Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07320

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
1,380,935	+				-1.8
1,380,938	-				+0.2
1,380,938	-				+0.5
1,380,938	-				+0.1
1,380,965	-				-0.3
1,380,979	-				-0.7
1,381,079	+				-0.6
1,381,199	+				+0.7
1,381,199	+				-0.2
1,381,199	+				-1.6
1,381,199	+				-1.2
1,381,199	+				-1.7
1,381,200	-				+1.1
1,381,200	-				+1.6
1,381,200	-				-1.2
1,381,200	-				-1.1
1,381,200	-				-1.1
1,381,200	-				+1.9
1,381,201	+				+0.1
1,381,201	+				+0.7
1,381,201	+				-1.0
1,381,202	-				+1.7
1,381,231	+				+0.2
1,381,292	-		LU632_RS07310	0.30	-0.7
1,381,292	-		LU632_RS07310	0.30	-0.3
1,381,292	-		LU632_RS07310	0.30	+1.3
1,381,292	-		LU632_RS07310	0.30	+0.2
1,381,390	+		LU632_RS07310	0.63	-0.0
1,381,391	-		LU632_RS07310	0.64	-1.0
1,381,391	-		LU632_RS07310	0.64	-0.7
1,381,597	-				+1.6
1,381,597	-				+2.1
1,381,659	-				-0.0
1,381,659	-				-0.2
1,381,714	-		LU632_RS07315	0.24	+0.3
1,381,714	-		LU632_RS07315	0.24	+0.2
1,381,814	+		LU632_RS07315	0.80	-0.0
1,382,010	-		LU632_RS07320	0.23	+0.2
1,382,043	+		LU632_RS07320	0.32	+0.5
1,382,083	+		LU632_RS07320	0.44	-0.4
1,382,104	+		LU632_RS07320	0.50	-3.8
1,382,105	-		LU632_RS07320	0.51	-0.6
1,382,159	-		LU632_RS07320	0.67	+0.3
1,382,232	+		LU632_RS07320	0.88	-0.9
1,382,233	-		LU632_RS07320	0.88	-0.0
1,382,233	-		LU632_RS07320	0.88	+1.3