Strain Fitness in Pseudomonas sp. RS175 around PFR28_04801

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04800 and PFR28_04801 overlap by 4 nucleotidesPFR28_04801 and PFR28_04802 are separated by 1 nucleotides PFR28_04800: PFR28_04800 - Multidrug resistance protein MdtA, at 5,480,519 to 5,481,298 _04800 PFR28_04801: PFR28_04801 - hypothetical protein, at 5,481,295 to 5,482,614 _04801 PFR28_04802: PFR28_04802 - hypothetical protein, at 5,482,616 to 5,484,721 _04802 Position (kb) 5481 5482 5483Strain fitness (log2 ratio) -1 0 1 2 3at 5480.298 kb on + strandat 5480.299 kb on - strandat 5480.299 kb on - strandat 5480.322 kb on + strandat 5480.322 kb on + strandat 5480.323 kb on - strandat 5480.368 kb on + strandat 5480.369 kb on - strandat 5480.389 kb on - strandat 5480.389 kb on - strandat 5480.412 kb on + strandat 5480.413 kb on - strandat 5480.518 kb on + strandat 5480.518 kb on + strandat 5480.534 kb on - strandat 5480.560 kb on - strandat 5480.707 kb on + strand, within PFR28_04800at 5480.707 kb on + strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.783 kb on + strand, within PFR28_04800at 5480.939 kb on + strand, within PFR28_04800at 5480.940 kb on - strand, within PFR28_04800at 5480.940 kb on - strand, within PFR28_04800at 5481.375 kb on + strandat 5481.376 kb on - strandat 5481.394 kb on + strandat 5481.394 kb on + strandat 5481.394 kb on + strandat 5481.394 kb on + strandat 5481.395 kb on - strandat 5481.446 kb on + strand, within PFR28_04801at 5481.731 kb on + strand, within PFR28_04801at 5481.731 kb on + strand, within PFR28_04801at 5481.731 kb on + strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.732 kb on - strand, within PFR28_04801at 5481.754 kb on - strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.757 kb on + strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.758 kb on - strand, within PFR28_04801at 5481.881 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.174 kb on + strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.175 kb on - strand, within PFR28_04801at 5482.564 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.604 kb on + strandat 5482.605 kb on - strandat 5482.605 kb on - strandat 5482.728 kb on - strandat 5482.831 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.916 kb on + strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.917 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5482.974 kb on - strand, within PFR28_04802at 5483.066 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.297 kb on + strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.298 kb on - strand, within PFR28_04802at 5483.382 kb on + strand, within PFR28_04802at 5483.382 kb on + strand, within PFR28_04802at 5483.437 kb on + strand, within PFR28_04802at 5483.519 kb on + strand, within PFR28_04802at 5483.519 kb on + strand, within PFR28_04802

