Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00329 and PFR28_00330 are separated by 9 nucleotides PFR28_00330 and PFR28_00331 are separated by 131 nucleotides PFR28_00331 and PFR28_00332 are separated by 169 nucleotides
PFR28_00329: PFR28_00329 - tRNA (guanine-N(1)-)-methyltransferase, at 358,739 to 359,527
_00329
PFR28_00330: PFR28_00330 - 50S ribosomal protein L19, at 359,537 to 359,887
_00330
PFR28_00331: PFR28_00331 - Tyrosine recombinase XerD, at 360,019 to 360,915
_00331
PFR28_00332: PFR28_00332 - Thiol:disulfide interchange protein DsbC, at 361,085 to 361,816
_00332
Position (kb) 360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.485 kb on + strand at 359.485 kb on + strand at 359.485 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.966 kb on + strand at 359.967 kb on - strand at 359.967 kb on - strand at 359.967 kb on - strand at 360.018 kb on + strand at 360.018 kb on + strand at 360.019 kb on - strand at 360.019 kb on - strand at 360.019 kb on - strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.045 kb on - strand at 360.268 kb on + strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.274 kb on + strand, within PFR28_00331 at 360.351 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.581 kb on + strand, within PFR28_00331 at 360.595 kb on + strand, within PFR28_00331 at 360.595 kb on + strand, within PFR28_00331 at 360.699 kb on + strand, within PFR28_00331 at 360.828 kb on + strand at 360.829 kb on - strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.998 kb on + strand at 360.999 kb on - strand at 360.999 kb on - strand at 360.999 kb on - strand at 361.168 kb on + strand, within PFR28_00332 at 361.244 kb on + strand, within PFR28_00332 at 361.244 kb on + strand, within PFR28_00332 at 361.277 kb on + strand, within PFR28_00332 at 361.278 kb on - strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.299 kb on - strand, within PFR28_00332 at 361.299 kb on - strand, within PFR28_00332 at 361.421 kb on + strand, within PFR28_00332 at 361.481 kb on + strand, within PFR28_00332 at 361.482 kb on - strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.714 kb on - strand, within PFR28_00332 at 361.714 kb on - strand, within PFR28_00332 at 361.727 kb on - strand, within PFR28_00332 at 361.758 kb on + strand at 361.769 kb on + strand at 361.769 kb on + strand at 361.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 359,485 + +0.5 359,485 + -0.6 359,485 + +0.8 359,885 + -1.0 359,885 + +0.1 359,885 + -1.6 359,885 + +0.8 359,885 + -1.5 359,885 + -1.0 359,885 + +0.2 359,885 + +0.2 359,885 + -1.2 359,885 + -1.8 359,966 + -0.7 359,967 - +0.3 359,967 - +0.3 359,967 - +0.1 360,018 + +0.5 360,018 + -2.0 360,019 - -0.4 360,019 - +0.3 360,019 - -0.6 360,044 + -1.0 360,044 + +0.4 360,044 + +0.3 360,044 + -0.2 360,045 - -0.3 360,268 + PFR28_00331 0.28 +0.3 360,269 - PFR28_00331 0.28 -1.0 360,269 - PFR28_00331 0.28 -1.3 360,269 - PFR28_00331 0.28 -1.3 360,274 + PFR28_00331 0.28 -1.8 360,351 + PFR28_00331 0.37 -1.0 360,448 + PFR28_00331 0.48 -0.0 360,448 + PFR28_00331 0.48 +0.7 360,448 + PFR28_00331 0.48 -1.5 360,448 + PFR28_00331 0.48 -0.0 360,448 + PFR28_00331 0.48 -2.6 360,449 - PFR28_00331 0.48 -3.2 360,449 - PFR28_00331 0.48 -2.9 360,449 - PFR28_00331 0.48 -0.9 360,449 - PFR28_00331 0.48 -1.3 360,581 + PFR28_00331 0.63 -1.3 360,595 + PFR28_00331 0.64 -1.9 360,595 + PFR28_00331 0.64 -0.5 360,699 + PFR28_00331 0.76 -2.5 360,828 + -0.5 360,829 - +0.5 360,853 + -1.8 360,853 + +1.1 360,853 + -1.0 360,853 + -2.8 360,853 + -1.0 360,853 + +0.3 360,853 + +2.5 360,853 + -1.7 360,853 + -1.0 360,853 + -1.6 360,853 + +1.4 360,853 + -0.3 360,853 + -2.5 360,853 + -0.8 360,854 - -0.2 360,854 - -1.5 360,854 - +0.2 360,854 - +0.5 360,854 - -2.0 360,854 - -1.9 360,854 - -1.0 360,991 + +0.2 360,991 + -1.0 360,991 + -0.1 360,991 + +0.8 360,991 + +0.3 360,991 + +0.8 360,991 + -1.6 360,991 + -0.5 360,992 - -0.2 360,992 - +1.0 360,992 - -2.2 360,992 - -1.3 360,992 - +0.4 360,992 - -0.6 360,992 - -1.7 360,992 - +0.4 360,992 - +1.1 360,998 + -0.3 360,999 - +1.5 360,999 - -1.0 360,999 - -1.0 361,168 + PFR28_00332 0.11 -0.4 361,244 + PFR28_00332 0.22 +0.3 361,244 + PFR28_00332 0.22 -0.5 361,277 + PFR28_00332 0.26 -0.0 361,278 - PFR28_00332 0.26 -0.6 361,298 + PFR28_00332 0.29 -0.3 361,298 + PFR28_00332 0.29 -0.0 361,298 + PFR28_00332 0.29 -0.2 361,298 + PFR28_00332 0.29 -0.4 361,298 + PFR28_00332 0.29 -0.3 361,298 + PFR28_00332 0.29 -0.0 361,298 + PFR28_00332 0.29 -0.3 361,299 - PFR28_00332 0.29 -0.5 361,299 - PFR28_00332 0.29 -0.5 361,421 + PFR28_00332 0.46 -0.5 361,481 + PFR28_00332 0.54 -0.4 361,482 - PFR28_00332 0.54 -1.6 361,541 + PFR28_00332 0.62 -0.3 361,541 + PFR28_00332 0.62 -0.2 361,541 + PFR28_00332 0.62 -0.2 361,542 - PFR28_00332 0.62 -1.9 361,542 - PFR28_00332 0.62 -1.0 361,542 - PFR28_00332 0.62 -1.3 361,542 - PFR28_00332 0.62 -2.0 361,542 - PFR28_00332 0.62 -2.6 361,542 - PFR28_00332 0.62 -1.6 361,713 + PFR28_00332 0.86 -0.5 361,713 + PFR28_00332 0.86 +0.1 361,713 + PFR28_00332 0.86 -0.6 361,713 + PFR28_00332 0.86 -0.2 361,713 + PFR28_00332 0.86 -0.1 361,714 - PFR28_00332 0.86 -3.2 361,714 - PFR28_00332 0.86 -2.3 361,727 - PFR28_00332 0.88 -0.0 361,758 + -0.1 361,769 + +0.6 361,769 + -1.1 361,889 + +0.6
Or see this region's nucleotide sequence