Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10440

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
1,992,409	+	flgJ	LU632_RS10435	0.21	-1.1
1,992,409	+	flgJ	LU632_RS10435	0.21	-0.2
1,992,409	+	flgJ	LU632_RS10435	0.21	+2.2
1,992,410	-	flgJ	LU632_RS10435	0.21	+2.2
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.7
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.0
1,992,413	+	flgJ	LU632_RS10435	0.22	+0.2
1,992,413	+	flgJ	LU632_RS10435	0.22	+0.2
1,992,413	+	flgJ	LU632_RS10435	0.22	-2.4
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.4
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.5
1,992,413	+	flgJ	LU632_RS10435	0.22	-2.3
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.5
1,992,413	+	flgJ	LU632_RS10435	0.22	+0.5
1,992,413	+	flgJ	LU632_RS10435	0.22	+1.3
1,992,413	+	flgJ	LU632_RS10435	0.22	+2.2
1,992,414	-	flgJ	LU632_RS10435	0.22	-0.2
1,992,414	-	flgJ	LU632_RS10435	0.22	+1.2
1,992,414	-	flgJ	LU632_RS10435	0.22	-1.2
1,992,414	-	flgJ	LU632_RS10435	0.22	+0.3
1,992,414	-	flgJ	LU632_RS10435	0.22	+2.2
1,992,414	-	flgJ	LU632_RS10435	0.22	+0.9
1,992,415	+	flgJ	LU632_RS10435	0.22	+0.8
1,992,415	+	flgJ	LU632_RS10435	0.22	-1.4
1,992,416	-	flgJ	LU632_RS10435	0.22	+1.2
1,992,416	-	flgJ	LU632_RS10435	0.22	+0.7
1,992,416	-	flgJ	LU632_RS10435	0.22	+1.9
1,992,416	-	flgJ	LU632_RS10435	0.22	-1.7
1,992,425	+	flgJ	LU632_RS10435	0.23	-0.5
1,992,425	+	flgJ	LU632_RS10435	0.23	+1.2
1,992,560	-	flgJ	LU632_RS10435	0.37	-1.6
1,992,565	+	flgJ	LU632_RS10435	0.38	+0.8
1,992,565	+	flgJ	LU632_RS10435	0.38	+0.6
1,992,661	+	flgJ	LU632_RS10435	0.48	+0.2
1,992,814	+	flgJ	LU632_RS10435	0.64	+1.2
1,992,866	+	flgJ	LU632_RS10435	0.70	-0.2
1,992,911	+	flgJ	LU632_RS10435	0.75	+2.2
1,992,911	+	flgJ	LU632_RS10435	0.75	-0.8
1,992,912	-	flgJ	LU632_RS10435	0.75	+0.7
1,992,920	+	flgJ	LU632_RS10435	0.76	+0.4
1,992,920	+	flgJ	LU632_RS10435	0.76	-1.3
1,992,921	-	flgJ	LU632_RS10435	0.76	+0.6
1,992,941	+	flgJ	LU632_RS10435	0.78	+0.1
1,993,052	+	flgJ	LU632_RS10435	0.90	+3.6
1,993,052	+	flgJ	LU632_RS10435	0.90	-0.4
1,993,053	-	flgJ	LU632_RS10435	0.90	-1.6
1,993,077	+				+1.6
1,993,118	+				+2.3
1,993,118	+				-1.7
1,993,182	+				-0.2
1,993,182	+				-0.2
1,993,183	-				-1.0
1,993,193	-				-1.5
1,993,213	+				-0.0
1,993,213	+				-0.1
1,993,214	-				+0.6
1,993,260	+				-2.4
1,993,260	+				-0.8
1,993,260	+				+1.5
1,993,394	+				+0.5
1,993,394	+				-0.2
1,993,403	+				-0.7
1,993,461	-				-0.7
1,993,469	+				-0.1
1,993,469	+				-1.7
1,993,470	-				+0.2
1,993,473	+				+1.0
1,993,546	-				-0.4
1,993,547	+				-1.0
1,993,587	+	flgK	LU632_RS10440	0.12	-1.2
1,993,679	+	flgK	LU632_RS10440	0.18	+0.1
1,993,866	-	flgK	LU632_RS10440	0.29	-1.0
1,994,061	+	flgK	LU632_RS10440	0.41	-1.7
1,994,062	-	flgK	LU632_RS10440	0.41	+0.6
1,994,063	+	flgK	LU632_RS10440	0.41	+3.2
1,994,064	-	flgK	LU632_RS10440	0.41	+0.3
1,994,064	-	flgK	LU632_RS10440	0.41	-2.7
1,994,064	-	flgK	LU632_RS10440	0.41	-2.1
1,994,109	+	flgK	LU632_RS10440	0.44	-1.5
1,994,171	-	flgK	LU632_RS10440	0.47	+0.2
1,994,354	+	flgK	LU632_RS10440	0.58	-1.3
1,994,474	+	flgK	LU632_RS10440	0.66	-0.4
1,994,663	+	flgK	LU632_RS10440	0.77	-0.2
1,994,726	-	flgK	LU632_RS10440	0.81	-0.2
1,994,761	+	flgK	LU632_RS10440	0.83	-0.5
1,994,809	-	flgK	LU632_RS10440	0.86	+0.6
1,994,837	+	flgK	LU632_RS10440	0.88	-0.1
1,994,970	+				+0.1
1,994,971	-				-2.0
1,995,040	-				-1.6
1,995,040	-				+0.3
1,995,055	-				-0.4
1,995,055	-				-1.4
1,995,084	-				+2.1
1,995,165	+	flgL	LU632_RS10445	0.11	+0.3
1,995,166	-	flgL	LU632_RS10445	0.11	+0.6
1,995,208	-	flgL	LU632_RS10445	0.15	-0.2
1,995,210	+	flgL	LU632_RS10445	0.16	-1.7
1,995,211	-	flgL	LU632_RS10445	0.16	-0.7
1,995,211	-	flgL	LU632_RS10445	0.16	-0.2
1,995,211	-	flgL	LU632_RS10445	0.16	-1.2
1,995,211	-	flgL	LU632_RS10445	0.16	+0.4
1,995,275	-	flgL	LU632_RS10445	0.22	-0.4
1,995,275	-	flgL	LU632_RS10445	0.22	-0.9
1,995,380	-	flgL	LU632_RS10445	0.33	+0.6
1,995,440	-	flgL	LU632_RS10445	0.39	+0.3
1,995,497	-	flgL	LU632_RS10445	0.45	-0.2
1,995,519	+	flgL	LU632_RS10445	0.48	-0.9
1,995,519	+	flgL	LU632_RS10445	0.48	-1.8
1,995,520	-	flgL	LU632_RS10445	0.48	-0.6
1,995,524	+	flgL	LU632_RS10445	0.48	-0.2
1,995,524	+	flgL	LU632_RS10445	0.48	+2.0
1,995,525	-	flgL	LU632_RS10445	0.48	-0.4
1,995,647	-	flgL	LU632_RS10445	0.61	-0.7
1,995,794	-	flgL	LU632_RS10445	0.76	-1.1
1,995,841	+	flgL	LU632_RS10445	0.81	-0.7
1,995,842	-	flgL	LU632_RS10445	0.81	+1.1
1,995,972	-				-2.1
1,995,972	-				-1.2