Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00554 and PFR28_00555 are separated by 36 nucleotides PFR28_00555 and PFR28_00556 are separated by 117 nucleotides PFR28_00556 and PFR28_00557 are separated by 175 nucleotides
PFR28_00554: PFR28_00554 - Formyl-CoA:oxalate CoA-transferase, at 591,180 to 592,526
_00554
PFR28_00555: PFR28_00555 - Inner membrane protein YbaN, at 592,563 to 593,015
_00555
PFR28_00556: PFR28_00556 - Heme oxygenase PigA, at 593,133 to 593,723
_00556
PFR28_00557: PFR28_00557 - Transferrin-binding protein 1, at 593,899 to 596,493
_00557
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.613 kb on + strand, within PFR28_00554 at 592.244 kb on - strand, within PFR28_00554 at 592.244 kb on - strand, within PFR28_00554 at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.559 kb on + strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.560 kb on - strand at 592.605 kb on - strand at 592.656 kb on + strand, within PFR28_00555 at 592.657 kb on - strand, within PFR28_00555 at 592.682 kb on - strand, within PFR28_00555 at 592.945 kb on + strand, within PFR28_00555 at 592.946 kb on - strand, within PFR28_00555 at 592.946 kb on - strand, within PFR28_00555 at 593.152 kb on + strand at 593.152 kb on + strand at 593.153 kb on - strand at 593.174 kb on + strand at 593.175 kb on - strand at 593.175 kb on - strand at 593.551 kb on + strand, within PFR28_00556 at 593.551 kb on + strand, within PFR28_00556 at 593.551 kb on + strand, within PFR28_00556 at 593.551 kb on + strand, within PFR28_00556 at 593.552 kb on - strand, within PFR28_00556 at 593.552 kb on - strand, within PFR28_00556 at 593.552 kb on - strand, within PFR28_00556 at 593.581 kb on + strand, within PFR28_00556 at 593.582 kb on - strand, within PFR28_00556 at 593.740 kb on + strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.793 kb on + strand at 593.793 kb on + strand at 593.793 kb on + strand at 593.794 kb on - strand at 593.794 kb on - strand at 593.794 kb on - strand at 593.838 kb on + strand at 593.838 kb on + strand at 593.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 591,613 + PFR28_00554 0.32 -0.0 592,244 - PFR28_00554 0.79 -0.5 592,244 - PFR28_00554 0.79 -0.4 592,559 + -0.7 592,559 + +0.7 592,559 + +0.2 592,559 + +0.2 592,559 + -2.0 592,559 + -0.4 592,559 + +1.9 592,559 + +0.0 592,559 + +0.6 592,559 + +0.7 592,559 + +0.9 592,559 + +0.8 592,559 + -1.1 592,559 + -0.8 592,559 + -1.0 592,559 + +0.6 592,559 + +0.9 592,559 + -0.3 592,559 + +0.0 592,559 + -1.3 592,560 - +0.3 592,560 - -0.8 592,560 - -0.1 592,560 - +0.8 592,560 - +0.6 592,560 - +0.2 592,560 - +0.0 592,560 - +0.8 592,560 - +0.8 592,605 - +1.5 592,656 + PFR28_00555 0.21 +0.7 592,657 - PFR28_00555 0.21 +0.8 592,682 - PFR28_00555 0.26 +0.6 592,945 + PFR28_00555 0.84 +1.0 592,946 - PFR28_00555 0.85 +0.0 592,946 - PFR28_00555 0.85 +0.5 593,152 + -1.2 593,152 + +1.4 593,153 - -1.2 593,174 + +0.4 593,175 - +0.7 593,175 - +1.4 593,551 + PFR28_00556 0.71 -0.7 593,551 + PFR28_00556 0.71 -2.3 593,551 + PFR28_00556 0.71 -0.0 593,551 + PFR28_00556 0.71 -0.9 593,552 - PFR28_00556 0.71 -0.2 593,552 - PFR28_00556 0.71 -0.7 593,552 - PFR28_00556 0.71 -0.8 593,581 + PFR28_00556 0.76 +0.2 593,582 - PFR28_00556 0.76 -0.1 593,740 + -0.8 593,741 - +0.1 593,741 - -0.7 593,741 - +0.8 593,793 + -0.4 593,793 + +0.4 593,793 + -1.2 593,794 - -0.5 593,794 - +1.8 593,794 - +0.8 593,838 + -0.4 593,838 + +0.4 593,895 - -0.7
Or see this region's nucleotide sequence