Strain Fitness in Pseudomonas sp. RS175 around PFR28_04802

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04801 and PFR28_04802 are separated by 1 nucleotidesPFR28_04802 and PFR28_04803 are separated by 32 nucleotidesPFR28_04803 and PFR28_04804 are separated by 120 nucleotides PFR28_04801: PFR28_04801 - hypothetical protein, at 5,481,295 to 5,482,614 _04801 PFR28_04802: PFR28_04802 - hypothetical protein, at 5,482,616 to 5,484,721 _04802 PFR28_04803: PFR28_04803 - hypothetical protein, at 5,484,754 to 5,485,245 _04803 PFR28_04804: PFR28_04804 - hypothetical protein, at 5,485,366 to 5,485,677 _04804 Position (kb) 5482 5483 5484 5485Strain fitness (log2 ratio) -1 0 1 2 3at 5481.731 kb on + strand, within PFR28_04801at 5481.731 kb on + strand, within PFR28_04801at 5481.731 kb on + strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.754 kb on - strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.881 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.564 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.605 kb on - strandat 5482.605 kb on - strandat 5482.728 kb on - strandat 5482.831 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5483.066 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.382 kb on + strand, within PFR28_04802at 5483.382 kb on + strand, within PFR28_04802at 5483.437 kb on + strand, within PFR28_04802at 5483.519 kb on + strand, within PFR28_04802at 5483.519 kb on + strand, within PFR28_04802at 5483.729 kb on + strand, within PFR28_04802at 5483.729 kb on + strand, within PFR28_04802at 5483.729 kb on + strand, within PFR28_04802at 5483.730 kb on - strand, within PFR28_04802at 5483.730 kb on - strand, within PFR28_04802at 5483.730 kb on - strand, within PFR28_04802at 5483.730 kb on - strand, within PFR28_04802at 5483.795 kb on - strand, within PFR28_04802at 5484.200 kb on + strand, within PFR28_04802at 5484.356 kb on + strand, within PFR28_04802at 5484.357 kb on - strand, within PFR28_04802at 5484.572 kb on + strandat 5484.573 kb on - strandat 5484.615 kb on + strandat 5484.616 kb on - strandat 5484.616 kb on - strandat 5484.616 kb on - strandat 5484.720 kb on - strandat 5484.720 kb on - strandat 5484.765 kb on - strandat 5484.785 kb on + strandat 5484.786 kb on - strandat 5484.818 kb on + strand, within PFR28_04803at 5484.819 kb on - strand, within PFR28_04803at 5484.829 kb on + strand, within PFR28_04803at 5484.829 kb on + strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.912 kb on - strand, within PFR28_04803at 5484.912 kb on - strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5485.030 kb on + strand, within PFR28_04803at 5485.030 kb on + strand, within PFR28_04803at 5485.031 kb on - strand, within PFR28_04803at 5485.067 kb on - strand, within PFR28_04803at 5485.067 kb on - strand, within PFR28_04803at 5485.147 kb on - strand, within PFR28_04803at 5485.147 kb on - strand, within PFR28_04803at 5485.169 kb on - strand, within PFR28_04803at 5485.169 kb on - strand, within PFR28_04803at 5485.388 kb on + strandat 5485.388 kb on + strandat 5485.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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5,481,731 + PFR28_04801 0.33 -0.3
5,481,731 + PFR28_04801 0.33 +1.6
5,481,731 + PFR28_04801 0.33 -0.3
5,481,732 - PFR28_04801 0.33 +0.4
5,481,732 - PFR28_04801 0.33 +1.9
5,481,732 - PFR28_04801 0.33 +1.6
5,481,732 - PFR28_04801 0.33 +0.2
5,481,732 - PFR28_04801 0.33 +0.2
5,481,732 - PFR28_04801 0.33 +0.3
5,481,732 - PFR28_04801 0.33 +0.1
5,481,732 - PFR28_04801 0.33 +0.3
5,481,754 - PFR28_04801 0.35 +0.2
5,481,757 + PFR28_04801 0.35 +1.3
5,481,757 + PFR28_04801 0.35 +0.2
5,481,757 + PFR28_04801 0.35 +0.6
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 +0.7
5,481,757 + PFR28_04801 0.35 -0.0
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 -0.4
5,481,758 - PFR28_04801 0.35 +0.1
