Strain Fitness in Pseudomonas sp. RS175 around PFR28_00679

Experiment: mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00678 and PFR28_00679 overlap by 8 nucleotidesPFR28_00679 and PFR28_00680 are separated by 1 nucleotidesPFR28_00680 and PFR28_00681 are separated by 55 nucleotides PFR28_00678: PFR28_00678 - hypothetical protein, at 721,822 to 722,859 _00678 PFR28_00679: PFR28_00679 - hypothetical protein, at 722,852 to 724,366 _00679 PFR28_00680: PFR28_00680 - hypothetical protein, at 724,368 to 724,829 _00680 PFR28_00681: PFR28_00681 - hypothetical protein, at 724,885 to 725,862 _00681 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 722.372 kb on + strand, within PFR28_00678at 722.372 kb on + strand, within PFR28_00678at 722.372 kb on + strand, within PFR28_00678at 722.373 kb on - strand, within PFR28_00678at 722.926 kb on + strandat 722.936 kb on + strandat 723.090 kb on + strand, within PFR28_00679at 723.090 kb on + strand, within PFR28_00679at 723.090 kb on + strand, within PFR28_00679at 723.091 kb on - strand, within PFR28_00679at 723.091 kb on - strand, within PFR28_00679at 723.151 kb on - strand, within PFR28_00679at 723.345 kb on + strand, within PFR28_00679at 723.345 kb on + strand, within PFR28_00679at 723.345 kb on + strand, within PFR28_00679at 723.346 kb on - strand, within PFR28_00679at 723.490 kb on + strand, within PFR28_00679at 723.490 kb on + strand, within PFR28_00679at 723.491 kb on - strand, within PFR28_00679at 723.491 kb on - strand, within PFR28_00679at 723.491 kb on - strand, within PFR28_00679at 723.491 kb on - strand, within PFR28_00679at 723.525 kb on + strand, within PFR28_00679at 723.525 kb on + strand, within PFR28_00679at 723.526 kb on - strand, within PFR28_00679at 723.526 kb on - strand, within PFR28_00679at 723.526 kb on - strand, within PFR28_00679at 723.526 kb on - strand, within PFR28_00679at 723.526 kb on - strand, within PFR28_00679at 723.737 kb on + strand, within PFR28_00679at 723.789 kb on + strand, within PFR28_00679at 723.790 kb on - strand, within PFR28_00679at 723.922 kb on - strand, within PFR28_00679at 724.081 kb on + strand, within PFR28_00679at 724.159 kb on - strand, within PFR28_00679at 724.159 kb on - strand, within PFR28_00679at 724.312 kb on + strandat 724.312 kb on + strandat 724.313 kb on - strandat 724.314 kb on + strandat 724.315 kb on - strandat 724.315 kb on - strandat 724.315 kb on - strandat 724.315 kb on - strandat 724.315 kb on - strandat 724.315 kb on - strandat 724.350 kb on + strandat 724.350 kb on + strandat 724.351 kb on - strandat 724.351 kb on - strandat 724.367 kb on - strandat 724.431 kb on + strand, within PFR28_00680at 724.431 kb on + strand, within PFR28_00680at 724.431 kb on + strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.432 kb on - strand, within PFR28_00680at 724.435 kb on + strand, within PFR28_00680at 724.435 kb on + strand, within PFR28_00680at 724.436 kb on - strand, within PFR28_00680at 724.436 kb on - strand, within PFR28_00680at 724.436 kb on - strand, within PFR28_00680at 724.493 kb on - strand, within PFR28_00680at 724.567 kb on - strand, within PFR28_00680at 724.669 kb on + strand, within PFR28_00680at 724.669 kb on + strand, within PFR28_00680at 724.669 kb on + strand, within PFR28_00680at 724.669 kb on + strand, within PFR28_00680at 724.669 kb on + strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.670 kb on - strand, within PFR28_00680at 724.794 kb on + strandat 724.795 kb on - strandat 724.833 kb on + strandat 724.833 kb on + strandat 724.833 kb on + strandat 724.833 kb on + strandat 724.833 kb on + strandat 724.834 kb on - strandat 724.834 kb on - strandat 724.834 kb on - strandat 724.834 kb on - strandat 724.834 kb on - strandat 724.834 kb on - strandat 724.922 kb on + strandat 724.922 kb on + strandat 724.922 kb on + strandat 724.922 kb on + strandat 724.923 kb on - strandat 724.923 kb on - strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.946 kb on + strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 724.947 kb on - strandat 725.060 kb on + strand, within PFR28_00681at 725.060 kb on + strand, within PFR28_00681at 725.060 kb on + strand, within PFR28_00681at 725.060 kb on + strand, within PFR28_00681at 725.061 kb on - strand, within PFR28_00681at 725.090 kb on + strand, within PFR28_00681at 725.090 kb on + strand, within PFR28_00681at 725.091 kb on - strand, within PFR28_00681at 725.091 kb on - strand, within PFR28_00681at 725.091 kb on - strand, within PFR28_00681at 725.091 kb on - strand, within PFR28_00681at 725.123 kb on + strand, within PFR28_00681at 725.315 kb on + strand, within PFR28_00681at 725.316 kb on - strand, within PFR28_00681

