Strain Fitness in Pseudomonas sp. RS175 around PFR28_00473

Experiment: L-Carnitine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00472 and PFR28_00473 are separated by 8 nucleotidesPFR28_00473 and PFR28_00474 are separated by 43 nucleotides PFR28_00472: PFR28_00472 - Protein RecA, at 506,996 to 508,048 _00472 PFR28_00473: PFR28_00473 - Regulatory protein RecX, at 508,057 to 508,524 _00473 PFR28_00474: PFR28_00474 - hypothetical protein, at 508,568 to 509,686 _00474 Position (kb) 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 507.101 kb on - strandat 507.186 kb on - strand, within PFR28_00472at 507.442 kb on - strand, within PFR28_00472at 507.446 kb on - strand, within PFR28_00472at 507.446 kb on - strand, within PFR28_00472at 507.644 kb on + strand, within PFR28_00472at 507.644 kb on + strand, within PFR28_00472at 507.645 kb on - strand, within PFR28_00472at 507.797 kb on + strand, within PFR28_00472at 507.798 kb on - strand, within PFR28_00472at 507.863 kb on + strand, within PFR28_00472at 507.863 kb on + strand, within PFR28_00472at 507.869 kb on + strand, within PFR28_00472at 508.042 kb on + strandat 508.042 kb on + strandat 508.043 kb on - strandat 508.043 kb on - strandat 508.068 kb on - strandat 508.074 kb on + strandat 508.416 kb on - strand, within PFR28_00473at 508.462 kb on + strand, within PFR28_00473at 508.463 kb on - strand, within PFR28_00473at 508.472 kb on - strand, within PFR28_00473at 508.537 kb on + strandat 508.538 kb on - strandat 508.538 kb on - strandat 508.562 kb on - strandat 508.750 kb on - strand, within PFR28_00474at 508.750 kb on - strand, within PFR28_00474at 508.885 kb on + strand, within PFR28_00474at 508.885 kb on + strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.890 kb on + strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.932 kb on - strand, within PFR28_00474at 508.968 kb on + strand, within PFR28_00474at 508.968 kb on + strand, within PFR28_00474at 508.969 kb on - strand, within PFR28_00474at 509.042 kb on + strand, within PFR28_00474at 509.042 kb on + strand, within PFR28_00474at 509.043 kb on - strand, within PFR28_00474at 509.043 kb on - strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.048 kb on + strand, within PFR28_00474at 509.048 kb on + strand, within PFR28_00474at 509.054 kb on + strand, within PFR28_00474at 509.055 kb on - strand, within PFR28_00474at 509.068 kb on + strand, within PFR28_00474at 509.069 kb on - strand, within PFR28_00474at 509.069 kb on - strand, within PFR28_00474at 509.254 kb on + strand, within PFR28_00474at 509.382 kb on + strand, within PFR28_00474at 509.399 kb on - strand, within PFR28_00474at 509.399 kb on - strand, within PFR28_00474

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C)
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507,101 - -0.2
507,186 - PFR28_00472 0.18 -0.8
507,442 - PFR28_00472 0.42 -2.0
507,446 - PFR28_00472 0.43 -0.8
507,446 - PFR28_00472 0.43 -1.2
507,644 + PFR28_00472 0.62 +2.8
507,644 + PFR28_00472 0.62 +0.3
507,645 - PFR28_00472 0.62 -1.6
507,797 + PFR28_00472 0.76 +0.8
507,798 - PFR28_00472 0.76 +0.8
507,863 + PFR28_00472 0.82 -0.2
507,863 + PFR28_00472 0.82 -0.2
507,869 + PFR28_00472 0.83 -0.2
508,042 + -2.6
508,042 + -1.2
508,043 - +0.4
508,043 - -0.5
508,068 - +1.1
508,074 + +0.8
508,416 - PFR28_00473 0.77 -1.2
508,462 + PFR28_00473 0.87 +0.3
508,463 - PFR28_00473 0.87 +1.8
508,472 - PFR28_00473 0.89 +0.6
508,537 + +1.8
508,538 - +1.0
508,538 - -2.4
508,562 - -0.4
508,750 - PFR28_00474 0.16 +0.3
508,750 - PFR28_00474 0.16 -1.2
508,885 + PFR28_00474 0.28 +0.4
508,885 + PFR28_00474 0.28 -0.2
508,886 - PFR28_00474 0.28 -0.0
508,886 - PFR28_00474 0.28 -0.5
508,886 - PFR28_00474 0.28 -0.4
508,890 + PFR28_00474 0.29 +0.5
508,891 - PFR28_00474 0.29 +0.8
508,891 - PFR28_00474 0.29 +1.1
508,891 - PFR28_00474 0.29 -3.3
508,929 + PFR28_00474 0.32 +0.2
508,929 + PFR28_00474 0.32 -1.4
508,929 + PFR28_00474 0.32 +0.7
508,929 + PFR28_00474 0.32 -1.0
508,929 + PFR28_00474 0.32 +0.2
508,929 + PFR28_00474 0.32 -0.3
508,930 - PFR28_00474 0.32 +1.8
508,930 - PFR28_00474 0.32 +0.4
508,930 - PFR28_00474 0.32 +0.3
508,930 - PFR28_00474 0.32 +0.3
508,930 - PFR28_00474 0.32 +0.1
508,930 - PFR28_00474 0.32 +0.2
508,930 - PFR28_00474 0.32 +1.0
508,930 - PFR28_00474 0.32 -0.5
508,931 + PFR28_00474 0.32 -0.6
508,931 + PFR28_00474 0.32 +0.1
508,931 + PFR28_00474 0.32 -0.4
508,931 + PFR28_00474 0.32 -0.8
508,931 + PFR28_00474 0.32 +0.3
508,932 - PFR28_00474 0.33 -1.3
508,968 + PFR28_00474 0.36 +0.6
508,968 + PFR28_00474 0.36 -1.0
508,969 - PFR28_00474 0.36 +0.4
509,042 + PFR28_00474 0.42 +0.8
509,042 + PFR28_00474 0.42 -0.9
509,043 - PFR28_00474 0.42 +0.5
509,043 - PFR28_00474 0.42 -0.2
509,045 + PFR28_00474 0.43 +0.8
509,045 + PFR28_00474 0.43 +0.4
509,045 + PFR28_00474 0.43 -0.1
509,045 + PFR28_00474 0.43 +0.6
509,045 + PFR28_00474 0.43 -0.2
509,045 + PFR28_00474 0.43 +0.4
509,045 + PFR28_00474 0.43 +0.6
509,046 - PFR28_00474 0.43 -0.2
509,046 - PFR28_00474 0.43 -0.6
509,046 - PFR28_00474 0.43 -0.1
509,046 - PFR28_00474 0.43 +0.5
509,046 - PFR28_00474 0.43 +0.1
509,046 - PFR28_00474 0.43 +1.1
509,046 - PFR28_00474 0.43 -3.9
509,046 - PFR28_00474 0.43 -1.4
509,048 + PFR28_00474 0.43 -0.2
509,048 + PFR28_00474 0.43 +0.6
509,054 + PFR28_00474 0.43 -1.4
509,055 - PFR28_00474 0.44 +0.2
509,068 + PFR28_00474 0.45 +1.0
509,069 - PFR28_00474 0.45 -0.2
509,069 - PFR28_00474 0.45 +0.9
509,254 + PFR28_00474 0.61 +0.4
509,382 + PFR28_00474 0.73 -0.1
509,399 - PFR28_00474 0.74 +0.2
509,399 - PFR28_00474 0.74 +1.4

Or see this region's nucleotide sequence