Experiment: mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02467 and PFR28_02468 are separated by 218 nucleotides PFR28_02468 and PFR28_02469 are separated by 62 nucleotides
PFR28_02467: PFR28_02467 - hypothetical protein, at 2,941,410 to 2,942,204
_02467
PFR28_02468: PFR28_02468 - Arginine--pyruvate transaminase AruH, at 2,942,423 to 2,943,592
_02468
PFR28_02469: PFR28_02469 - Glycerate 2-kinase, at 2,943,655 to 2,944,791
_02469
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2941.451 kb on + strand at 2941.451 kb on + strand at 2941.494 kb on + strand, within PFR28_02467 at 2941.495 kb on - strand, within PFR28_02467 at 2941.538 kb on - strand, within PFR28_02467 at 2941.554 kb on + strand, within PFR28_02467 at 2941.554 kb on + strand, within PFR28_02467 at 2941.554 kb on + strand, within PFR28_02467 at 2941.554 kb on + strand, within PFR28_02467 at 2941.555 kb on - strand, within PFR28_02467 at 2941.555 kb on - strand, within PFR28_02467 at 2941.555 kb on - strand, within PFR28_02467 at 2941.555 kb on - strand, within PFR28_02467 at 2941.556 kb on + strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.557 kb on - strand, within PFR28_02467 at 2941.558 kb on + strand, within PFR28_02467 at 2941.559 kb on - strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.695 kb on + strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.696 kb on - strand, within PFR28_02467 at 2941.779 kb on - strand, within PFR28_02467 at 2941.856 kb on + strand, within PFR28_02467 at 2941.856 kb on + strand, within PFR28_02467 at 2941.856 kb on + strand, within PFR28_02467 at 2941.857 kb on - strand, within PFR28_02467 at 2941.897 kb on + strand, within PFR28_02467 at 2941.898 kb on - strand, within PFR28_02467 at 2941.928 kb on + strand, within PFR28_02467 at 2941.928 kb on + strand, within PFR28_02467 at 2941.928 kb on + strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.929 kb on - strand, within PFR28_02467 at 2941.940 kb on + strand, within PFR28_02467 at 2941.941 kb on - strand, within PFR28_02467 at 2941.943 kb on + strand, within PFR28_02467 at 2941.944 kb on - strand, within PFR28_02467 at 2941.981 kb on + strand, within PFR28_02467 at 2942.015 kb on - strand, within PFR28_02467 at 2942.088 kb on - strand, within PFR28_02467 at 2942.088 kb on - strand, within PFR28_02467 at 2942.160 kb on + strand at 2942.161 kb on - strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.185 kb on + strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.186 kb on - strand at 2942.272 kb on + strand at 2942.305 kb on + strand at 2942.305 kb on + strand at 2942.305 kb on + strand at 2942.305 kb on + strand at 2942.322 kb on + strand at 2942.340 kb on + strand at 2942.350 kb on + strand at 2942.350 kb on + strand at 2942.350 kb on + strand at 2942.350 kb on + strand at 2942.351 kb on - strand at 2942.424 kb on + strand at 2942.424 kb on + strand at 2942.424 kb on + strand at 2942.424 kb on + strand at 2942.424 kb on + strand at 2942.424 kb on + strand at 2942.425 kb on - strand at 2942.425 kb on - strand at 2942.425 kb on - strand at 2942.449 kb on + strand at 2942.450 kb on - strand at 2942.504 kb on - strand at 2942.504 kb on - strand at 2942.621 kb on + strand, within PFR28_02468 at 2942.706 kb on + strand, within PFR28_02468 at 2942.959 kb on - strand, within PFR28_02468 at 2942.973 kb on + strand, within PFR28_02468 at 2942.973 kb on + strand, within PFR28_02468 at 2942.974 kb on - strand, within PFR28_02468 at 2942.974 kb on - strand, within PFR28_02468 at 2942.974 kb on - strand, within PFR28_02468 at 2943.173 kb on + strand, within PFR28_02468 at 2943.173 kb on + strand, within PFR28_02468 at 2943.174 kb on - strand, within PFR28_02468 at 2943.174 kb on - strand, within PFR28_02468 at 2943.174 kb on - strand, within PFR28_02468 at 2943.174 kb on - strand, within PFR28_02468 at 2943.207 kb on + strand, within PFR28_02468 at 2943.207 kb on + strand, within PFR28_02468 at 2943.207 kb on + strand, within PFR28_02468 at 2943.208 kb on - strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.216 kb on + strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.217 kb on - strand, within PFR28_02468 at 2943.399 kb on + strand, within PFR28_02468 at 2943.399 kb on + strand, within PFR28_02468 at 2943.399 kb on + strand, within PFR28_02468 at 2943.457 kb on + strand, within PFR28_02468 at 2943.458 kb on - strand, within PFR28_02468 at 2943.748 kb on - strand at 2943.791 kb on + strand, within PFR28_02469 at 2943.792 kb on - strand, within PFR28_02469 at 2943.792 kb on - strand, within PFR28_02469 at 2943.792 kb on - strand, within PFR28_02469 at 2943.792 kb on - strand, within PFR28_02469 at 2943.792 kb on - strand, within PFR28_02469 at 2943.804 kb on - strand, within PFR28_02469 at 2943.804 kb on - strand, within PFR28_02469 at 2943.804 kb on - strand, within PFR28_02469 at 2944.106 kb on + strand, within PFR28_02469 at 2944.106 kb on + strand, within PFR28_02469 at 2944.107 kb on - strand, within PFR28_02469 at 2944.107 kb on - strand, within PFR28_02469 at 2944.107 kb on - strand, within PFR28_02469 at 2944.107 kb on - strand, within PFR28_02469 at 2944.107 kb on - strand, within PFR28_02469 at 2944.457 kb on + strand, within PFR28_02469 at 2944.457 kb on + strand, within PFR28_02469 at 2944.457 kb on + strand, within PFR28_02469 at 2944.457 kb on + strand, within PFR28_02469 at 2944.457 kb on + strand, within PFR28_02469 at 2944.458 kb on - strand, within PFR28_02469
