Experiment: L-Carnitine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00053 and PFR28_00054 are separated by 171 nucleotides PFR28_00054 and PFR28_00056 are separated by 596 nucleotides
PFR28_00053: PFR28_00053 - HTH-type transcriptional regulator GltC, at 63,789 to 64,706
_00053
PFR28_00054: PFR28_00054 - hypothetical protein, at 64,878 to 65,231
_00054
PFR28_00056: PFR28_00056 - hypothetical protein, at 65,828 to 65,935
_00056
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.970 kb on + strand, within PFR28_00053 at 63.970 kb on + strand, within PFR28_00053 at 63.970 kb on + strand, within PFR28_00053 at 63.971 kb on - strand, within PFR28_00053 at 64.002 kb on + strand, within PFR28_00053 at 64.003 kb on - strand, within PFR28_00053 at 64.049 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.116 kb on + strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.117 kb on - strand, within PFR28_00053 at 64.152 kb on + strand, within PFR28_00053 at 64.152 kb on + strand, within PFR28_00053 at 64.210 kb on + strand, within PFR28_00053 at 64.210 kb on + strand, within PFR28_00053 at 64.210 kb on + strand, within PFR28_00053 at 64.402 kb on + strand, within PFR28_00053 at 64.466 kb on + strand, within PFR28_00053 at 64.466 kb on + strand, within PFR28_00053 at 64.466 kb on + strand, within PFR28_00053 at 64.466 kb on + strand, within PFR28_00053 at 64.467 kb on - strand, within PFR28_00053 at 64.467 kb on - strand, within PFR28_00053 at 64.467 kb on - strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.470 kb on + strand, within PFR28_00053 at 64.471 kb on - strand, within PFR28_00053 at 64.471 kb on - strand, within PFR28_00053 at 64.471 kb on - strand, within PFR28_00053 at 64.471 kb on - strand, within PFR28_00053 at 64.471 kb on - strand, within PFR28_00053 at 64.487 kb on + strand, within PFR28_00053 at 64.487 kb on + strand, within PFR28_00053 at 64.487 kb on + strand, within PFR28_00053 at 64.487 kb on + strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.488 kb on - strand, within PFR28_00053 at 64.634 kb on + strand at 64.719 kb on - strand at 64.719 kb on - strand at 64.719 kb on - strand at 64.771 kb on + strand at 64.772 kb on - strand at 64.772 kb on - strand at 64.773 kb on + strand at 64.773 kb on + strand at 64.773 kb on + strand at 64.773 kb on + strand at 64.789 kb on + strand at 64.789 kb on + strand at 64.790 kb on - strand at 64.790 kb on - strand at 64.827 kb on + strand at 64.865 kb on + strand at 64.867 kb on + strand at 64.867 kb on + strand at 64.868 kb on - strand at 64.868 kb on - strand at 65.132 kb on - strand, within PFR28_00054 at 65.283 kb on + strand at 65.283 kb on + strand at 65.283 kb on + strand at 65.284 kb on - strand at 65.297 kb on + strand at 65.298 kb on - strand at 65.320 kb on + strand at 65.381 kb on + strand at 65.381 kb on + strand at 65.381 kb on + strand at 65.381 kb on + strand at 65.381 kb on + strand at 65.381 kb on + strand at 65.382 kb on - strand at 65.387 kb on + strand at 65.387 kb on + strand at 65.387 kb on + strand at 65.387 kb on + strand at 65.388 kb on - strand at 65.399 kb on + strand at 65.422 kb on + strand at 65.475 kb on + strand at 65.517 kb on + strand at 65.517 kb on + strand at 65.523 kb on + strand at 65.545 kb on + strand at 65.545 kb on + strand at 65.546 kb on - strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.581 kb on + strand at 65.582 kb on - strand at 65.582 kb on - strand at 65.604 kb on - strand at 65.644 kb on - strand at 65.654 kb on + strand at 65.654 kb on + strand at 65.655 kb on - strand at 65.665 kb on + strand at 65.665 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.720 kb on + strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.724 kb on + strand at 65.725 kb on - strand at 65.725 kb on - strand at 65.725 kb on - strand at 65.725 kb on - strand at 65.735 kb on + strand at 65.735 kb on + strand at 65.735 kb on + strand at 65.735 kb on + strand at 65.736 kb on - strand at 65.818 kb on + strand at 65.818 kb on + strand at 65.819 kb on - strand at 65.819 kb on - strand at 65.819 kb on - strand at 65.819 kb on - strand at 65.872 kb on + strand, within PFR28_00056 at 65.872 kb on + strand, within PFR28_00056 at 65.872 kb on + strand, within PFR28_00056 at 65.872 kb on + strand, within PFR28_00056 at 65.873 kb on - strand, within PFR28_00056 at 65.873 kb on - strand, within PFR28_00056 at 65.910 kb on + strand, within PFR28_00056 at 65.910 kb on + strand, within PFR28_00056 at 65.954 kb on - strand at 65.954 kb on - strand at 65.954 kb on - strand at 65.969 kb on + strand at 65.969 kb on + strand at 65.969 kb on + strand at 65.969 kb on + strand at 65.969 kb on + strand at 65.969 kb on + strand at 65.970 kb on - strand at 65.970 kb on - strand at 65.970 kb on - strand at 65.970 kb on - strand at 65.970 kb on - strand at 65.973 kb on - strand at 66.045 kb on - strand at 66.090 kb on + strand at 66.091 kb on - strand at 66.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Carnitine 10 mM (C) remove 63,970 + PFR28_00053 0.20 -0.6 63,970 + PFR28_00053 0.20 -2.4 63,970 + PFR28_00053 0.20 +0.3 63,971 - PFR28_00053 0.20 -1.4 64,002 + PFR28_00053 0.23 +0.3 64,003 - PFR28_00053 0.23 +0.3 64,049 + PFR28_00053 0.28 +0.6 64,116 + PFR28_00053 0.36 -1.4 64,116 + PFR28_00053 0.36 -0.9 64,116 + PFR28_00053 0.36 -0.4 64,116 + PFR28_00053 0.36 -0.1 64,116 + PFR28_00053 0.36 -1.0 64,116 + PFR28_00053 0.36 +0.6 64,116 + PFR28_00053 0.36 -1.6 64,116 + PFR28_00053 0.36 +0.8 64,116 + PFR28_00053 0.36 +0.7 64,117 - PFR28_00053 0.36 -0.1 64,117 - PFR28_00053 0.36 -0.5 64,117 - PFR28_00053 0.36 -0.6 64,117 - PFR28_00053 0.36 +1.0 64,117 - PFR28_00053 0.36 -0.7 64,117 - PFR28_00053 0.36 -0.2 64,152 + PFR28_00053 0.40 +2.3 64,152 + PFR28_00053 0.40 +0.5 64,210 + PFR28_00053 0.46 +0.3 64,210 + PFR28_00053 0.46 -0.3 64,210 + PFR28_00053 0.46 +0.4 64,402 + PFR28_00053 0.67 -0.8 64,466 + PFR28_00053 0.74 +0.3 64,466 + PFR28_00053 0.74 -1.3 64,466 + PFR28_00053 0.74 -0.9 64,466 + PFR28_00053 0.74 +0.8 64,467 - PFR28_00053 0.74 +0.7 64,467 - PFR28_00053 0.74 -1.2 64,467 - PFR28_00053 0.74 +1.1 64,470 + PFR28_00053 0.74 -1.4 64,470 + PFR28_00053 0.74 +0.0 64,470 + PFR28_00053 0.74 -0.2 64,470 + PFR28_00053 0.74 -1.2 64,470 + PFR28_00053 0.74 +1.1 64,470 + PFR28_00053 0.74 -0.8 64,470 + PFR28_00053 0.74 -0.5 64,470 + PFR28_00053 0.74 -0.7 64,471 - PFR28_00053 0.74 -0.2 64,471 - PFR28_00053 0.74 +0.4 64,471 - PFR28_00053 0.74 -0.8 64,471 - PFR28_00053 0.74 +0.4 64,471 - PFR28_00053 0.74 +1.5 64,487 + PFR28_00053 0.76 -0.1 64,487 + PFR28_00053 0.76 +1.7 64,487 + PFR28_00053 0.76 -1.5 64,487 + PFR28_00053 0.76 +0.5 64,488 - PFR28_00053 0.76 +0.8 64,488 - PFR28_00053 0.76 -0.7 64,488 - PFR28_00053 0.76 +2.6 64,488 - PFR28_00053 0.76 -0.7 64,488 - PFR28_00053 0.76 +0.8 64,488 - PFR28_00053 0.76 +0.9 64,488 - PFR28_00053 0.76 -0.0 64,634 + +0.0 64,719 - -0.1 64,719 - +1.7 64,719 - -1.7 64,771 + +0.2 64,772 - +1.8 64,772 - +0.9 64,773 + +0.3 64,773 + +0.9 64,773 + -1.0 64,773 + +0.6 64,789 + +0.3 64,789 + -1.5 64,790 - -0.8 64,790 - +0.2 64,827 + +1.1 64,865 + -0.6 64,867 + -0.5 64,867 + +0.6 64,868 - +1.0 64,868 - +0.9 65,132 - PFR28_00054 0.72 +0.6 65,283 + -2.0 65,283 + -0.5 65,283 + +0.6 65,284 - +1.5 65,297 + +0.6 65,298 - -0.0 65,320 + -0.1 65,381 + -0.4 65,381 + +0.6 65,381 + -0.2 65,381 + +0.3 65,381 + -0.1 65,381 + -0.7 65,382 - -1.1 65,387 + -1.0 65,387 + -1.0 65,387 + +1.0 65,387 + +1.3 65,388 - +0.4 65,399 + -0.9 65,422 + -0.2 65,475 + +0.1 65,517 + -0.2 65,517 + -1.6 65,523 + +1.4 65,545 + +1.6 65,545 + +0.2 65,546 - -0.3 65,581 + -0.0 65,581 + +0.2 65,581 + -0.8 65,581 + +0.1 65,581 + -0.7 65,581 + +0.7 65,581 + -0.0 65,581 + -1.0 65,582 - -0.0 65,582 - -0.7 65,604 - -0.8 65,644 - -0.0 65,654 + +1.0 65,654 + -0.4 65,655 - -1.8 65,665 + +0.6 65,665 + +0.4 65,720 + -0.8 65,720 + -1.8 65,720 + -0.0 65,720 + -0.2 65,720 + -0.4 65,720 + +1.3 65,720 + -0.2 65,720 + -0.1 65,720 + -2.0 65,720 + -1.0 65,720 + +0.4 65,720 + +0.8 65,720 + -0.1 65,720 + -0.4 65,720 + -0.1 65,721 - -1.5 65,721 - +0.5 65,721 - +0.6 65,721 - -0.3 65,721 - -0.4 65,721 - +0.1 65,721 - -1.1 65,721 - -0.0 65,721 - -0.3 65,721 - -0.6 65,721 - -1.2 65,721 - -0.6 65,721 - -0.6 65,724 + -1.2 65,724 + +0.3 65,724 + +0.9 65,724 + -0.2 65,724 + -1.4 65,724 + -0.2 65,724 + -0.2 65,724 + +0.2 65,724 + +0.6 65,724 + -0.6 65,724 + -0.5 65,724 + -0.4 65,725 - +0.3 65,725 - +0.1 65,725 - +1.2 65,725 - -0.5 65,735 + -0.5 65,735 + -0.8 65,735 + +2.3 65,735 + -0.3 65,736 - -0.9 65,818 + -0.2 65,818 + +0.1 65,819 - +0.7 65,819 - -0.1 65,819 - +1.0 65,819 - +0.8 65,872 + PFR28_00056 0.41 +0.0 65,872 + PFR28_00056 0.41 +2.7 65,872 + PFR28_00056 0.41 -0.2 65,872 + PFR28_00056 0.41 +1.2 65,873 - PFR28_00056 0.42 +0.4 65,873 - PFR28_00056 0.42 +1.0 65,910 + PFR28_00056 0.76 +0.2 65,910 + PFR28_00056 0.76 +1.5 65,954 - -0.1 65,954 - -1.6 65,954 - -1.0 65,969 + +0.8 65,969 + -0.8 65,969 + -0.1 65,969 + -0.1 65,969 + -1.7 65,969 + +0.2 65,970 - -0.0 65,970 - -1.6 65,970 - +0.0 65,970 - +0.3 65,970 - +0.3 65,973 - +0.3 66,045 - +0.6 66,090 + +1.2 66,091 - +0.1 66,144 + -0.1
Or see this region's nucleotide sequence