Strain Fitness in Pseudomonas sp. RS175 around PFR28_00737

Experiment: mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00736 and PFR28_00737 are separated by 95 nucleotidesPFR28_00737 and PFR28_00738 are separated by 131 nucleotides PFR28_00736: PFR28_00736 - hypothetical protein, at 775,499 to 776,362 _00736 PFR28_00737: PFR28_00737 - hypothetical protein, at 776,458 to 777,369 _00737 PFR28_00738: PFR28_00738 - Isocitrate dehydrogenase kinase/phosphatase, at 777,501 to 779,222 _00738 Position (kb) 776 777 778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 775.484 kb on + strandat 775.485 kb on - strandat 775.495 kb on - strandat 775.495 kb on - strandat 775.495 kb on - strandat 775.524 kb on + strandat 775.715 kb on + strand, within PFR28_00736at 775.715 kb on + strand, within PFR28_00736at 775.715 kb on + strand, within PFR28_00736at 775.715 kb on + strand, within PFR28_00736at 775.715 kb on + strand, within PFR28_00736at 775.715 kb on + strand, within PFR28_00736at 775.716 kb on - strand, within PFR28_00736at 775.716 kb on - strand, within PFR28_00736at 775.716 kb on - strand, within PFR28_00736at 775.716 kb on - strand, within PFR28_00736at 775.763 kb on + strand, within PFR28_00736at 775.763 kb on + strand, within PFR28_00736at 775.764 kb on - strand, within PFR28_00736at 775.919 kb on + strand, within PFR28_00736at 775.919 kb on + strand, within PFR28_00736at 775.943 kb on - strand, within PFR28_00736at 775.943 kb on - strand, within PFR28_00736at 775.943 kb on - strand, within PFR28_00736at 776.054 kb on + strand, within PFR28_00736at 776.055 kb on - strand, within PFR28_00736at 776.055 kb on - strand, within PFR28_00736at 776.055 kb on - strand, within PFR28_00736at 776.077 kb on + strand, within PFR28_00736at 776.077 kb on + strand, within PFR28_00736at 776.077 kb on + strand, within PFR28_00736at 776.077 kb on + strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.078 kb on - strand, within PFR28_00736at 776.234 kb on + strand, within PFR28_00736at 776.234 kb on + strand, within PFR28_00736at 776.235 kb on - strand, within PFR28_00736at 776.267 kb on + strand, within PFR28_00736at 776.268 kb on - strand, within PFR28_00736at 776.268 kb on - strand, within PFR28_00736at 776.323 kb on + strandat 776.324 kb on - strandat 776.351 kb on - strandat 776.384 kb on + strandat 776.384 kb on + strandat 776.385 kb on - strandat 776.543 kb on + strandat 776.544 kb on - strandat 776.544 kb on - strandat 776.544 kb on - strandat 776.544 kb on - strandat 776.666 kb on + strand, within PFR28_00737at 776.667 kb on - strand, within PFR28_00737at 776.667 kb on - strand, within PFR28_00737at 776.667 kb on - strand, within PFR28_00737at 776.667 kb on - strand, within PFR28_00737at 776.675 kb on + strand, within PFR28_00737at 776.675 kb on + strand, within PFR28_00737at 776.675 kb on + strand, within PFR28_00737at 776.675 kb on + strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.676 kb on - strand, within PFR28_00737at 776.688 kb on + strand, within PFR28_00737at 776.688 kb on + strand, within PFR28_00737at 776.888 kb on + strand, within PFR28_00737at 776.889 kb on - strand, within PFR28_00737at 776.889 kb on - strand, within PFR28_00737at 777.092 kb on + strand, within PFR28_00737at 