Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14340

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
2,738,387	+				-1.0
2,738,387	+				+1.6
2,738,387	+				-0.7
2,738,948	+		LU632_RS14335	0.82	-1.1
2,738,948	+		LU632_RS14335	0.82	+0.6
2,738,948	+		LU632_RS14335	0.82	+0.8
2,738,949	-		LU632_RS14335	0.82	+0.8
2,738,949	-		LU632_RS14335	0.82	-0.2
2,738,950	+		LU632_RS14335	0.82	+0.7
2,738,950	+		LU632_RS14335	0.82	-1.8
2,738,950	+		LU632_RS14335	0.82	+0.2
2,738,950	+		LU632_RS14335	0.82	-0.4
2,738,951	-		LU632_RS14335	0.83	-0.6
2,738,951	-		LU632_RS14335	0.83	-0.7
2,738,951	-		LU632_RS14335	0.83	+1.4
2,739,144	+		LU632_RS14340	0.29	+0.6
2,739,144	+		LU632_RS14340	0.29	-1.9
2,739,189	-		LU632_RS14340	0.39	-1.1
2,739,644	+		LU632_RS14345	0.68	-0.2
2,739,644	+		LU632_RS14345	0.68	-0.5
2,739,645	-		LU632_RS14345	0.69	-0.8
2,739,647	-		LU632_RS14345	0.69	-0.8
2,739,891	-		LU632_RS14350	0.29	+0.1
2,739,907	-		LU632_RS14350	0.34	-0.3
2,739,907	-		LU632_RS14350	0.34	-0.4
2,739,907	-		LU632_RS14350	0.34	-1.5
2,739,908	+		LU632_RS14350	0.34	+2.2
2,739,959	+		LU632_RS14350	0.49	+0.2
2,739,960	-		LU632_RS14350	0.50	-0.8
2,739,960	-		LU632_RS14350	0.50	+0.4
2,739,960	-		LU632_RS14350	0.50	-1.3
2,739,960	-		LU632_RS14350	0.50	-0.6
2,739,960	-		LU632_RS14350	0.50	-0.1
2,739,960	-		LU632_RS14350	0.50	-2.0
2,740,132	+				-0.4
2,740,132	+				+0.2
2,740,132	+				-0.4
2,740,132	+				-1.1
2,740,132	+				+1.0
2,740,133	-				-3.0
2,740,138	+				+2.5
2,740,168	+		LU632_RS14355	0.10	+0.3
2,740,211	-		LU632_RS14355	0.20	-0.1
2,740,211	-		LU632_RS14355	0.20	-1.2
2,740,254	+		LU632_RS14355	0.30	-1.2
2,740,254	+		LU632_RS14355	0.30	-0.4
2,740,255	-		LU632_RS14355	0.30	-2.0
2,740,337	-		LU632_RS14355	0.49	-1.0
2,740,340	+		LU632_RS14355	0.50	-0.4
2,740,340	+		LU632_RS14355	0.50	-0.6
2,740,341	-		LU632_RS14355	0.50	-1.0
2,740,341	-		LU632_RS14355	0.50	-0.6
2,740,341	-		LU632_RS14355	0.50	-0.1
2,740,406	+		LU632_RS14355	0.65	+0.7