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM remove 2,941,451 + -3.0 2,941,451 + -0.5 2,941,494 + PFR28_02467 0.11 +0.3 2,941,495 - PFR28_02467 0.11 -1.5 2,941,538 - PFR28_02467 0.16 -1.3 2,941,554 + PFR28_02467 0.18 -0.3 2,941,554 + PFR28_02467 0.18 -0.6 2,941,554 + PFR28_02467 0.18 +0.0 2,941,554 + PFR28_02467 0.18 +0.3 2,941,555 - PFR28_02467 0.18 +0.7 2,941,555 - PFR28_02467 0.18 -0.2 2,941,555 - PFR28_02467 0.18 -0.4 2,941,555 - PFR28_02467 0.18 +0.2 2,941,556 + PFR28_02467 0.18 -0.2 2,941,557 - PFR28_02467 0.18 -0.9 2,941,557 - PFR28_02467 0.18 -0.3 2,941,557 - PFR28_02467 0.18 -0.1 2,941,557 - PFR28_02467 0.18 +1.1 2,941,557 - PFR28_02467 0.18 +0.1 2,941,557 - PFR28_02467 0.18 -0.4 2,941,557 - PFR28_02467 0.18 +0.8 2,941,558 + PFR28_02467 0.19 -0.5 2,941,559 - PFR28_02467 0.19 -0.3 2,941,695 + PFR28_02467 0.36 +0.5 2,941,695 + PFR28_02467 0.36 -0.2 2,941,695 + PFR28_02467 0.36 -0.2 2,941,695 + PFR28_02467 0.36 -0.5 2,941,695 + PFR28_02467 0.36 -0.2 2,941,695 + PFR28_02467 0.36 -0.6 2,941,695 + PFR28_02467 0.36 +1.2 2,941,695 + PFR28_02467 0.36 +0.0 2,941,696 - PFR28_02467 0.36 +0.1 2,941,696 - PFR28_02467 0.36 -2.0 2,941,696 - PFR28_02467 0.36 +0.5 2,941,696 - PFR28_02467 0.36 +0.5 2,941,696 - PFR28_02467 0.36 +1.3 2,941,696 - PFR28_02467 0.36 -0.8 2,941,696 - PFR28_02467 0.36 -0.4 2,941,779 - PFR28_02467 0.46 -0.8 2,941,856 + PFR28_02467 0.56 +1.7 2,941,856 + PFR28_02467 0.56 +0.9 2,941,856 + PFR28_02467 0.56 -1.3 2,941,857 - PFR28_02467 0.56 -0.3 2,941,897 + PFR28_02467 0.61 +0.7 2,941,898 - PFR28_02467 0.61 -0.1 2,941,928 + PFR28_02467 0.65 -1.2 2,941,928 + PFR28_02467 0.65 +0.1 2,941,928 + PFR28_02467 0.65 -0.1 2,941,929 - PFR28_02467 0.65 -0.7 2,941,929 - PFR28_02467 0.65 +0.7 2,941,929 - PFR28_02467 0.65 +0.7 2,941,929 - PFR28_02467 0.65 -0.6 2,941,929 - PFR28_02467 0.65 -0.2 2,941,929 - PFR28_02467 0.65 +0.2 2,941,940 + PFR28_02467 0.67 +0.0 2,941,941 - PFR28_02467 0.67 -0.3 2,941,943 + PFR28_02467 0.67 -0.3 2,941,944 - PFR28_02467 0.67 -0.1 2,941,981 + PFR28_02467 0.72 -0.3 2,942,015 - PFR28_02467 0.76 +0.6 2,942,088 - PFR28_02467 0.85 -0.1 2,942,088 - PFR28_02467 0.85 -1.1 2,942,160 + +1.7 2,942,161 - -0.3 2,942,185 + +0.4 2,942,185 + +0.5 2,942,185 + -1.1 2,942,185 + +0.7 2,942,185 + +1.0 2,942,185 + +0.0 2,942,185 + -0.9 2,942,186 - +0.4 2,942,186 - -0.7 2,942,186 - +0.1 2,942,186 - -1.5 2,942,186 - +0.7 2,942,186 - -0.1 2,942,186 - +0.7 2,942,186 - +0.3 2,942,186 - +1.9 2,942,272 + +0.3 2,942,305 + +0.8 2,942,305 + +0.2 2,942,305 + -0.3 2,942,305 + +0.4 2,942,322 + -0.2 2,942,340 + +0.7 2,942,350 + +0.6 2,942,350 + -2.6 2,942,350 + -0.3 2,942,350 + +0.9 2,942,351 - -0.6 2,942,424 + +0.7 2,942,424 + +0.4 2,942,424 + -0.7 2,942,424 + +0.2 