Experiment: plant=Squash; plant sample=Q5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02785 and LU632_RS02790 are separated by 484 nucleotides LU632_RS02790 and LU632_RS02795 are separated by 241 nucleotides LU632_RS02795 and rluA are separated by 297 nucleotides
LU632_RS02785: LU632_RS02785 - hypothetical protein, at 563,157 to 564,776
_RS02785
LU632_RS02790: LU632_RS02790 - transposase, at 565,261 to 565,794
_RS02790
LU632_RS02795: LU632_RS02795 - transposase, at 566,036 to 566,471
_RS02795
LU632_RS02800: rluA - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 566,769 to 567,422
rluA
Position (kb) 565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 564.286 kb on + strand, within LU632_RS02785 at 564.409 kb on + strand, within LU632_RS02785 at 564.423 kb on - strand, within LU632_RS02785 at 564.442 kb on + strand, within LU632_RS02785 at 564.442 kb on + strand, within LU632_RS02785 at 564.442 kb on + strand, within LU632_RS02785 at 564.635 kb on + strand at 564.635 kb on + strand at 564.636 kb on - strand at 564.636 kb on - strand at 564.636 kb on - strand at 564.639 kb on + strand at 564.685 kb on + strand at 564.766 kb on + strand at 565.048 kb on + strand at 565.049 kb on - strand at 565.049 kb on - strand at 565.049 kb on - strand at 565.309 kb on + strand at 565.451 kb on - strand, within LU632_RS02790 at 565.466 kb on + strand, within LU632_RS02790 at 565.467 kb on - strand, within LU632_RS02790 at 565.467 kb on - strand, within LU632_RS02790 at 565.467 kb on - strand, within LU632_RS02790 at 565.530 kb on + strand, within LU632_RS02790 at 565.531 kb on - strand, within LU632_RS02790 at 565.559 kb on + strand, within LU632_RS02790 at 565.559 kb on + strand, within LU632_RS02790 at 565.559 kb on + strand, within LU632_RS02790 at 565.599 kb on + strand, within LU632_RS02790 at 565.600 kb on - strand, within LU632_RS02790 at 565.769 kb on - strand at 565.811 kb on + strand at 565.812 kb on - strand at 565.813 kb on + strand at 565.813 kb on + strand at 565.852 kb on + strand at 565.853 kb on - strand at 566.008 kb on + strand at 566.009 kb on - strand at 566.483 kb on + strand at 566.536 kb on + strand at 566.536 kb on + strand at 566.537 kb on - strand at 566.537 kb on - strand at 566.540 kb on + strand at 566.541 kb on - strand at 566.541 kb on - strand at 566.661 kb on - strand at 566.717 kb on - strand at 566.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=Q5; plant location=P2 remove 564,286 + LU632_RS02785 0.70 -0.9 564,409 + LU632_RS02785 0.77 +1.5 564,423 - LU632_RS02785 0.78 +2.2 564,442 + LU632_RS02785 0.79 +1.0 564,442 + LU632_RS02785 0.79 +1.5 564,442 + LU632_RS02785 0.79 -2.7 564,635 + -0.7 564,635 + +0.4 564,636 - -0.7 564,636 - +1.3 564,636 - +1.0 564,639 + +0.5 564,685 + +0.9 564,766 + +0.1 565,048 + -1.4 565,049 - +1.9 565,049 - +0.4 565,049 - +0.1 565,309 + +0.4 565,451 - LU632_RS02790 0.36 +2.0 565,466 + LU632_RS02790 0.38 +7.2 565,467 - LU632_RS02790 0.39 -0.5 565,467 - LU632_RS02790 0.39 -0.2 565,467 - LU632_RS02790 0.39 -0.7 565,530 + LU632_RS02790 0.50 -0.1 565,531 - LU632_RS02790 0.51 +0.9 565,559 + LU632_RS02790 0.56 -0.4 565,559 + LU632_RS02790 0.56 -3.5 565,559 + LU632_RS02790 0.56 -0.2 565,599 + LU632_RS02790 0.63 -0.3 565,600 - LU632_RS02790 0.63 -0.2 565,769 - +1.8 565,811 + -0.6 565,812 - -1.3 565,813 + +1.9 565,813 + +5.1 565,852 + -0.3 565,853 - -1.6 566,008 + +0.1 566,009 - +0.1 566,483 + +1.0 566,536 + -2.4 566,536 + -1.5 566,537 - +0.9 566,537 - -0.4 566,540 + -0.7 566,541 - +0.5 566,541 - +1.5 566,661 - +2.7 566,717 - -2.4 566,771 - -1.0
Or see this region's nucleotide sequence