nucleotides PFR28_00601 and PFR28_00602 are separated by 27 nucleotides PFR28_00602 and PFR28_00603 overlap by 1 nucleotides
PFR28_00600: PFR28_00600 - hypothetical protein, at 639,425 to 639,859
_00600
PFR28_00601: PFR28_00601 - hypothetical protein, at 639,927 to 640,271
_00601
PFR28_00602: PFR28_00602 - hypothetical protein, at 640,299 to 640,775
_00602
PFR28_00603: PFR28_00603 - hypothetical protein, at 640,775 to 642,013
_00603
Position (kb) 640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 639.326 kb on + strand at 639.326 kb on + strand at 639.327 kb on - strand at 639.327 kb on - strand at 639.327 kb on - strand at 639.347 kb on + strand at 639.348 kb on - strand at 639.431 kb on - strand at 639.431 kb on - strand at 639.469 kb on + strand, within PFR28_00600 at 639.473 kb on + strand, within PFR28_00600 at 639.473 kb on + strand, within PFR28_00600 at 639.473 kb on + strand, within PFR28_00600 at 639.473 kb on + strand, within PFR28_00600 at 639.474 kb on - strand, within PFR28_00600 at 639.474 kb on - strand, within PFR28_00600 at 639.474 kb on - strand, within PFR28_00600 at 639.474 kb on - strand, within PFR28_00600 at 639.474 kb on - strand, within PFR28_00600 at 639.521 kb on + strand, within PFR28_00600 at 639.521 kb on + strand, within PFR28_00600 at 639.521 kb on + strand, within PFR28_00600 at 639.521 kb on + strand, within PFR28_00600 at 639.521 kb on + strand, within PFR28_00600 at 639.522 kb on - strand, within PFR28_00600 at 639.522 kb on - strand, within PFR28_00600 at 639.522 kb on - strand, within PFR28_00600 at 639.522 kb on - strand, within PFR28_00600 at 639.585 kb on - strand, within PFR28_00600 at 639.585 kb on - strand, within PFR28_00600 at 639.699 kb on - strand, within PFR28_00600 at 639.699 kb on - strand, within PFR28_00600 at 639.699 kb on - strand, within PFR28_00600 at 639.762 kb on - strand, within PFR28_00600 at 639.879 kb on + strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.897 kb on + strand at 639.897 kb on + strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 640.012 kb on - strand, within PFR28_00601 at 640.161 kb on + strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.503 kb on + strand, within PFR28_00602 at 640.647 kb on + strand, within PFR28_00602 at 640.814 kb on + strand at 640.815 kb on - strand at 641.345 kb on + strand, within PFR28_00603 at 641.345 kb on + strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.366 kb on + strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.623 kb on + strand, within PFR28_00603 at 641.623 kb on + strand, within PFR28_00603 at 641.642 kb on + strand, within PFR28_00603 at 641.643 kb on - strand, within PFR28_00603 at 641.724 kb on + strand, within PFR28_00603 at 641.725 kb on - strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 639,326 + -0.2 639,326 + -1.4 639,327 - +0.2 639,327 - +0.0 639,327 - +0.1 639,347 + -1.2 639,348 - +0.8 639,431 - -0.5 639,431 - +0.8 639,469 + PFR28_00600 0.10 -0.4 639,473 + PFR28_00600 0.11 -0.1 639,473 + PFR28_00600 0.11 +1.5 639,473 + PFR28_00600 0.11 +1.0 639,473 + PFR28_00600 0.11 -0.5 639,474 - PFR28_00600 0.11 +0.2 639,474 - PFR28_00600 0.11 -1.1 639,474 - PFR28_00600 0.11 -0.7 639,474 - PFR28_00600 0.11 -0.0 639,474 - PFR28_00600 0.11 +0.0 639,521 + PFR28_00600 0.22 +1.8 639,521 + PFR28_00600 0.22 +1.3 639,521 + PFR28_00600 0.22 +0.2 639,521 + PFR28_00600 0.22 +0.3 639,521 + PFR28_00600 0.22 +1.2 639,522 - PFR28_00600 0.22 +0.4 639,522 - PFR28_00600 0.22 +0.3 639,522 - PFR28_00600 0.22 +0.4 639,522 - PFR28_00600 0.22 -0.8 639,585 - PFR28_00600 0.37 +0.3 639,585 - PFR28_00600 0.37 +0.1 639,699 - PFR28_00600 0.63 -0.2 639,699 - PFR28_00600 0.63 -0.1 639,699 - PFR28_00600 0.63 +0.4 639,762 - PFR28_00600 0.77 +0.1 639,879 + +1.4 639,880 - -1.2 639,880 - -3.6 639,880 - -1.2 639,880 - +0.5 639,897 + -1.8 639,897 + -0.3 639,898 - +0.8 639,898 - +0.5 639,898 - -0.1 639,898 - -1.0 639,898 - +0.9 639,933 + +0.5 639,933 + -1.5 639,933 + +0.6 639,933 + -0.2 639,933 + +0.4 639,933 + -0.2 639,933 + -1.7 639,933 + +0.5 639,933 + +0.5 639,933 + -0.1 639,933 + +0.3 639,934 - -0.8 639,934 - +1.6 639,934 - -0.2 639,934 - +0.2 639,934 - +2.1 639,934 - -0.3 639,937 + +0.6 639,937 + -0.6 639,937 + +0.6 639,937 + -2.4 639,937 + -2.3 639,937 + -0.8 639,937 + +0.5 639,937 + +1.0 639,937 + +0.5 639,937 + -1.0 639,937 + -0.8 639,937 + +0.2 639,937 + -0.7 639,937 + +0.2 639,938 - -0.5 639,938 - -0.3 639,938 - +0.3 639,938 - +0.5 639,938 - +0.8 639,938 - +0.4 639,938 - +0.8 639,938 - -0.2 639,938 - +0.4 639,938 - +1.5 639,948 + +0.8 639,948 + -0.1 639,948 + -0.2 639,948 + +0.6 639,948 + +1.8 639,948 + -1.0 639,949 - -0.4 639,949 - -0.5 639,949 - -0.0 639,949 - +1.6 639,949 - -1.6 639,949 - -0.3 639,949 - +0.4 639,949 - -0.3 639,949 - -0.8 639,949 - +0.0 639,949 - +0.8 639,949 - +0.6 639,949 - +1.5 639,949 - -0.1 639,950 + -0.5 639,950 + -0.5 639,950 + +0.4 639,950 + +0.9 639,950 + +0.1 639,951 - +1.9 639,951 - +0.4 639,951 - +0.1 639,951 - +0.6 639,951 - -0.7 639,951 - +0.2 639,951 - +0.4 639,951 - -0.1 640,012 - PFR28_00601 0.25 +0.0 640,161 + PFR28_00601 0.68 -2.0 640,162 - PFR28_00601 0.68 -2.0 640,162 - PFR28_00601 0.68 +0.1 640,162 - PFR28_00601 0.68 -0.1 640,503 + PFR28_00602 0.43 -0.2 640,647 + PFR28_00602 0.73 +1.1 640,814 + +0.0 640,815 - +0.6 641,345 + PFR28_00603 0.46 -1.2 641,345 + PFR28_00603 0.46 +1.3 641,346 - PFR28_00603 0.46 -0.8 641,346 - PFR28_00603 0.46 +0.1 641,346 - PFR28_00603 0.46 -1.2 641,346 - PFR28_00603 0.46 -0.2 641,346 - PFR28_00603 0.46 +0.5 641,346 - PFR28_00603 0.46 -0.7 641,366 + PFR28_00603 0.48 -0.2 641,367 - PFR28_00603 0.48 -0.4 641,367 - PFR28_00603 0.48 -0.6 641,367 - PFR28_00603 0.48 +1.2 641,623 + PFR28_00603 0.68 +0.6 641,623 + PFR28_00603 0.68 +1.0 641,642 + PFR28_00603 0.70 -1.5 641,643 - PFR28_00603 0.70 -0.3 641,724 + PFR28_00603 0.77 -0.7 641,725 - PFR28_00603 0.77 -2.9 641,726 + PFR28_00603 0.77 -1.7 641,726 + PFR28_00603 0.77 +1.2 641,726 + PFR28_00603 0.77 +1.2 641,726 + PFR28_00603 0.77 -0.2 641,726 + PFR28_00603 0.77 +0.8 641,726 + PFR28_00603 0.77 -0.7 641,726 + PFR28_00603 0.77 +0.2 641,726 + PFR28_00603 0.77 +0.3 641,726 + PFR28_00603 0.77 -1.9 641,726 + PFR28_00603 0.77 -0.4 641,726 + PFR28_00603 0.77 -0.4 641,727 - PFR28_00603 0.77 -0.3 641,727 - PFR28_00603 0.77 -0.1 641,727 - PFR28_00603 0.77 -2.2 641,727 - PFR28_00603 0.77 +1.0 641,727 - PFR28_00603 0.77 +0.3 641,733 + PFR28_00603 0.77 -0.0 641,733 + PFR28_00603 0.77 +0.6 641,733 + PFR28_00603 0.77 +1.8 641,733 + PFR28_00603 0.77 +1.5 641,733 + PFR28_00603 0.77 -1.4 641,733 + PFR28_00603 0.77 -0.6 641,733 + PFR28_00603 0.77 +0.5 641,734 - PFR28_00603 0.77 +0.2 641,734 - PFR28_00603 0.77 -0.8 641,734 - PFR28_00603 0.77 +0.8 641,734 - PFR28_00603 0.77 +0.3 641,734 - PFR28_00603 0.77 -0.0 641,734 - PFR28_00603 0.77 -1.2 641,734 - PFR28_00603 0.77 -0.7 641,734 - PFR28_00603 0.77 +0.1 641,734 - PFR28_00603 0.77 +0.2 641,734 - PFR28_00603 0.77 +0.8
Or see this region's nucleotide sequence