Experiment: plant=Squash; plant sample=Q5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03460 and LU632_RS03465 are separated by 30 nucleotides LU632_RS03465 and LU632_RS03470 are separated by 503 nucleotides
LU632_RS03460: LU632_RS03460 - IS91 family transposase, at 706,544 to 707,767
_RS03460
LU632_RS03465: LU632_RS03465 - hypothetical protein, at 707,798 to 707,953
_RS03465
LU632_RS03470: LU632_RS03470 - hypothetical protein, at 708,457 to 708,939
_RS03470
Position (kb) 707
708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.873 kb on + strand, within LU632_RS03465 at 707.873 kb on + strand, within LU632_RS03465 at 707.955 kb on - strand at 707.964 kb on + strand at 707.967 kb on + strand at 707.979 kb on - strand at 707.981 kb on - strand at 708.074 kb on + strand at 708.077 kb on + strand at 708.077 kb on + strand at 708.077 kb on + strand at 708.078 kb on - strand at 708.078 kb on - strand at 708.081 kb on + strand at 708.082 kb on - strand at 708.150 kb on - strand at 708.213 kb on - strand at 708.229 kb on - strand at 708.242 kb on + strand at 708.300 kb on + strand at 708.301 kb on - strand at 708.334 kb on + strand at 708.335 kb on - strand at 708.358 kb on + strand at 708.359 kb on - strand at 708.361 kb on - strand at 708.424 kb on + strand at 708.425 kb on - strand at 708.451 kb on + strand at 708.451 kb on + strand at 708.451 kb on + strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.491 kb on + strand at 708.533 kb on + strand, within LU632_RS03470 at 708.534 kb on - strand, within LU632_RS03470 at 708.551 kb on - strand, within LU632_RS03470 at 708.599 kb on + strand, within LU632_RS03470 at 708.703 kb on + strand, within LU632_RS03470 at 708.704 kb on - strand, within LU632_RS03470 at 708.770 kb on + strand, within LU632_RS03470 at 708.771 kb on - strand, within LU632_RS03470 at 708.772 kb on + strand, within LU632_RS03470 at 708.773 kb on - strand, within LU632_RS03470 at 708.835 kb on + strand, within LU632_RS03470 at 708.835 kb on + strand, within LU632_RS03470 at 708.835 kb on + strand, within LU632_RS03470 at 708.836 kb on - strand, within LU632_RS03470 at 708.836 kb on - strand, within LU632_RS03470 at 708.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=Q5; plant location=P2 remove 707,873 + LU632_RS03465 0.48 -0.6 707,873 + LU632_RS03465 0.48 -1.9 707,955 - -1.6 707,964 + +0.4 707,967 + +1.8 707,979 - -2.1 707,981 - -0.6 708,074 + -0.9 708,077 + -0.5 708,077 + -1.6 708,077 + +1.4 708,078 - -1.4 708,078 - +0.9 708,081 + -0.1 708,082 - +0.1 708,150 - -0.2 708,213 - -1.1 708,229 - +2.0 708,242 + -0.8 708,300 + -0.1 708,301 - -2.5 708,334 + +1.2 708,335 - -0.3 708,358 + -0.1 708,359 - -1.5 708,361 - -1.4 708,424 + -0.9 708,425 - -2.1 708,451 + +0.2 708,451 + -0.6 708,451 + +1.1 708,452 - -0.7 708,452 - +0.1 708,452 - -1.1 708,452 - -2.2 708,491 + -1.1 708,533 + LU632_RS03470 0.16 -1.1 708,534 - LU632_RS03470 0.16 +2.4 708,551 - LU632_RS03470 0.19 +0.1 708,599 + LU632_RS03470 0.29 +1.4 708,703 + LU632_RS03470 0.51 -0.5 708,704 - LU632_RS03470 0.51 +0.2 708,770 + LU632_RS03470 0.65 +0.0 708,771 - LU632_RS03470 0.65 -0.1 708,772 + LU632_RS03470 0.65 -0.2 708,773 - LU632_RS03470 0.65 +0.9 708,835 + LU632_RS03470 0.78 +1.8 708,835 + LU632_RS03470 0.78 -0.1 708,835 + LU632_RS03470 0.78 +2.4 708,836 - LU632_RS03470 0.78 +0.2 708,836 - LU632_RS03470 0.78 +0.2 708,953 - -0.3
Or see this region's nucleotide sequence