2,942,424 + -0.0 2,942,424 + +1.1 2,942,425 - -0.6 2,942,425 - -0.2 2,942,425 - +1.3 2,942,449 + -0.1 2,942,450 - -0.5 2,942,504 - +0.1 2,942,504 - -1.8 2,942,621 + PFR28_02468 0.17 +0.5 2,942,706 + PFR28_02468 0.24 -0.1 2,942,959 - PFR28_02468 0.46 -0.0 2,942,973 + PFR28_02468 0.47 -0.2 2,942,973 + PFR28_02468 0.47 +1.2 2,942,974 - PFR28_02468 0.47 +0.1 2,942,974 - PFR28_02468 0.47 +0.1 2,942,974 - PFR28_02468 0.47 +0.2 2,943,173 + PFR28_02468 0.64 +0.4 2,943,173 + PFR28_02468 0.64 +1.4 2,943,174 - PFR28_02468 0.64 -0.4 2,943,174 - PFR28_02468 0.64 +0.1 2,943,174 - PFR28_02468 0.64 -0.4 2,943,174 - PFR28_02468 0.64 -0.7 2,943,207 + PFR28_02468 0.67 -0.2 2,943,207 + PFR28_02468 0.67 +1.0 2,943,207 + PFR28_02468 0.67 -0.4 2,943,208 - PFR28_02468 0.67 -0.6 2,943,216 + PFR28_02468 0.68 -0.2 2,943,216 + PFR28_02468 0.68 +0.5 2,943,216 + PFR28_02468 0.68 -0.1 2,943,216 + PFR28_02468 0.68 -0.9 2,943,216 + PFR28_02468 0.68 -0.1 2,943,216 + PFR28_02468 0.68 +0.4 2,943,216 + PFR28_02468 0.68 +0.3 2,943,216 + PFR28_02468 0.68 +0.7 2,943,216 + PFR28_02468 0.68 -0.1 2,943,216 + PFR28_02468 0.68 +0.3 2,943,216 + PFR28_02468 0.68 -0.8 2,943,216 + PFR28_02468 0.68 -0.9 2,943,216 + PFR28_02468 0.68 -0.4 2,943,216 + PFR28_02468 0.68 -0.5 2,943,216 + PFR28_02468 0.68 +0.7 2,943,216 + PFR28_02468 0.68 +2.0 2,943,216 + PFR28_02468 0.68 +0.3 2,943,216 + PFR28_02468 0.68 -0.3 2,943,216 + PFR28_02468 0.68 -0.3 2,943,216 + PFR28_02468 0.68 -0.4 2,943,217 - PFR28_02468 0.68 +0.4 2,943,217 - PFR28_02468 0.68 -0.3 2,943,217 - PFR28_02468 0.68 +0.5 2,943,217 - PFR28_02468 0.68 +0.4 2,943,217 - PFR28_02468 0.68 -0.1 2,943,217 - PFR28_02468 0.68 +0.4 2,943,217 - PFR28_02468 0.68 -0.3 2,943,217 - PFR28_02468 0.68 +0.0 2,943,217 - PFR28_02468 0.68 +0.8 2,943,399 + PFR28_02468 0.83 -0.1 2,943,399 + PFR28_02468 0.83 -0.3 2,943,399 + PFR28_02468 0.83 -0.9 2,943,457 + PFR28_02468 0.88 +0.2 2,943,458 - PFR28_02468 0.88 -1.5 2,943,748 - +0.0 2,943,791 + PFR28_02469 0.12 -0.8 2,943,792 - PFR28_02469 0.12 +0.0 2,943,792 - PFR28_02469 0.12 -0.2 2,943,792 - PFR28_02469 0.12 +1.0 2,943,792 - PFR28_02469 0.12 +0.5 2,943,792 - PFR28_02469 0.12 +0.3 2,943,804 - PFR28_02469 0.13 -1.6 2,943,804 - PFR28_02469 0.13 -1.2 2,943,804 - PFR28_02469 0.13 +0.3 2,944,106 + PFR28_02469 0.40 -0.4 2,944,106 + PFR28_02469 0.40 -0.3 2,944,107 - PFR28_02469 0.40 -0.9 2,944,107 - PFR28_02469 0.40 -0.9 2,944,107 - PFR28_02469 0.40 -1.0 2,944,107 - PFR28_02469 0.40 -0.1 2,944,107 - PFR28_02469 0.40 +0.3 2,944,457 + PFR28_02469 0.71 -0.3 2,944,457 + PFR28_02469 0.71 +0.4 2,944,457 + PFR28_02469 0.71 -0.1 2,944,457 + PFR28_02469 0.71 +0.5 2,944,457 + PFR28_02469 0.71 +0.0 2,944,458 - PFR28_02469 0.71 -0.7
Or see this region's nucleotide sequence