Experiment: plant=Squash; plant sample=Q5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbpA and LU632_RS00590 overlap by 19 nucleotides LU632_RS00590 and LU632_RS00595 are separated by 41 nucleotides LU632_RS00595 and LU632_RS00600 are separated by 302 nucleotides
LU632_RS00585: cbpA - curved DNA-binding protein, at 121,126 to 122,061
cbpA
LU632_RS00590: LU632_RS00590 - chaperone-modulator protein CbpM, at 122,043 to 122,342
_RS00590
LU632_RS00595: LU632_RS00595 - hypothetical protein, at 122,384 to 122,719
_RS00595
LU632_RS00600: LU632_RS00600 - SgcJ/EcaC family oxidoreductase, at 123,022 to 123,474
_RS00600
Position (kb) 122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 121.089 kb on + strand at 121.135 kb on - strand at 121.178 kb on - strand at 121.214 kb on + strand at 121.282 kb on - strand, within cbpA at 121.317 kb on + strand, within cbpA at 121.318 kb on - strand, within cbpA at 121.327 kb on + strand, within cbpA at 121.374 kb on + strand, within cbpA at 121.539 kb on - strand, within cbpA at 121.719 kb on + strand, within cbpA at 121.723 kb on + strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.866 kb on - strand, within cbpA at 121.869 kb on + strand, within cbpA at 121.941 kb on + strand, within cbpA at 121.942 kb on - strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.984 kb on - strand at 122.264 kb on + strand, within LU632_RS00590 at 122.558 kb on + strand, within LU632_RS00595 at 122.570 kb on - strand, within LU632_RS00595 at 122.571 kb on + strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.631 kb on + strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.720 kb on - strand at 122.730 kb on + strand at 122.731 kb on - strand at 122.751 kb on + strand at 122.820 kb on - strand at 122.967 kb on + strand at 122.983 kb on - strand at 123.082 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.137 kb on + strand, within LU632_RS00600 at 123.302 kb on + strand, within LU632_RS00600 at 123.336 kb on + strand, within LU632_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=Q5; plant location=P2 remove 121,089 + +0.4 121,135 - -1.2 121,178 - +0.4 121,214 + -0.7 121,282 - cbpA LU632_RS00585 0.17 -1.6 121,317 + cbpA LU632_RS00585 0.20 -0.7 121,318 - cbpA LU632_RS00585 0.21 -0.3 121,327 + cbpA LU632_RS00585 0.21 -2.1 121,374 + cbpA LU632_RS00585 0.26 +0.3 121,539 - cbpA LU632_RS00585 0.44 -1.9 121,719 + cbpA LU632_RS00585 0.63 +0.3 121,723 + cbpA LU632_RS00585 0.64 -3.0 121,819 - cbpA LU632_RS00585 0.74 -0.6 121,819 - cbpA LU632_RS00585 0.74 -0.4 121,819 - cbpA LU632_RS00585 0.74 -1.3 121,866 - cbpA LU632_RS00585 0.79 +1.2 121,869 + cbpA LU632_RS00585 0.79 +1.6 121,941 + cbpA LU632_RS00585 0.87 -0.3 121,942 - cbpA LU632_RS00585 0.87 -0.7 121,953 + cbpA LU632_RS00585 0.88 +0.7 121,953 + cbpA LU632_RS00585 0.88 -0.6 121,954 - cbpA LU632_RS00585 0.88 +0.5 121,954 - cbpA LU632_RS00585 0.88 -0.1 121,984 - +1.6 122,264 + LU632_RS00590 0.74 -1.6 122,558 + LU632_RS00595 0.52 +0.7 122,570 - LU632_RS00595 0.55 -0.7 122,571 + LU632_RS00595 0.56 +1.2 122,572 - LU632_RS00595 0.56 -0.7 122,572 - LU632_RS00595 0.56 -0.8 122,572 - LU632_RS00595 0.56 -0.7 122,631 + LU632_RS00595 0.74 -0.5 122,632 - LU632_RS00595 0.74 +0.1 122,632 - LU632_RS00595 0.74 -1.2 122,632 - LU632_RS00595 0.74 -0.9 122,632 - LU632_RS00595 0.74 +0.5 122,720 - -0.7 122,730 + +0.0 122,731 - -0.5 122,751 + +0.2 122,820 - +0.5 122,967 + -1.6 122,983 - +0.2 123,082 - LU632_RS00600 0.13 +0.5 123,088 - LU632_RS00600 0.15 +0.5 123,088 - LU632_RS00600 0.15 -2.8 123,093 + LU632_RS00600 0.16 +1.5 123,093 + LU632_RS00600 0.16 +1.8 123,137 + LU632_RS00600 0.25 -0.3 123,302 + LU632_RS00600 0.62 +0.0 123,336 + LU632_RS00600 0.69 -0.1
Or see this region's nucleotide sequence