Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06730

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
1,292,350	+				-0.3
1,292,350	+				+0.2
1,292,350	+				+1.1
1,292,354	+				+0.0
1,292,354	+				+1.4
1,292,417	+	tal	LU632_RS06725	0.15	-0.5
1,292,418	-	tal	LU632_RS06725	0.15	+0.4
1,292,418	-	tal	LU632_RS06725	0.15	+1.2
1,292,500	+	tal	LU632_RS06725	0.23	+0.0
1,292,631	-	tal	LU632_RS06725	0.37	-0.8
1,292,631	-	tal	LU632_RS06725	0.37	-0.8
1,292,639	-	tal	LU632_RS06725	0.38	+0.3
1,292,728	+	tal	LU632_RS06725	0.47	-1.2
1,292,728	+	tal	LU632_RS06725	0.47	-2.2
1,292,729	-	tal	LU632_RS06725	0.47	-0.2
1,292,822	+	tal	LU632_RS06725	0.57	-0.5
1,292,823	-	tal	LU632_RS06725	0.57	+0.9
1,292,858	+	tal	LU632_RS06725	0.61	+0.7
1,292,887	-	tal	LU632_RS06725	0.64	-0.7
1,292,904	-	tal	LU632_RS06725	0.66	-0.8
1,292,910	-	tal	LU632_RS06725	0.66	-0.8
1,292,910	-	tal	LU632_RS06725	0.66	+0.1
1,292,910	-	tal	LU632_RS06725	0.66	-1.6
1,292,913	-	tal	LU632_RS06725	0.67	+3.4
1,292,913	-	tal	LU632_RS06725	0.67	+0.4
1,292,915	-	tal	LU632_RS06725	0.67	-0.5
1,292,927	+	tal	LU632_RS06725	0.68	+1.4
1,292,930	-	tal	LU632_RS06725	0.68	-0.3
1,292,939	-	tal	LU632_RS06725	0.69	-0.1
1,293,059	-	tal	LU632_RS06725	0.82	+0.8
1,293,059	-	tal	LU632_RS06725	0.82	-2.6
1,293,275	-				+1.5
1,293,275	-				-2.0
1,293,275	-				+0.4
1,293,301	+				-0.1
1,293,314	-				-1.3
1,293,356	-				-0.4
1,293,379	+				-0.5
1,293,379	+				+0.9
1,293,379	+				-0.1
1,293,379	+				-0.8
1,293,379	+				+0.4
1,293,380	-				-0.8
1,293,380	-				+0.4
1,293,394	+				+0.8
1,293,422	-				+0.8
1,293,503	+	tkt	LU632_RS06730	0.11	+0.4
1,293,503	+	tkt	LU632_RS06730	0.11	-0.9
1,293,503	+	tkt	LU632_RS06730	0.11	+0.1
1,293,504	-	tkt	LU632_RS06730	0.11	+0.2
1,293,506	-	tkt	LU632_RS06730	0.11	-0.2
1,293,660	+	tkt	LU632_RS06730	0.18	-0.8
1,293,733	+	tkt	LU632_RS06730	0.22	-1.0
1,293,734	-	tkt	LU632_RS06730	0.22	+0.3
1,293,741	+	tkt	LU632_RS06730	0.23	+1.4
1,293,742	-	tkt	LU632_RS06730	0.23	+1.4
1,293,745	+	tkt	LU632_RS06730	0.23	-0.2
1,293,911	+	tkt	LU632_RS06730	0.31	-1.0
1,294,012	-	tkt	LU632_RS06730	0.36	+0.4
1,294,130	+	tkt	LU632_RS06730	0.42	+2.7
1,294,160	+	tkt	LU632_RS06730	0.43	+1.4
1,294,160	+	tkt	LU632_RS06730	0.43	+1.7
1,294,160	+	tkt	LU632_RS06730	0.43	+0.5
1,294,160	+	tkt	LU632_RS06730	0.43	-0.5
1,294,161	-	tkt	LU632_RS06730	0.44	-1.5
1,294,196	+	tkt	LU632_RS06730	0.45	+0.8
1,294,229	+	tkt	LU632_RS06730	0.47	+0.7
1,294,499	+	tkt	LU632_RS06730	0.60	+0.1
1,294,499	+	tkt	LU632_RS06730	0.60	+0.3
1,294,499	+	tkt	LU632_RS06730	0.60	-2.4
1,294,499	+	tkt	LU632_RS06730	0.60	-0.6
1,294,499	+	tkt	LU632_RS06730	0.60	+2.4
1,294,500	-	tkt	LU632_RS06730	0.60	+0.1
1,294,509	-	tkt	LU632_RS06730	0.61	+1.2
1,294,624	-	tkt	LU632_RS06730	0.67	+1.4
1,294,679	-	tkt	LU632_RS06730	0.69	+0.6
1,294,679	-	tkt	LU632_RS06730	0.69	+0.7
1,294,679	-	tkt	LU632_RS06730	0.69	+1.0
1,294,750	+	tkt	LU632_RS06730	0.73	-0.2
1,294,750	+	tkt	LU632_RS06730	0.73	-1.0
1,294,751	-	tkt	LU632_RS06730	0.73	-0.7
1,294,751	-	tkt	LU632_RS06730	0.73	-0.8
1,294,860	+	tkt	LU632_RS06730	0.78	+0.2
1,294,910	+	tkt	LU632_RS06730	0.81	+0.9
1,294,910	+	tkt	LU632_RS06730	0.81	+0.4
1,294,910	+	tkt	LU632_RS06730	0.81	-0.8
1,294,910	+	tkt	LU632_RS06730	0.81	+0.4
1,294,911	-	tkt	LU632_RS06730	0.81	-1.4
1,294,911	-	tkt	LU632_RS06730	0.81	-1.6
1,294,911	-	tkt	LU632_RS06730	0.81	-1.2
1,295,153	+				-1.1
1,295,153	+				+0.1
1,295,153	+				-0.4
1,295,153	+				+1.6
1,295,154	-				+1.4
1,295,154	-				-1.7
1,295,154	-				-1.7
1,295,311	+				-0.3
1,295,312	-				-0.5
1,295,398	-				+0.0
1,295,436	+				+1.2
1,295,452	+				-0.2
1,295,453	-				+0.1
1,295,596	-				+1.5
1,295,662	-		LU632_RS06735	0.11	-0.8
1,295,713	-		LU632_RS06735	0.16	+0.0
1,295,713	-		LU632_RS06735	0.16	+1.0
1,295,844	-		LU632_RS06735	0.28	-1.3
1,295,844	-		LU632_RS06735	0.28	+0.3
1,295,845	+		LU632_RS06735	0.28	-1.4
1,295,845	+		LU632_RS06735	0.28	-1.2
1,295,845	+		LU632_RS06735	0.28	-2.0
1,295,846	-		LU632_RS06735	0.28	-0.7
1,295,846	-		LU632_RS06735	0.28	-2.3
1,295,890	+		LU632_RS06735	0.32	+0.3
1,295,891	-		LU632_RS06735	0.32	-0.8
1,295,891	-		LU632_RS06735	0.32	-2.0
1,296,149	+		LU632_RS06735	0.56	+1.6
1,296,149	+		LU632_RS06735	0.56	+0.4
1,296,150	-		LU632_RS06735	0.56	-0.5
1,296,163	-		LU632_RS06735	0.57	-0.6
1,296,163	-		LU632_RS06735	0.57	-0.5
1,296,201	+		LU632_RS06735	0.61	+0.8
1,296,202	-		LU632_RS06735	0.61	+0.8