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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5,480,298 + -0.8
5,480,299 - +0.4
5,480,299 - -0.5
5,480,322 + +2.8
5,480,322 + -1.3
5,480,323 - -0.3
5,480,368 + -0.2
5,480,369 - -0.2
5,480,389 - -0.4
5,480,389 - -0.2
5,480,412 + +0.4
5,480,413 - +0.4
5,480,518 + +1.0
5,480,518 + +1.5
5,480,534 - +0.7
5,480,560 - +0.1
5,480,707 + PFR28_04800 0.24 -0.7
5,480,707 + PFR28_04800 0.24 -0.8
5,480,708 - PFR28_04800 0.24 +0.3
5,480,708 - PFR28_04800 0.24 +0.5
5,480,708 - PFR28_04800 0.24 +1.9
5,480,783 + PFR28_04800 0.34 +0.1
5,480,939 + PFR28_04800 0.54 +1.3
5,480,940 - PFR28_04800 0.54 -0.1
5,480,940 - PFR28_04800 0.54 -1.1
5,481,375 + +1.1
5,481,376 - +0.9
5,481,394 + +0.1
5,481,394 + -0.4
5,481,394 + -0.2
5,481,394 + +0.0
5,481,395 - -0.3
5,481,446 + PFR28_04801 0.11 +0.2
5,481,731 + PFR28_04801 0.33 -0.3
5,481,731 + PFR28_04801 0.33 +1.6
5,481,731 + PFR28_04801 0.33 -0.3
5,481,732 - PFR28_04801 0.33 +0.4
5,481,732 - PFR28_04801 0.33 +1.9
5,481,732 - PFR28_04801 0.33 +1.6
5,481,732 - PFR28_04801 0.33 +0.2
5,481,732 - PFR28_04801 0.33 +0.2
5,481,732 - PFR28_04801 0.33 +0.3
5,481,732 - PFR28_04801 0.33 +0.1
5,481,732 - PFR28_04801 0.33 +0.3
5,481,754 - PFR28_04801 0.35 +0.2
5,481,757 + PFR28_04801 0.35 +1.3
5,481,757 + PFR28_04801 0.35 +0.2
5,481,757 + PFR28_04801 0.35 +0.6
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 +0.7
5,481,757 + PFR28_04801 0.35 -0.0
5,481,757 + PFR28_04801 0.35 +0.1
5,481,757 + PFR28_04801 0.35 -0.4
5,481,758 - PFR28_04801 0.35 +0.1
5,481,758 - PFR28_04801 0.35 +0.2
5,481,758 - PFR28_04801 0.35 +1.7
5,481,758 - PFR28_04801 0.35 +0.5
5,481,758 - PFR28_04801 0.35 +0.5
5,481,758 - PFR28_04801 0.35 +0.2
5,481,881 + PFR28_04801 0.44 +2.3
5,482,174 + PFR28_04801 0.67 +3.1
5,482,174 + PFR28_04801 0.67 -0.4
5,482,174 + PFR28_04801 0.67 -0.5
5,482,175 - PFR28_04801 0.67 -1.1
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 -0.3
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 +0.0
5,482,175 - PFR28_04801 0.67 +0.6
5,482,175 - PFR28_04801 0.67 +1.1
5,482,564 + +0.1
5,482,604 + +0.3
5,482,604 + +0.4
5,482,604 + +0.7
5,482,604 + +2.2
5,482,604 + +0.8
5,482,604 + +1.4
5,482,604 + -0.3
5,482,605 - +0.5
5,482,605 - +0.9
5,482,728 - -0.2
5,482,831 + PFR28_04802 0.10 +0.7
5,482,916 + PFR28_04802 0.14 +0.4
5,482,916 + PFR28_04802 0.14 +0.5
5,482,916 + PFR28_04802 0.14 -0.8
5,482,916 + PFR28_04802 0.14 +1.0
5,482,916 + PFR28_04802 0.14 +0.6
5,482,916 + PFR28_04802 0.14 +1.2
5,482,916 + PFR28_04802 0.14 +0.3
5,482,916 + PFR28_04802 0.14 -0.1
5,482,917 - PFR28_04802 0.14 -0.7
5,482,917 - PFR28_04802 0.14 +0.5
5,482,917 - PFR28_04802 0.14 +0.5
5,482,917 - PFR28_04802 0.14 +1.3
5,482,917 - PFR28_04802 0.14 +0.5
5,482,974 - PFR28_04802 0.17 +0.2
5,482,974 - PFR28_04802 0.17 +1.2
5,482,974 - PFR28_04802 0.17 -0.5
5,482,974 - PFR28_04802 0.17 +0.8
5,483,066 + PFR28_04802 0.21 +2.4
5,483,297 + PFR28_04802 0.32 +1.2
5,483,297 + PFR28_04802 0.32 +0.1
5,483,297 + PFR28_04802 0.32 +0.4
5,483,297 + PFR28_04802 0.32 +1.4
5,483,297 + PFR28_04802 0.32 +0.5
5,483,297 + PFR28_04802 0.32 +0.5
5,483,298 - PFR28_04802 0.32 +0.5
5,483,298 - PFR28_04802 0.32 +0.6
5,483,298 - PFR28_04802 0.32 +1.0
5,483,298 - PFR28_04802 0.32 +0.6
5,483,298 - PFR28_04802 0.32 +0.4
5,483,298 - PFR28_04802 0.32 -0.6
5,483,382 + PFR28_04802 0.36 +0.2
5,483,382 + PFR28_04802 0.36 +0.4
5,483,437 + PFR28_04802 0.39 +0.9
5,483,519 + PFR28_04802 0.43 +2.8
5,483,519 + PFR28_04802 0.43 -0.8

Or see this region's nucleotide sequence