Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23280

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
4,433,888	+		LU632_RS23275	0.49	-0.8
4,433,888	+		LU632_RS23275	0.49	+0.9
4,433,888	+		LU632_RS23275	0.49	-2.5
4,433,889	-		LU632_RS23275	0.49	-1.2
4,433,896	-		LU632_RS23275	0.49	-0.6
4,433,896	-		LU632_RS23275	0.49	-0.7
4,434,050	+		LU632_RS23275	0.59	-0.1
4,434,051	-		LU632_RS23275	0.59	-1.3
4,434,051	-		LU632_RS23275	0.59	-0.4
4,434,052	+		LU632_RS23275	0.59	+0.4
4,434,052	+		LU632_RS23275	0.59	-0.1
4,434,052	+		LU632_RS23275	0.59	+0.1
4,434,052	+		LU632_RS23275	0.59	+0.1
4,434,052	+		LU632_RS23275	0.59	+0.4
4,434,052	+		LU632_RS23275	0.59	-2.2
4,434,053	-		LU632_RS23275	0.59	-1.0
4,434,053	-		LU632_RS23275	0.59	+0.2
4,434,053	-		LU632_RS23275	0.59	-0.9
4,434,053	-		LU632_RS23275	0.59	-0.8
4,434,149	-		LU632_RS23275	0.65	-1.1
4,434,149	-		LU632_RS23275	0.65	+1.4
4,434,223	-		LU632_RS23275	0.69	+0.2
4,434,299	+		LU632_RS23275	0.74	+0.1
4,434,327	-		LU632_RS23275	0.75	-1.0
4,434,327	-		LU632_RS23275	0.75	-1.4
4,434,522	+		LU632_RS23275	0.87	-0.2
4,434,522	+		LU632_RS23275	0.87	-0.6
4,434,523	-		LU632_RS23275	0.87	-0.6
4,434,526	+		LU632_RS23275	0.87	-0.6
4,434,526	+		LU632_RS23275	0.87	-0.4
4,434,629	+				+0.4
4,434,629	+				-2.4
4,434,629	+				-0.8
4,434,630	-				+1.7
4,434,631	+				-0.2
4,434,632	-				-1.9
4,434,632	-				-0.4
4,434,710	+				-1.2
4,434,730	+				-0.1
4,434,731	-				+2.4
4,434,814	+				-0.7
4,434,814	+				-1.1
4,435,025	-		LU632_RS23280	0.26	+0.1
4,435,025	-		LU632_RS23280	0.26	+1.6
4,435,025	-		LU632_RS23280	0.26	+0.4
4,435,122	-		LU632_RS23280	0.36	-1.0
4,435,132	+		LU632_RS23280	0.38	+0.9
4,435,132	+		LU632_RS23280	0.38	-0.1
4,435,132	+		LU632_RS23280	0.38	+0.1
4,435,162	-		LU632_RS23280	0.41	-0.9
4,435,162	-		LU632_RS23280	0.41	+1.4
4,435,341	+		LU632_RS23280	0.61	-0.1
4,435,438	-		LU632_RS23280	0.72	+1.6
4,435,507	+		LU632_RS23280	0.80	+3.9
4,435,555	-		LU632_RS23280	0.85	-1.3
4,435,555	-		LU632_RS23280	0.85	+0.3
4,435,613	+				+1.4
4,435,613	+				-0.4
4,435,613	+				-1.2
4,435,614	-				-1.7
4,435,614	-				+1.4
4,435,614	-				-2.5
4,435,614	-				+2.4
4,435,614	-				-0.6
4,435,614	-				-0.1
4,435,614	-				+0.6
4,435,668	-				+0.4
4,435,689	+				-1.1
4,435,720	+				+0.5
4,435,724	-				-0.3
4,435,724	-				+0.9
4,435,724	-				-0.9
4,435,724	-				+0.4
4,435,757	+				-0.5
4,435,758	-				-0.1
4,435,766	+				-1.5
4,435,767	-				-0.6
4,435,767	-				-0.0