Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00341 and PFR28_00342 are separated by 373 nucleotides PFR28_00342 and PFR28_00343 are separated by 158 nucleotides
PFR28_00341: PFR28_00341 - Glucans biosynthesis protein D, at 372,283 to 373,908
_00341
PFR28_00342: PFR28_00342 - hypothetical protein, at 374,282 to 374,467
_00342
PFR28_00343: PFR28_00343 - Gamma-aminobutyraldehyde dehydrogenase, at 374,626 to 376,050
_00343
Position (kb) 374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 373.313 kb on + strand, within PFR28_00341 at 373.314 kb on - strand, within PFR28_00341 at 373.314 kb on - strand, within PFR28_00341 at 373.318 kb on - strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.499 kb on + strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.722 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.862 kb on + strand at 373.863 kb on - strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.900 kb on - strand at 373.900 kb on - strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.920 kb on + strand at 373.921 kb on - strand at 373.964 kb on - strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.060 kb on + strand at 374.060 kb on + strand at 374.061 kb on - strand at 374.108 kb on + strand at 374.114 kb on + strand at 374.114 kb on + strand at 374.114 kb on + strand at 374.115 kb on - strand at 374.151 kb on + strand at 374.152 kb on - strand at 374.155 kb on + strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.160 kb on + strand at 374.179 kb on + strand at 374.180 kb on - strand at 374.192 kb on + strand at 374.192 kb on + strand at 374.192 kb on + strand at 374.199 kb on - strand at 374.252 kb on - strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.429 kb on + strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.465 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.506 kb on - strand at 374.506 kb on - strand at 374.653 kb on + strand at 374.653 kb on + strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.661 kb on - strand at 374.661 kb on - strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.752 kb on - strand at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.772 kb on - strand, within PFR28_00343 at 374.821 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.126 kb on - strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 373,313 + PFR28_00341 0.63 +0.0 373,314 - PFR28_00341 0.63 +0.3 373,314 - PFR28_00341 0.63 +0.8 373,318 - PFR28_00341 0.64 -0.7 373,379 + PFR28_00341 0.67 +0.4 373,379 + PFR28_00341 0.67 +2.4 373,379 + PFR28_00341 0.67 -0.0 373,379 + PFR28_00341 0.67 +1.5 373,379 + PFR28_00341 0.67 +0.0 373,380 - PFR28_00341 0.67 -1.1 373,380 - PFR28_00341 0.67 -0.1 373,380 - PFR28_00341 0.67 +0.2 373,499 + PFR28_00341 0.75 +0.4 373,500 - PFR28_00341 0.75 +0.8 373,500 - PFR28_00341 0.75 -0.8 373,500 - PFR28_00341 0.75 +0.0 373,722 + PFR28_00341 0.88 +1.4 373,730 + PFR28_00341 0.89 -1.0 373,730 + PFR28_00341 0.89 -3.8 373,730 + PFR28_00341 0.89 -0.1 373,730 + PFR28_00341 0.89 +1.1 373,730 + PFR28_00341 0.89 -0.5 373,730 + PFR28_00341 0.89 +0.2 373,730 + PFR28_00341 0.89 +0.7 373,730 + PFR28_00341 0.89 -0.1 373,730 + PFR28_00341 0.89 -0.5 373,730 + PFR28_00341 0.89 -0.1 373,730 + PFR28_00341 0.89 +0.6 373,730 + PFR28_00341 0.89 +1.5 373,730 + PFR28_00341 0.89 -0.3 373,731 - PFR28_00341 0.89 -0.2 373,731 - PFR28_00341 0.89 -1.6 373,731 - PFR28_00341 0.89 -0.3 373,731 - PFR28_00341 0.89 +0.3 373,731 - PFR28_00341 0.89 +0.2 373,731 - PFR28_00341 0.89 +1.3 373,731 - PFR28_00341 0.89 +1.3 373,731 - PFR28_00341 0.89 +0.3 373,731 - PFR28_00341 0.89 +0.3 373,734 + PFR28_00341 0.89 +0.5 373,734 + PFR28_00341 0.89 -0.2 373,734 + PFR28_00341 0.89 -0.3 373,734 + PFR28_00341 0.89 -1.2 373,734 + PFR28_00341 0.89 -0.6 373,734 + PFR28_00341 0.89 +0.3 373,734 + PFR28_00341 0.89 -0.7 