777.125 kb on + strand, within PFR28_00737at 777.125 kb on + strand, within PFR28_00737at 777.125 kb on + strand, within PFR28_00737at 777.125 kb on + strand, within PFR28_00737at 777.125 kb on + strand, within PFR28_00737at 777.276 kb on + strand, within PFR28_00737at 777.455 kb on + strandat 777.455 kb on + strandat 777.455 kb on + strandat 777.455 kb on + strandat 777.456 kb on - strandat 777.456 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.478 kb on + strandat 777.479 kb on - strandat 777.479 kb on - strandat 777.479 kb on - strandat 777.479 kb on - strandat 777.479 kb on - strandat 777.479 kb on - strandat 777.500 kb on + strandat 777.500 kb on + strandat 777.501 kb on - strandat 777.501 kb on - strandat 777.501 kb on - strandat 777.663 kb on + strandat 777.664 kb on - strandat 777.762 kb on + strand, within PFR28_00738at 777.762 kb on + strand, within PFR28_00738at 777.763 kb on - strand, within PFR28_00738at 777.813 kb on + strand, within PFR28_00738at 777.813 kb on + strand, within PFR28_00738at 777.813 kb on + strand, within PFR28_00738at 777.927 kb on + strand, within PFR28_00738at 777.927 kb on + strand, within PFR28_00738at 777.927 kb on + strand, within PFR28_00738at 777.928 kb on - strand, within PFR28_00738at 777.928 kb on - strand, within PFR28_00738at 777.928 kb on - strand, within PFR28_00738at 777.928 kb on - strand, within PFR28_00738at 777.978 kb on + strand, within PFR28_00738at 777.996 kb on + strand, within PFR28_00738at 778.039 kb on + strand, within PFR28_00738at 778.040 kb on - strand, within PFR28_00738at 778.110 kb on + strand, within PFR28_00738at 778.272 kb on + strand, within PFR28_00738at 778.273 kb on - strand, within PFR28_00738at 778.343 kb on + strand, within PFR28_00738at 778.343 kb on + strand, within PFR28_00738at 778.343 kb on + strand, within PFR28_00738at 778.344 kb on - strand, within PFR28_00738at 778.344 kb on - strand, within PFR28_00738at 778.344 kb on - strand, within PFR28_00738at 778.344 kb on - strand, within PFR28_00738at 778.344 kb on - strand, within PFR28_00738at 778.356 kb on + strand, within PFR28_00738at 778.356 kb on + strand, within PFR28_00738at 778.356 kb on + strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738at 778.357 kb on - strand, within PFR28_00738

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM
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775,484 + +0.2
775,485 - +0.6
775,495 - +0.9
775,495 - -0.8
775,495 - +0.9
775,524 + -0.6
775,715 + PFR28_00736 0.25 -1.4
775,715 + PFR28_00736 0.25 +0.1
775,715 + PFR28_00736 0.25 +0.6
775,715 + PFR28_00736 0.25 +2.0
775,715 + PFR28_00736 0.25 -0.1
775,715 + PFR28_00736 0.25 +1.0
775,716 - PFR28_00736 0.25 +0.6
775,716 - PFR28_00736 0.25 +1.1
775,716 - PFR28_00736 0.25 +0.7
775,716 - PFR28_00736 0.25 +0.7
775,763 + PFR28_00736 0.31 +0.6
775,763 + PFR28_00736 0.31 +1.6
775,764 - PFR28_00736 0.31 -0.2
775,919 + PFR28_00736 0.49 +0.0
775,919 + PFR28_00736 0.49 -1.4
775,943 - PFR28_00736 0.51 -0.4
775,943 - PFR28_00736 0.51 -0.4
775,943 - PFR28_00736 0.51 +0.2
776,054 + PFR28_00736 0.64 -2.2
776,055 - PFR28_00736 0.64 -0.3
776,055 - PFR28_00736 0.64 +0.7
776,055 - PFR28_00736 0.64 -0.0
776,077 + PFR28_00736 0.67 +1.4
776,077 + PFR28_00736 0.67 -0.4