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM
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722,372 + PFR28_00678 0.53 -0.4
722,372 + PFR28_00678 0.53 +0.7
722,372 + PFR28_00678 0.53 -1.1
722,373 - PFR28_00678 0.53 -1.0
722,926 + +0.1
722,936 + -0.7
723,090 + PFR28_00679 0.16 -0.4
723,090 + PFR28_00679 0.16 -0.6
723,090 + PFR28_00679 0.16 -1.0
723,091 - PFR28_00679 0.16 -0.9
723,091 - PFR28_00679 0.16 -1.3
723,151 - PFR28_00679 0.20 -0.1
723,345 + PFR28_00679 0.33 -1.3
723,345 + PFR28_00679 0.33 -0.5
723,345 + PFR28_00679 0.33 -0.4
723,346 - PFR28_00679 0.33 -0.6
723,490 + PFR28_00679 0.42 -0.4
723,490 + PFR28_00679 0.42 -2.0
723,491 - PFR28_00679 0.42 -0.8
723,491 - PFR28_00679 0.42 -2.8
723,491 - PFR28_00679 0.42 -0.2
723,491 - PFR28_00679 0.42 -0.7
723,525 + PFR28_00679 0.44 -0.1
723,525 + PFR28_00679 0.44 +1.7
723,526 - PFR28_00679 0.44 -1.2
723,526 - PFR28_00679 0.44 -2.8
723,526 - PFR28_00679 0.44 -1.0
723,526 - PFR28_00679 0.44 -0.7
723,526 - PFR28_00679 0.44 -2.5
723,737 + PFR28_00679 0.58 -1.1
723,789 + PFR28_00679 0.62 -0.4
723,790 - PFR28_00679 0.62 -0.9
723,922 - PFR28_00679 0.71 -0.9
724,081 + PFR28_00679 0.81 -0.3
724,159 - PFR28_00679 0.86 -1.2
724,159 - PFR28_00679 0.86 +0.1
724,312 + -1.9
724,312 + -0.4
724,313 - -0.5
724,314 + -0.5
724,315 - -1.7
724,315 - +0.5
724,315 - -0.8
724,315 - -0.5
724,315 - -1.0
724,315 - -1.3
724,350 + -0.4
724,350 + -1.1
724,351 - -0.4
724,351 - +0.3
724,367 - -0.3
724,431 + PFR28_00680 0.14 -2.2
724,431 + PFR28_00680 0.14 -1.0
724,431 + PFR28_00680 0.14 -1.7
724,432 - PFR28_00680 0.14 -1.1
724,432 - PFR28_00680 0.14 -1.5
724,432 - PFR28_00680 0.14 -1.0
724,432 - PFR28_00680 0.14 -0.7
724,432 - PFR28_00680 0.14 -0.6
724,432 - PFR28_00680 0.14 +0.3
724,432 - PFR28_00680 0.14 -0.5
724,435 + PFR28_00680 0.15 +0.7
724,435 + PFR28_00680 0.15 +0.1
724,436 - PFR28_00680 0.15 -0.8
724,436 - PFR28_00680 0.15 -0.3
724,436 - PFR28_00680 0.15 -0.4
724,493 - PFR28_00680 0.27 -0.4
724,567 - PFR28_00680 0.43 -0.3
724,669 + PFR28_00680 0.65 -0.0
724,669 + PFR28_00680 0.65 -1.1
724,669 + PFR28_00680 0.65 +0.2
724,669 + PFR28_00680 0.65 -0.7
724,669 + PFR28_00680 0.65 -0.2
724,670 - PFR28_00680 0.65 -2.0
724,670 - PFR28_00680 0.65 -1.4
724,670 - PFR28_00680 0.65 -0.8
724,670 - PFR28_00680 0.65 -1.0
724,670 - PFR28_00680 0.65 -0.3
724,670 - PFR28_00680 0.65 -0.7
724,670 - PFR28_00680 0.65 -1.0
724,670 - PFR28_00680 0.65 -1.3
724,794 + +0.0
724,795 - -0.1
724,833 + -0.7
724,833 + -0.5
724,833 + -0.4
724,833 + -1.0
724,833 + -0.7
724,834 - -1.5
724,834 - +0.1
724,834 - +1.9
724,834 - +0.0
724,834 - -1.3
724,834 - -0.5
724,922 + -2.5
724,922 + -0.5
724,922 + -0.6
724,922 + -0.7
724,923 - +1.3
724,923 - -2.5
724,946 + -1.1
724,946 + -1.4
724,946 + -1.8
724,946 + -2.2
724,946 + -0.7
724,946 + -0.9
724,946 + -0.6
724,946 + +1.1
724,946 + -0.9
724,946 + -0.5
724,946 + -1.6
724,946 + -1.3
724,946 + -1.6
724,946 + -1.9
724,947 - -1.0
724,947 - -3.6
724,947 - -1.0
724,947 - -1.4
724,947 - -1.9
724,947 - -0.9
724,947 - -2.3
724,947 - -0.5
724,947 - -0.9
725,060 + PFR28_00681 0.18 +0.7
725,060 + PFR28_00681 0.18 -1.2
725,060 + PFR28_00681 0.18 -1.1
725,060 + PFR28_00681 0.18 -1.2
725,061 - PFR28_00681 0.18 -0.5
725,090 + PFR28_00681 0.21 +0.4
725,090 + PFR28_00681 0.21 -2.7
725,091 - PFR28_00681 0.21 -2.8
725,091 - PFR28_00681 0.21 -1.5
725,091 - PFR28_00681 0.21 -1.6
725,091 - PFR28_00681 0.21 -0.1
725,123 + PFR28_00681 0.24 -1.0
725,315 + PFR28_00681 0.44 -1.8
725,316 - PFR28_00681 0.44 -2.2

Or see this region's nucleotide sequence