Experiment: plant=Squash; plant sample=Q5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25525 and LU632_RS25530 overlap by 4 nucleotides LU632_RS25530 and LU632_RS25535 are separated by 62 nucleotides LU632_RS25535 and LU632_RS25540 are separated by 48 nucleotides LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides
LU632_RS25525: LU632_RS25525 - alcohol dehydrogenase catalytic domain-containing protein, at 36,774 to 37,847
_RS25525
LU632_RS25530: LU632_RS25530 - HAD family phosphatase, at 37,844 to 38,482
_RS25530
LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690
_RS25535
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.556 kb on + strand, within LU632_RS25525 at 37.556 kb on + strand, within LU632_RS25525 at 37.557 kb on - strand, within LU632_RS25525 at 37.599 kb on - strand, within LU632_RS25525 at 37.612 kb on + strand, within LU632_RS25525 at 37.638 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.664 kb on - strand, within LU632_RS25525 at 37.814 kb on + strand at 37.814 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.844 kb on - strand at 37.844 kb on - strand at 37.861 kb on + strand at 37.951 kb on - strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 38.128 kb on + strand, within LU632_RS25530 at 38.129 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.265 kb on + strand, within LU632_RS25530 at 38.266 kb on - strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.490 kb on + strand at 38.520 kb on + strand at 38.521 kb on - strand at 38.521 kb on - strand at 38.523 kb on - strand at 38.538 kb on - strand at 38.541 kb on + strand at 38.541 kb on + strand at 38.585 kb on + strand at 38.585 kb on + strand at 38.586 kb on - strand at 38.588 kb on + strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.645 kb on + strand at 38.646 kb on - strand at 38.672 kb on + strand, within LU632_RS25535 at 38.672 kb on + strand, within LU632_RS25535 at 38.750 kb on + strand, within LU632_RS25535 at 38.847 kb on - strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.020 kb on + strand, within LU632_RS25535 at 39.026 kb on - strand, within LU632_RS25535 at 39.091 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.194 kb on - strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.300 kb on + strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.607 kb on + strand at 39.607 kb on + strand at 39.664 kb on + strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.670 kb on - strand at 39.670 kb on - strand at 39.675 kb on + strand at 39.676 kb on - strand at 39.677 kb on + strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.703 kb on + strand at 39.703 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.719 kb on + strand at 39.719 kb on + strand at 39.720 kb on - strand at 39.720 kb on - strand at 39.736 kb on + strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.809 kb on + strand, within LU632_RS25540 at 39.809 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=Q5; plant location=P2 remove 37,556 + LU632_RS25525 0.73 -1.0 37,556 + LU632_RS25525 0.73 +1.9 37,557 - LU632_RS25525 0.73 +2.3 37,599 - LU632_RS25525 0.77 +1.8 37,612 + LU632_RS25525 0.78 +0.1 37,638 - LU632_RS25525 0.80 -0.9 37,657 - LU632_RS25525 0.82 -0.2 37,657 - LU632_RS25525 0.82 -0.8 37,664 - LU632_RS25525 0.83 +1.7 37,814 + -0.3 37,814 + -1.1 37,843 + -0.7 37,843 + +0.9 37,843 + -1.1 37,843 + -0.5 37,844 - -0.1 37,844 - -0.9 37,861 + +0.7 