776,077 + PFR28_00736 0.67 +0.6
776,077 + PFR28_00736 0.67 -0.1
776,078 - PFR28_00736 0.67 +0.1
776,078 - PFR28_00736 0.67 +0.4
776,078 - PFR28_00736 0.67 -1.0
776,078 - PFR28_00736 0.67 +0.3
776,078 - PFR28_00736 0.67 +0.1
776,078 - PFR28_00736 0.67 -0.1
776,234 + PFR28_00736 0.85 -0.1
776,234 + PFR28_00736 0.85 -0.0
776,235 - PFR28_00736 0.85 -0.1
776,267 + PFR28_00736 0.89 -0.6
776,268 - PFR28_00736 0.89 -0.2
776,268 - PFR28_00736 0.89 -1.0
776,323 + -1.4
776,324 - +0.3
776,351 - -0.1
776,384 + -0.7
776,384 + -2.2
776,385 - +0.1
776,543 + -1.0
776,544 - -0.8
776,544 - -0.4
776,544 - -1.0
776,544 - +0.6
776,666 + PFR28_00737 0.23 -1.4
776,667 - PFR28_00737 0.23 -1.4
776,667 - PFR28_00737 0.23 -1.2
776,667 - PFR28_00737 0.23 -0.8
776,667 - PFR28_00737 0.23 -1.9
776,675 + PFR28_00737 0.24 -2.2
776,675 + PFR28_00737 0.24 -2.8
776,675 + PFR28_00737 0.24 -2.0
776,675 + PFR28_00737 0.24 -1.6
776,676 - PFR28_00737 0.24 -2.0
776,676 - PFR28_00737 0.24 -2.4
776,676 - PFR28_00737 0.24 -1.2
776,676 - PFR28_00737 0.24 -2.2
776,676 - PFR28_00737 0.24 -2.1
776,676 - PFR28_00737 0.24 -1.3
776,676 - PFR28_00737 0.24 +0.6
776,676 - PFR28_00737 0.24 -1.8
776,676 - PFR28_00737 0.24 -2.6
776,688 + PFR28_00737 0.25 -2.2
776,688 + PFR28_00737 0.25 -3.5
776,888 + PFR28_00737 0.47 -2.8
776,889 - PFR28_00737 0.47 -1.6
776,889 - PFR28_00737 0.47 -2.6
777,092 + PFR28_00737 0.70 -1.6
777,125 + PFR28_00737 0.73 -3.4
777,125 + PFR28_00737 0.73 -1.4
777,125 + PFR28_00737 0.73 -1.9
777,125 + PFR28_00737 0.73 -1.7
777,125 + PFR28_00737 0.73 -2.4
777,276 + PFR28_00737 0.90 -1.7
777,455 + -0.8
777,455 + +0.9
777,455 + -1.3
777,455 + -1.2
777,456 - +1.6
777,456 - +0.0
777,475 - -0.0
777,475 - -0.3
777,475 - +0.8
777,478 + -1.3
777,478 + -1.1
777,478 + -0.8
777,478 + -1.1
777,478 + -1.1
777,478 + -0.3
777,478 + -0.8
777,478 + -0.7
777,479 - +0.2
777,479 - +0.0
777,479 - +0.0
777,479 - +0.8
777,479 - +0.3
777,479 - +1.4
777,500 + -0.9
777,500 + +0.2
777,501 - +0.4
777,501 - -0.3
777,501 - -0.1
777,663 + +0.3
777,664 - +1.5
777,762 + PFR28_00738 0.15 -0.2
777,762 + PFR28_00738 0.15 -0.1
777,763 - PFR28_00738 0.15 -0.8
777,813 + PFR28_00738 0.18 +0.8
777,813 + PFR28_00738 0.18 -0.7
777,813 + PFR28_00738 0.18 +0.1
777,927 + PFR28_00738 0.25 +0.6
777,927 + PFR28_00738 0.25 +1.1
777,927 + PFR28_00738 0.25 -0.1
777,928 - PFR28_00738 0.25 +0.3
777,928 - PFR28_00738 0.25 +0.8
777,928 - PFR28_00738 0.25 -0.4
777,928 - PFR28_00738 0.25 -0.2
777,978 + PFR28_00738 0.28 -0.6
777,996 + PFR28_00738 0.29 +0.6
778,039 + PFR28_00738 0.31 +0.0
778,040 - PFR28_00738 0.31 +0.2
778,110 + PFR28_00738 0.35 -0.4
778,272 + PFR28_00738 0.45 -1.7
778,273 - PFR28_00738 0.45 -0.2
778,343 + PFR28_00738 0.49 -0.2
778,343 + PFR28_00738 0.49 +0.8
778,343 + PFR28_00738 0.49 -0.2
778,344 - PFR28_00738 0.49 -1.1
778,344 - PFR28_00738 0.49 -0.1
778,344 - PFR28_00738 0.49 -1.8
778,344 - PFR28_00738 0.49 -1.2
778,344 - PFR28_00738 0.49 -0.9
778,356 + PFR28_00738 0.50 -0.0
778,356 + PFR28_00738 0.50 +0.5
778,356 + PFR28_00738 0.50 +0.4
778,357 - PFR28_00738 0.50 -0.4
778,357 - PFR28_00738 0.50 -0.9
778,357 - PFR28_00738 0.50 -1.1
778,357 - PFR28_00738 0.50 -0.4
778,357 - PFR28_00738 0.50 -0.8
778,357 - PFR28_00738 0.50 -0.3

Or see this region's nucleotide sequence