Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19155

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
3,619,761	+				-1.8
3,619,787	+				+0.2
3,619,787	+				+0.4
3,619,787	+				+0.1
3,619,788	-				-1.3
3,619,788	-				-0.6
3,619,788	-				+1.9
3,619,788	-				+1.3
3,619,788	-				-0.2
3,619,803	-				-0.6
3,619,803	-				+1.1
3,619,806	+				+0.8
3,619,806	+				-0.7
3,619,806	+				+0.9
3,619,807	-				-0.5
3,619,848	+				-0.4
3,619,900	-				-0.2
3,619,900	-				-1.5
3,619,907	-				-0.2
3,619,954	+				+0.6
3,619,954	+				-1.5
3,619,975	+				-0.2
3,619,975	+				+0.1
3,619,975	+				+0.6
3,619,975	+				-0.5
3,619,975	+				-1.1
3,619,975	+				+0.8
3,619,975	+				+0.6
3,619,975	+				+0.2
3,620,007	-		LU632_RS19150	0.12	-0.2
3,620,343	-		LU632_RS19150	0.84	-1.0
3,620,431	+				+0.7
3,620,438	-				+0.4
3,620,533	+				+0.3
3,620,606	+				+0.4
3,620,619	+				+0.9
3,620,620	-				+0.6
3,620,620	-				-0.5
3,620,622	-				+1.5
3,620,622	-				-0.2
3,620,768	+				-1.1
3,620,796	+				+0.8
3,620,845	+		LU632_RS19155	0.12	+1.0
3,620,934	+		LU632_RS19155	0.25	-1.2
3,620,956	+		LU632_RS19155	0.28	+0.4
3,620,956	+		LU632_RS19155	0.28	+0.6
3,620,957	-		LU632_RS19155	0.29	-0.5
3,620,957	-		LU632_RS19155	0.29	+2.0
3,621,033	+		LU632_RS19155	0.40	+1.1
3,621,034	-		LU632_RS19155	0.40	+0.4
3,621,320	+		LU632_RS19155	0.81	+0.6
3,621,402	-				+0.9
3,621,451	+				-0.3
3,622,077	+	gntR	LU632_RS19160	0.53	+2.4
3,622,078	-	gntR	LU632_RS19160	0.53	+1.4
3,622,151	+	gntR	LU632_RS19160	0.60	-0.1
3,622,286	-	gntR	LU632_RS19160	0.74	-0.3