37,951 - LU632_RS25530 0.17 -1.1 37,975 + LU632_RS25530 0.21 -0.3 37,975 + LU632_RS25530 0.21 +0.1 37,975 + LU632_RS25530 0.21 +3.1 38,128 + LU632_RS25530 0.44 -1.5 38,129 - LU632_RS25530 0.45 +0.1 38,262 - LU632_RS25530 0.65 +0.5 38,262 - LU632_RS25530 0.65 -0.5 38,265 + LU632_RS25530 0.66 +1.7 38,266 - LU632_RS25530 0.66 -1.4 38,369 + LU632_RS25530 0.82 -0.2 38,369 + LU632_RS25530 0.82 -1.3 38,369 + LU632_RS25530 0.82 +0.1 38,369 + LU632_RS25530 0.82 -2.6 38,370 - LU632_RS25530 0.82 -1.5 38,370 - LU632_RS25530 0.82 -1.1 38,370 - LU632_RS25530 0.82 -0.7 38,370 - LU632_RS25530 0.82 +1.2 38,370 - LU632_RS25530 0.82 -1.1 38,370 - LU632_RS25530 0.82 +1.7 38,370 - LU632_RS25530 0.82 +0.7 38,490 + +0.9 38,520 + +0.2 38,521 - -0.3 38,521 - -0.6 38,523 - -0.7 38,538 - +0.0 38,541 + -0.5 38,541 + +3.7 38,585 + +0.2 38,585 + -0.3 38,586 - -1.9 38,588 + -0.6 38,589 - +0.4 38,589 - -0.5 38,589 - -0.7 38,645 + -1.9 38,646 - -1.3 38,672 + LU632_RS25535 0.11 +0.1 38,672 + LU632_RS25535 0.11 -1.4 38,750 + LU632_RS25535 0.18 -1.3 38,847 - LU632_RS25535 0.26 +0.3 39,008 + LU632_RS25535 0.40 +3.6 39,008 + LU632_RS25535 0.40 -0.1 39,008 + LU632_RS25535 0.40 +0.5 39,009 - LU632_RS25535 0.40 -0.5 39,009 - LU632_RS25535 0.40 -1.1 39,009 - LU632_RS25535 0.40 -1.6 39,009 - LU632_RS25535 0.40 -0.9 39,009 - LU632_RS25535 0.40 -0.5 39,017 + LU632_RS25535 0.41 +0.1 39,017 + LU632_RS25535 0.41 +1.5 39,017 + LU632_RS25535 0.41 -1.6 39,020 + LU632_RS25535 0.41 -1.3 39,026 - LU632_RS25535 0.42 +1.1 39,091 - LU632_RS25535 0.48 +0.2 39,159 - LU632_RS25535 0.54 -0.1 39,159 - LU632_RS25535 0.54 +0.8 39,163 - LU632_RS25535 0.54 +0.1 39,163 - LU632_RS25535 0.54 +3.6 39,163 - LU632_RS25535 0.54 +1.1 39,194 - LU632_RS25535 0.57 -0.0 39,210 + LU632_RS25535 0.58 -0.9 39,210 + LU632_RS25535 0.58 -0.6 39,210 + LU632_RS25535 0.58 -0.6 39,210 + LU632_RS25535 0.58 -0.8 39,211 - LU632_RS25535 0.58 -0.5 39,211 - LU632_RS25535 0.58 -1.1 39,281 - LU632_RS25535 0.64 -2.6 39,281 - LU632_RS25535 0.64 -0.0 39,283 - LU632_RS25535 0.64 +1.4 39,283 - LU632_RS25535 0.64 +0.1 39,283 - LU632_RS25535 0.64 +2.3 39,283 - LU632_RS25535 0.64 -1.4 39,300 + LU632_RS25535 0.66 +0.4 39,337 - LU632_RS25535 0.69 -1.0 39,337 - LU632_RS25535 0.69 -0.9 39,468 + LU632_RS25535 0.81 +0.1 39,468 + LU632_RS25535 0.81 -0.9 39,469 - LU632_RS25535 0.81 -0.5 39,469 - LU632_RS25535 0.81 -1.0 39,607 + +0.9 39,607 + +2.7 39,664 + -1.6 39,665 - -0.5 39,665 - +1.8 39,665 - -0.6 39,670 - +0.1 39,670 - +0.2 39,675 + +0.2 39,676 - -0.0 39,677 + +1.6 39,701 + +0.2 39,701 + -0.9 39,702 - +0.8 39,702 - -0.9 39,702 - +0.3 39,702 - -0.9 39,702 - +0.3 39,702 - +0.3 39,702 - +0.3 39,703 + +2.2 39,703 - +0.1 39,704 - -1.1 39,704 - +0.2 39,704 - +1.1 39,704 - -2.2 39,719 + -0.9 39,719 + -0.3 39,720 - +0.1 39,720 - -0.8 39,736 + +0.7 39,737 - +0.7 39,737 - -0.3 39,737 - +2.3 39,809 + LU632_RS25540 0.12 -0.4 39,809 - LU632_RS25540 0.12 -2.8 39,810 - LU632_RS25540 0.12 -1.5 39,810 - LU632_RS25540 0.12 -0.3 39,810 - LU632_RS25540 0.12 +0.5 40,040 + LU632_RS25540 0.52 -0.4 40,312 - +0.1 40,315 + -0.2 40,321 + -1.2 40,326 + -0.5 40,326 + -0.2 40,354 + -2.0 40,372 + +1.7 40,373 - -1.9 40,455 - -0.1 40,461 + -0.9 40,470 - LU632_RS25545 0.10 -1.2 40,494 + LU632_RS25545 0.24 -0.5 40,665 + +0.4 40,674 + +0.7 40,674 + -1.6 40,674 + -2.3 40,675 - -0.1 40,675 - +0.4 40,675 - -0.9 40,675 - +0.7 40,675 - +0.1 40,675 - -2.1 40,675 - -0.8 40,675 - -0.1
Or see this region's nucleotide sequence