Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00124 and PFR28_00125 overlap by 1 nucleotides PFR28_00125 and PFR28_00126 are separated by 10 nucleotides PFR28_00126 and PFR28_00127 are separated by 10 nucleotides
PFR28_00124: PFR28_00124 - Glutathione import ATP-binding protein GsiA, at 144,367 to 145,347
_00124
PFR28_00125: PFR28_00125 - Dipeptide transport ATP-binding protein DppD, at 145,347 to 146,315
_00125
PFR28_00126: PFR28_00126 - Dipeptide transport system permease protein DppC, at 146,326 to 147,237
_00126
PFR28_00127: PFR28_00127 - Dipeptide transport system permease protein DppB, at 147,248 to 148,258
_00127
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.332 kb on + strand at 145.332 kb on + strand at 145.337 kb on - strand at 145.337 kb on - strand at 145.337 kb on - strand at 145.337 kb on - strand at 145.372 kb on + strand at 145.433 kb on + strand at 145.433 kb on + strand at 145.434 kb on - strand at 145.445 kb on - strand, within PFR28_00125 at 145.445 kb on - strand, within PFR28_00125 at 145.636 kb on + strand, within PFR28_00125 at 145.636 kb on + strand, within PFR28_00125 at 145.637 kb on - strand, within PFR28_00125 at 145.637 kb on - strand, within PFR28_00125 at 145.637 kb on - strand, within PFR28_00125 at 145.637 kb on - strand, within PFR28_00125 at 145.677 kb on + strand, within PFR28_00125 at 145.678 kb on - strand, within PFR28_00125 at 145.688 kb on + strand, within PFR28_00125 at 145.870 kb on + strand, within PFR28_00125 at 145.871 kb on - strand, within PFR28_00125 at 146.001 kb on - strand, within PFR28_00125 at 146.001 kb on - strand, within PFR28_00125 at 146.002 kb on + strand, within PFR28_00125 at 146.002 kb on + strand, within PFR28_00125 at 146.003 kb on - strand, within PFR28_00125 at 146.003 kb on - strand, within PFR28_00125 at 146.003 kb on - strand, within PFR28_00125 at 146.003 kb on - strand, within PFR28_00125 at 146.003 kb on - strand, within PFR28_00125 at 146.304 kb on + strand at 146.304 kb on + strand at 146.305 kb on - strand at 146.305 kb on - strand at 146.453 kb on + strand, within PFR28_00126 at 146.454 kb on - strand, within PFR28_00126 at 146.454 kb on - strand, within PFR28_00126 at 146.454 kb on - strand, within PFR28_00126 at 146.661 kb on - strand, within PFR28_00126 at 146.661 kb on - strand, within PFR28_00126 at 146.661 kb on - strand, within PFR28_00126 at 146.709 kb on - strand, within PFR28_00126 at 147.180 kb on - strand at 147.222 kb on + strand at 147.222 kb on + strand at 147.223 kb on - strand at 147.223 kb on - strand at 147.223 kb on - strand at 147.223 kb on - strand at 147.232 kb on - strand at 147.515 kb on + strand, within PFR28_00127 at 147.516 kb on - strand, within PFR28_00127 at 147.561 kb on + strand, within PFR28_00127 at 147.561 kb on + strand, within PFR28_00127 at 147.561 kb on + strand, within PFR28_00127 at 147.562 kb on - strand, within PFR28_00127 at 147.741 kb on + strand, within PFR28_00127 at 147.741 kb on + strand, within PFR28_00127 at 147.995 kb on + strand, within PFR28_00127 at 148.053 kb on + strand, within PFR28_00127 at 148.053 kb on + strand, within PFR28_00127 at 148.054 kb on - strand, within PFR28_00127 at 148.062 kb on + strand, within PFR28_00127 at 148.071 kb on + strand, within PFR28_00127 at 148.071 kb on + strand, within PFR28_00127 at 148.072 kb on - strand, within PFR28_00127 at 148.227 kb on - strand at 148.227 kb on - strand at 148.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 145,332 + -0.1 145,332 + +0.7 145,337 - +1.8 145,337 - +0.0 145,337 - +0.2 145,337 - -0.8 145,372 + -1.4 145,433 + -1.2 145,433 + +0.8 145,434 - +1.5 145,445 - PFR28_00125 0.10 -0.8 145,445 - PFR28_00125 0.10 +0.4 145,636 + PFR28_00125 0.30 -1.0 145,636 + PFR28_00125 0.30 -0.5 145,637 - PFR28_00125 0.30 -2.8 145,637 - PFR28_00125 0.30 -1.8 145,637 - PFR28_00125 0.30 +0.8 145,637 - PFR28_00125 0.30 -0.1 145,677 + PFR28_00125 0.34 -0.5 145,678 - PFR28_00125 0.34 -1.6 145,688 + PFR28_00125 0.35 -0.7 145,870 + PFR28_00125 0.54 +0.5 145,871 - PFR28_00125 0.54 +0.8 146,001 - PFR28_00125 0.67 +0.3 146,001 - PFR28_00125 0.67 -1.3 146,002 + PFR28_00125 0.68 +1.0 146,002 + PFR28_00125 0.68 -0.3 146,003 - PFR28_00125 0.68 -0.7 146,003 - PFR28_00125 0.68 -0.0 146,003 - PFR28_00125 0.68 +0.0 146,003 - PFR28_00125 0.68 -0.6 146,003 - PFR28_00125 0.68 -1.3 146,304 + -2.0 146,304 + -1.4 146,305 - -1.3 146,305 - +0.8 146,453 + PFR28_00126 0.14 -1.1 146,454 - PFR28_00126 0.14 -1.4 146,454 - PFR28_00126 0.14 +0.8 146,454 - PFR28_00126 0.14 +2.2 146,661 - PFR28_00126 0.37 -1.7 146,661 - PFR28_00126 0.37 +0.4 146,661 - PFR28_00126 0.37 +1.8 146,709 - PFR28_00126 0.42 +0.6 147,180 - -0.5 147,222 + +0.2 147,222 + -1.4 147,223 - -0.7 147,223 - +0.2 147,223 - -0.6 147,223 - +1.8 147,232 - +0.6 147,515 + PFR28_00127 0.26 +0.1 147,516 - PFR28_00127 0.27 +1.3 147,561 + PFR28_00127 0.31 -1.2 147,561 + PFR28_00127 0.31 -0.8 147,561 + PFR28_00127 0.31 +1.9 147,562 - PFR28_00127 0.31 -0.2 147,741 + PFR28_00127 0.49 -0.4 147,741 + PFR28_00127 0.49 -0.5 147,995 + PFR28_00127 0.74 -1.2 148,053 + PFR28_00127 0.80 +0.5 148,053 + PFR28_00127 0.80 +1.2 148,054 - PFR28_00127 0.80 +0.6 148,062 + PFR28_00127 0.81 -2.4 148,071 + PFR28_00127 0.81 -0.2 148,071 + PFR28_00127 0.81 +0.6 148,072 - PFR28_00127 0.82 -0.1 148,227 - -0.3 148,227 - -1.8 148,227 - +0.4
Or see this region's nucleotide sequence