Strain Fitness in Pseudomonas sp. RS175 around PFR28_00240

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00239 and PFR28_00240 are separated by 151 nucleotidesPFR28_00240 and PFR28_00241 are separated by 344 nucleotides PFR28_00239: PFR28_00239 - Nitric oxide reductase transcription regulator NorR2, at 265,129 to 266,685 _00239 PFR28_00240: PFR28_00240 - Flavohemoprotein, at 266,837 to 268,018 _00240 PFR28_00241: PFR28_00241 - Disulfide bond formation protein B, at 268,363 to 268,857 _00241 Position (kb) 266 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2 3at 266.032 kb on + strand, within PFR28_00239at 266.082 kb on + strand, within PFR28_00239at 266.139 kb on - strand, within PFR28_00239at 266.335 kb on + strand, within PFR28_00239at 266.810 kb on + strandat 266.921 kb on + strandat 267.018 kb on + strand, within PFR28_00240at 267.018 kb on + strand, within PFR28_00240at 267.019 kb on - strand, within PFR28_00240at 267.019 kb on - strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.027 kb on - strand, within PFR28_00240at 267.027 kb on - strand, within PFR28_00240at 267.215 kb on + strand, within PFR28_00240at 267.215 kb on + strand, within PFR28_00240at 267.216 kb on - strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.261 kb on - strand, within PFR28_00240at 267.261 kb on - strand, within PFR28_00240at 267.312 kb on + strand, within PFR28_00240at 267.356 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.533 kb on + strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.596 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.800 kb on + strand, within PFR28_00240at 267.800 kb on + strand, within PFR28_00240at 267.801 kb on - strand, within PFR28_00240at 267.902 kb on + strandat 267.902 kb on + strandat 267.903 kb on - strandat 267.903 kb on - strandat 268.016 kb on + strandat 268.016 kb on + strandat 268.016 kb on + strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.194 kb on + strandat 268.194 kb on + strandat 268.195 kb on - strandat 268.195 kb on - strandat 268.206 kb on - strandat 268.206 kb on - strandat 268.221 kb on + strandat 268.221 kb on + strandat 268.221 kb on + strandat 268.273 kb on + strandat 268.273 kb on + strandat 268.274 kb on - strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.388 kb on - strandat 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.479 kb on + strand, within PFR28_00241at 268.624 kb on + strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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266,032 + PFR28_00239 0.58 +0.6
266,082 + PFR28_00239 0.61 -0.4
266,139 - PFR28_00239 0.65 +0.7
266,335 + PFR28_00239 0.77 -0.2
266,810 + -0.5
266,921 + -1.0
267,018 + PFR28_00240 0.15 +1.2
267,018 + PFR28_00240 0.15 -0.2
267,019 - PFR28_00240 0.15 -0.4
267,019 - PFR28_00240 0.15 -0.4
267,026 + PFR28_00240 0.16 -0.2
267,026 + PFR28_00240 0.16 -0.1
267,026 + PFR28_00240 0.16 +0.1
267,026 + PFR28_00240 0.16 +0.1
267,027 - PFR28_00240 0.16 +0.9
267,027 - PFR28_00240 0.16 -0.2
267,215 + PFR28_00240 0.32 -0.4
