Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14935

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
2,839,243	-		LU632_RS14925	0.84	+2.2
2,839,243	-		LU632_RS14925	0.84	+0.2
2,839,370	-				-0.8
2,839,381	+				-0.6
2,839,382	-				-1.1
2,839,405	+				-0.5
2,839,406	-				+2.2
2,839,406	-				-0.5
2,839,409	+				-0.5
2,839,410	-				-2.2
2,839,410	-				+0.1
2,839,410	-				-2.7
2,839,410	-				+3.8
2,839,440	-				-1.1
2,839,440	-				-1.2
2,839,477	-				-0.4
2,839,477	-				-0.6
2,839,503	-				-1.2
2,839,507	-				-1.5
2,839,515	+				+0.6
2,839,518	-				-0.3
2,839,714	+				+0.2
2,839,715	-				-0.3
2,839,719	-				-1.5
2,839,719	-				-1.3
2,839,726	+				-0.6
2,839,726	+				-1.1
2,839,727	-				-1.5
2,839,727	-				+0.7
2,839,728	+				-1.8
2,839,777	+				+2.0
2,839,777	+				-1.1
2,839,811	+				-0.6
2,839,851	+				+0.4
2,839,964	-				+0.8
2,839,965	-				-1.7
2,839,979	+				-2.2
2,839,982	+				+0.7
2,839,997	+				-0.6
2,840,242	+				+0.7
2,840,243	-				+0.2
2,840,243	-				-0.1
2,840,296	-		LU632_RS14935	0.14	-1.1
2,840,458	+		LU632_RS14935	0.49	-1.2
2,840,572	+		LU632_RS14935	0.74	-1.0
2,840,630	-		LU632_RS14935	0.86	-0.9
2,840,639	-		LU632_RS14935	0.88	+0.0
2,840,677	+				-0.0
2,840,677	+				-1.3
2,840,683	+				-1.2
2,840,684	-				-0.5
2,840,684	-				-1.5
2,840,707	-				-0.2
2,840,729	-				-0.4
2,840,744	+				-0.2
2,840,745	-				-0.1
2,840,781	-				-0.1
2,840,783	-				-1.0
2,841,224	-				+0.2
2,841,374	-				-0.1