Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12690

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
2,413,219	-		LU632_RS12675	0.88	-1.6
2,413,376	-				-0.5
2,413,404	+				+2.1
2,413,404	+				+0.3
2,413,405	-				-1.0
2,413,408	+				-2.2
2,413,422	+				-0.5
2,413,422	+				-0.7
2,413,426	-				+0.5
2,413,438	+				-1.6
2,413,438	+				+0.5
2,413,439	-				+1.3
2,413,439	-				+0.1
2,413,477	+				+0.4
2,413,482	-				-0.1
2,413,576	+				+2.1
2,413,618	+				-0.9
2,413,681	+				-0.6
2,413,688	-				-0.5
2,413,876	+		LU632_RS12680	0.32	-0.2
2,413,880	+		LU632_RS12680	0.33	-1.1
2,413,880	+		LU632_RS12680	0.33	+1.5
2,413,881	-		LU632_RS12680	0.34	-0.2
2,413,895	+		LU632_RS12680	0.39	-2.0
2,413,911	+		LU632_RS12680	0.45	-0.9
2,413,968	-		LU632_RS12680	0.67	-0.1
2,414,065	-		LU632_RS12685	0.46	+5.1
2,414,093	-		LU632_RS12685	0.60	-0.5
2,414,152	-		LU632_RS12685	0.90	-0.5
2,414,291	+		LU632_RS12690	0.17	-0.1
2,414,292	-		LU632_RS12690	0.17	+1.3
2,414,343	+		LU632_RS12690	0.26	+0.3
2,414,485	-		LU632_RS12690	0.52	+0.7
2,414,697	-				+0.5