267,215 + PFR28_00240 0.32 +0.4
267,216 - PFR28_00240 0.32 -1.6
267,260 + PFR28_00240 0.36 -0.6
267,260 + PFR28_00240 0.36 -0.5
267,260 + PFR28_00240 0.36 +1.1
267,260 + PFR28_00240 0.36 -0.7
267,260 + PFR28_00240 0.36 +0.6
267,260 + PFR28_00240 0.36 -0.4
267,260 + PFR28_00240 0.36 +0.4
267,260 + PFR28_00240 0.36 -0.8
267,260 + PFR28_00240 0.36 -0.7
267,261 - PFR28_00240 0.36 +0.6
267,261 - PFR28_00240 0.36 +0.2
267,312 + PFR28_00240 0.40 -1.0
267,356 + PFR28_00240 0.44 +0.2
267,407 + PFR28_00240 0.48 +0.7
267,407 + PFR28_00240 0.48 -1.3
267,407 + PFR28_00240 0.48 +0.3
267,408 - PFR28_00240 0.48 -0.5
267,408 - PFR28_00240 0.48 +0.2
267,408 - PFR28_00240 0.48 +0.1
267,445 - PFR28_00240 0.51 -0.4
267,445 - PFR28_00240 0.51 +0.4
267,455 + PFR28_00240 0.52 -0.9
267,455 + PFR28_00240 0.52 +0.0
267,455 + PFR28_00240 0.52 -0.7
267,456 - PFR28_00240 0.52 +0.2
267,456 - PFR28_00240 0.52 -0.6
267,533 + PFR28_00240 0.59 -0.1
267,534 - PFR28_00240 0.59 +0.1
267,534 - PFR28_00240 0.59 +0.4
267,596 + PFR28_00240 0.64 -0.9
267,794 + PFR28_00240 0.81 -0.8
267,794 + PFR28_00240 0.81 -1.1
267,794 + PFR28_00240 0.81 +0.8
267,794 + PFR28_00240 0.81 +0.1
267,794 + PFR28_00240 0.81 -0.7
267,794 + PFR28_00240 0.81 -0.4
267,794 + PFR28_00240 0.81 -0.5
267,794 + PFR28_00240 0.81 -0.0
267,794 + PFR28_00240 0.81 -0.4
267,794 + PFR28_00240 0.81 -0.1
267,794 + PFR28_00240 0.81 -0.4
267,794 + PFR28_00240 0.81 +0.3
267,794 + PFR28_00240 0.81 +0.2
267,794 + PFR28_00240 0.81 +1.1
267,794 + PFR28_00240 0.81 +3.3
267,795 - PFR28_00240 0.81 +0.5
267,795 - PFR28_00240 0.81 -0.7
267,795 - PFR28_00240 0.81 +0.1
267,795 - PFR28_00240 0.81 -0.2
267,795 - PFR28_00240 0.81 -0.8
267,795 - PFR28_00240 0.81 -0.1
267,795 - PFR28_00240 0.81 +0.2
267,795 - PFR28_00240 0.81 +0.9
267,795 - PFR28_00240 0.81 +0.2
267,795 - PFR28_00240 0.81 -1.0
267,795 - PFR28_00240 0.81 -0.6
267,795 - PFR28_00240 0.81 -1.2
267,795 - PFR28_00240 0.81 -0.1
267,800 + PFR28_00240 0.81 -0.2
267,800 + PFR28_00240 0.81 -1.9
267,801 - PFR28_00240 0.82 -0.3
267,902 + +0.7
267,902 + -0.7
267,903 - -0.7
267,903 - -1.3
268,016 + +1.0
268,016 + -0.6
268,016 + -1.1
268,017 - +0.5
268,017 - +0.3
268,017 - +1.3
268,017 - -0.1
268,017 - +1.2
268,017 - -0.2
268,017 - +1.5
268,017 - -0.4
268,194 + -0.3
268,194 + +0.3
268,195 - -0.2
268,195 - -1.1
268,206 - -0.3
268,206 - +0.4
268,221 + +0.1
268,221 + -0.9
268,221 + -0.5
268,273 + +0.5
268,273 + +0.2
268,274 - -0.9
268,329 + -0.4
268,329 + +0.2
268,329 + +0.7
268,329 + +0.0
268,329 + +0.1
268,329 + -1.4
268,329 + +0.6
268,330 - +0.1
268,330 - +0.6
268,330 - -0.7
268,330 - -0.0
268,388 - +0.7
268,438 + PFR28_00241 0.15 +0.7
268,438 + PFR28_00241 0.15 +0.7
268,438 + PFR28_00241 0.15 +0.7
268,438 + PFR28_00241 0.15 -0.3
268,439 - PFR28_00241 0.15 +0.7
268,439 - PFR28_00241 0.15 +0.7
268,439 - PFR28_00241 0.15 -0.9
268,439 - PFR28_00241 0.15 +0.7
268,479 + PFR28_00241 0.23 -0.9
268,624 + PFR28_00241 0.53 +0.7
268,625 - PFR28_00241 0.53 +0.7
268,625 - PFR28_00241 0.53 +0.7
268,625 - PFR28_00241 0.53 -0.9

Or see this region's nucleotide sequence