373,734 + PFR28_00341 0.89 -0.8 373,734 + PFR28_00341 0.89 +0.7 373,734 + PFR28_00341 0.89 +0.0 373,734 + PFR28_00341 0.89 -0.3 373,734 + PFR28_00341 0.89 -0.2 373,735 - PFR28_00341 0.89 -0.6 373,735 - PFR28_00341 0.89 -0.3 373,735 - PFR28_00341 0.89 -1.0 373,735 - PFR28_00341 0.89 -2.0 373,735 - PFR28_00341 0.89 +0.2 373,735 - PFR28_00341 0.89 +0.9 373,735 - PFR28_00341 0.89 +0.6 373,735 - PFR28_00341 0.89 +0.8 373,735 - PFR28_00341 0.89 +0.4 373,735 - PFR28_00341 0.89 +1.2 373,735 - PFR28_00341 0.89 -0.8 373,735 - PFR28_00341 0.89 -0.5 373,862 + +0.6 373,863 - +0.4 373,899 + +1.4 373,899 + +0.0 373,899 + -1.8 373,899 + -0.5 373,900 - +0.4 373,900 - +1.0 373,908 + -0.6 373,908 + -0.4 373,908 + +0.1 373,908 + -0.8 373,908 + -0.9 373,908 + -2.2 373,909 - +0.3 373,909 - +0.6 373,909 - +2.4 373,909 - +0.4 373,912 + -0.0 373,912 + -0.3 373,912 + -0.2 373,912 + -1.2 373,912 + +0.4 373,912 + -1.4 373,912 + +1.3 373,912 + +0.0 373,912 + -1.6 373,912 + +0.3 373,912 + -2.1 373,912 + +1.8 373,912 + +0.5 373,912 + +0.2 373,912 + -0.1 373,912 + +0.6 373,913 - -0.6 373,913 - +0.1 373,913 - +0.2 373,913 - +2.0 373,913 - -0.6 373,913 - +0.7 373,913 - +0.5 373,920 + -0.1 373,921 - +0.3 373,964 - +0.3 374,004 + +0.7 374,004 + -2.4 374,004 + +1.2 374,004 + -0.2 374,005 - +1.8 374,005 - -0.2 374,005 - +0.1 374,005 - +0.5 374,060 + +0.6 374,060 + -2.7 374,061 - -0.1 374,108 + -0.2 374,114 + -1.0 374,114 + +0.8 374,114 + +2.4 374,115 - -0.2 374,151 + -0.2 374,152 - -0.1 374,155 + +0.6 374,156 - -0.7 374,156 - +1.1 374,156 - -0.1 374,156 - +0.5 374,160 + +0.6 374,179 + +0.4 374,180 - -0.5 374,192 + +0.3 374,192 + -0.4 374,192 + -2.6 374,199 - +0.7 374,252 - -1.3 374,266 + -1.0 374,266 + +0.5 374,266 + -2.0 374,266 + -0.8 374,266 + +0.6 374,267 - -1.6 374,267 - -0.2 374,267 - -0.8 374,267 - -0.5 374,267 - -0.0 374,267 - +0.4 374,267 - +0.4 374,429 + PFR28_00342 0.79 +0.8 374,430 - PFR28_00342 0.80 +0.7 374,430 - PFR28_00342 0.80 +0.7 374,430 - PFR28_00342 0.80 +1.8 374,430 - PFR28_00342 0.80 +0.8 374,430 - PFR28_00342 0.80 -0.2 374,430 - PFR28_00342 0.80 -0.0 374,465 + -0.4 374,503 + -1.5 374,503 + -0.1 374,503 + +1.5 374,503 + +0.8 374,503 + -0.8 374,503 + +0.5 374,503 + +0.2 374,503 + -0.0 374,503 + +0.8 374,504 - -0.2 374,504 - +0.7 374,504 - +1.6 374,504 - -0.5 374,504 - +2.8 374,504 - -0.1 374,506 - -0.1 374,506 - +0.1 374,653 + -0.6 374,653 + +0.4 374,654 - +0.2 374,654 - +0.3 374,654 - -0.0 374,654 - +0.2 374,660 + -0.5 374,660 + -0.8 374,660 + +0.3 374,660 + -0.6 374,661 - +1.7 374,661 - -1.6 374,675 + +1.4 374,675 + +1.1 374,675 + -1.0 374,675 + -0.1 374,675 + +2.8 374,675 + +0.2 374,676 - +0.6 374,676 - +0.2 374,676 - +0.1 374,676 - +1.0 374,676 - -0.9 374,676 - +0.2 374,676 - -0.6 374,676 - +0.5 374,676 - -0.0 374,676 - -0.3 374,676 - -0.3 374,752 - -0.9 374,771 + PFR28_00343 0.10 +3.4 374,771 + PFR28_00343 0.10 +1.4 374,771 + PFR28_00343 0.10 +0.3 374,771 + PFR28_00343 0.10 -0.0 374,772 - PFR28_00343 0.10 -2.1 374,821 + PFR28_00343 0.14 +1.0 375,125 + PFR28_00343 0.35 +0.5 375,125 + PFR28_00343 0.35 +1.3 375,125 + PFR28_00343 0.35 -0.7 375,126 - PFR28_00343 0.35 +0.7 375,191 + PFR28_00343 0.40 -0.1 375,191 + PFR28_00343 0.40 -2.7 375,191 + PFR28_00343 0.40 +1.3 375,191 + PFR28_00343 0.40 -0.0 375,191 + PFR28_00343 0.40 +0.1 375,191 + PFR28_00343 0.40 -1.0 375,192 - PFR28_00343 0.40 -0.5 375,192 - PFR28_00343 0.40 +0.8 375,192 - PFR28_00343 0.40 -0.4 375,192 - PFR28_00343 0.40 -0.2 375,192 - PFR28_00343 0.40 +0.6 375,192 - PFR28_00343 0.40 +0.7 375,230 + PFR28_00343 0.42 +2.0 375,230 + PFR28_00343 0.42 +0.1 375,230 + PFR28_00343 0.42 +0.7 375,230 + PFR28_00343 0.42 +0.3 375,230 + PFR28_00343 0.42 +2.9 375,231 - PFR28_00343 0.42 +0.9 375,231 - PFR28_00343 0.42 +0.6 375,231 - PFR28_00343 0.42 +0.2 375,231 - PFR28_00343 0.42 -0.4
Or see this region's nucleotide sequence