5,481,758 - PFR28_04801 0.35 +0.2
5,481,758 - PFR28_04801 0.35 +1.7
5,481,758 - PFR28_04801 0.35 +0.5
5,481,758 - PFR28_04801 0.35 +0.5
5,481,758 - PFR28_04801 0.35 +0.2
5,481,881 + PFR28_04801 0.44 +2.3
5,482,174 + PFR28_04801 0.67 +3.1
5,482,174 + PFR28_04801 0.67 -0.4
5,482,174 + PFR28_04801 0.67 -0.5
5,482,175 - PFR28_04801 0.67 -1.1
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 -0.3
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 +0.0
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 +1.1
5,482,564 + +0.1
5,482,604 + +0.3
5,482,604 + +0.4
5,482,604 + +0.7
5,482,604 + +2.2
5,482,604 + +0.8
5,482,604 + +1.4
5,482,604 + -0.3
5,482,605 - +0.5
5,482,605 - +0.9
5,482,728 - -0.2
5,482,831 + PFR28_04802 0.10 +0.7
5,482,916 + PFR28_04802 0.14 +0.4
5,482,916 + PFR28_04802 0.14 +0.5
5,482,916 + PFR28_04802 0.14 -0.8
5,482,916 + PFR28_04802 0.14 +1.0
5,482,916 + PFR28_04802 0.14 +0.6
5,482,916 + PFR28_04802 0.14 +1.2
5,482,916 + PFR28_04802 0.14 +0.3
5,482,916 + PFR28_04802 0.14 -0.1
5,482,917 - PFR28_04802 0.14 -0.7
5,482,917 - PFR28_04802 0.14 +0.5
5,482,917 - PFR28_04802 0.14 +0.5
5,482,917 - PFR28_04802 0.14 +1.3
5,482,917 - PFR28_04802 0.14 +0.5
5,482,974 - PFR28_04802 0.17 +0.2
5,482,974 - PFR28_04802 0.17 +1.2
5,482,974 - PFR28_04802 0.17 -0.5
5,482,974 - PFR28_04802 0.17 +0.8
5,483,066 + PFR28_04802 0.21 +2.4
5,483,297 + PFR28_04802 0.32 +1.2
5,483,297 + PFR28_04802 0.32 +0.1
5,483,297 + PFR28_04802 0.32 +0.4
5,483,297 + PFR28_04802 0.32 +1.4
5,483,297 + PFR28_04802 0.32 +0.5
5,483,297 + PFR28_04802 0.32 +0.5
5,483,298 - PFR28_04802 0.32 +0.5
5,483,298 - PFR28_04802 0.32 +0.6
5,483,298 - PFR28_04802 0.32 +1.0
5,483,298 - PFR28_04802 0.32 +0.6
5,483,298 - PFR28_04802 0.32 +0.4
5,483,298 - PFR28_04802 0.32 -0.6
5,483,382 + PFR28_04802 0.36 +0.2
5,483,382 + PFR28_04802 0.36 +0.4
5,483,437 + PFR28_04802 0.39 +0.9
5,483,519 + PFR28_04802 0.43 +2.8
5,483,519 + PFR28_04802 0.43 -0.8
5,483,729 + PFR28_04802 0.53 +0.6
5,483,729 + PFR28_04802 0.53 +0.0
5,483,729 + PFR28_04802 0.53 +0.8
5,483,730 - PFR28_04802 0.53 +0.1
5,483,730 - PFR28_04802 0.53 +0.4
5,483,730 - PFR28_04802 0.53 -1.4
5,483,730 - PFR28_04802 0.53 +0.5
5,483,795 - PFR28_04802 0.56 -0.1
5,484,200 + PFR28_04802 0.75 +0.7
5,484,356 + PFR28_04802 0.83 +0.4
5,484,357 - PFR28_04802 0.83 +1.1
5,484,572 + -0.1
5,484,573 - +0.2
5,484,615 + -0.0
5,484,616 - +0.9
5,484,616 - +0.5
5,484,616 - +0.5
5,484,720 - -0.4
5,484,720 - +0.1
5,484,765 - -1.0
5,484,785 + +0.8
5,484,786 - +0.4
5,484,818 + PFR28_04803 0.13 -0.1
5,484,819 - PFR28_04803 0.13 -0.5
5,484,829 + PFR28_04803 0.15 +0.7
5,484,829 + PFR28_04803 0.15 +0.5
5,484,830 - PFR28_04803 0.15 +0.5
5,484,830 - PFR28_04803 0.15 -0.4
5,484,830 - PFR28_04803 0.15 +0.1
5,484,904 + PFR28_04803 0.30 -0.0
5,484,904 + PFR28_04803 0.30 +0.7
5,484,904 + PFR28_04803 0.30 +0.3
5,484,905 - PFR28_04803 0.31 -0.0
5,484,905 - PFR28_04803 0.31 +0.9
5,484,905 - PFR28_04803 0.31 -1.2
5,484,911 + PFR28_04803 0.32 -0.1
5,484,911 + PFR28_04803 0.32 +0.5
5,484,911 + PFR28_04803 0.32 -1.1
5,484,912 - PFR28_04803 0.32 -0.4
5,484,912 - PFR28_04803 0.32 +0.1
5,484,955 + PFR28_04803 0.41 +0.5
5,484,955 + PFR28_04803 0.41 +0.4
5,484,955 + PFR28_04803 0.41 +0.5
5,484,955 + PFR28_04803 0.41 +0.3
5,484,955 + PFR28_04803 0.41 +0.5
5,484,956 - PFR28_04803 0.41 +0.7
5,484,956 - PFR28_04803 0.41 -0.9
5,484,956 - PFR28_04803 0.41 -0.4
5,484,956 - PFR28_04803 0.41 -0.1
5,484,956 - PFR28_04803 0.41 -1.5
5,484,956 - PFR28_04803 0.41 -0.3
5,485,030 + PFR28_04803 0.56 +0.2
5,485,030 + PFR28_04803 0.56 -0.2
5,485,031 - PFR28_04803 0.56 -0.6
5,485,067 - PFR28_04803 0.64 +0.2
5,485,067 - PFR28_04803 0.64 +0.3
5,485,147 - PFR28_04803 0.80 +0.1
5,485,147 - PFR28_04803 0.80 +0.7
5,485,169 - PFR28_04803 0.84 +0.8
5,485,169 - PFR28_04803 0.84 -0.6
5,485,388 + -0.8
5,485,388 + +0.7
5,485,659 + +0.2

Or see this region's nucleotide sequence