Strain Fitness in Pseudomonas sp. RS175 around PFR28_02468

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02467 and PFR28_02468 are separated by 218 nucleotidesPFR28_02468 and PFR28_02469 are separated by 62 nucleotides PFR28_02467: PFR28_02467 - hypothetical protein, at 2,941,410 to 2,942,204 _02467 PFR28_02468: PFR28_02468 - Arginine--pyruvate transaminase AruH, at 2,942,423 to 2,943,592 _02468 PFR28_02469: PFR28_02469 - Glycerate 2-kinase, at 2,943,655 to 2,944,791 _02469 Position (kb) 2942 2943 2944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2941.451 kb on + strandat 2941.451 kb on + strandat 2941.494 kb on + strand, within PFR28_02467at 2941.495 kb on - strand, within PFR28_02467at 2941.538 kb on - strand, within PFR28_02467at 2941.554 kb on + strand, within PFR28_02467at 2941.554 kb on + strand, within PFR28_02467at 2941.554 kb on + strand, within PFR28_02467at 2941.554 kb on + strand, within PFR28_02467at 2941.555 kb on - strand, within PFR28_02467at 2941.555 kb on - strand, within PFR28_02467at 2941.555 kb on - strand, within PFR28_02467at 2941.555 kb on - strand, within PFR28_02467at 2941.556 kb on + strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.557 kb on - strand, within PFR28_02467at 2941.558 kb on + strand, within PFR28_02467at 2941.559 kb on - strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.695 kb on + strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.696 kb on - strand, within PFR28_02467at 2941.779 kb on - strand, within PFR28_02467at 2941.856 kb on + strand, within PFR28_02467at 2941.856 kb on + strand, within PFR28_02467at 2941.856 kb on + strand, within PFR28_02467at 2941.857 kb on - strand, within PFR28_02467at 2941.897 kb on + strand, within PFR28_02467at 2941.898 kb on - strand, within PFR28_02467at 2941.928 kb on + strand, within PFR28_02467at 2941.928 kb on + strand, within PFR28_02467at 2941.928 kb on + strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.929 kb on - strand, within PFR28_02467at 2941.940 kb on + strand, within PFR28_02467at 2941.941 kb on - strand, within PFR28_02467at 2941.943 kb on + strand, within PFR28_02467at 2941.944 kb on - strand, within PFR28_02467at 2941.981 kb on + strand, within PFR28_02467at 2942.015 kb on - strand, within PFR28_02467at 2942.088 kb on - strand, within PFR28_02467at 2942.088 kb on - strand, within PFR28_02467at 2942.160 kb on + strandat 2942.161 kb on - strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.185 kb on + strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.186 kb on - strandat 2942.272 kb on + strandat 2942.305 kb on + strandat 2942.305 kb on + strandat 2942.305 kb on + strandat 2942.305 kb on + strandat 2942.322 kb on + strandat 2942.340 kb on + strandat 2942.350 kb on + strandat 2942.350 kb on + strandat 2942.350 kb on + strandat 2942.350 kb on + strandat 2942.351 kb on - strandat 2942.424 kb on + strandat 2942.424 kb on + strandat 2942.424 kb on + strandat 2942.424 kb on + strandat 2942.424 kb on + strandat 2942.424 kb on + strandat 2942.425 kb on - strandat 2942.425 kb on - strandat 2942.425 kb on - strandat 2942.449 kb on + strandat 2942.450 kb on - strandat 2942.504 kb on - strandat 2942.504 kb on - strandat 2942.621 kb on + strand, within PFR28_02468at 2942.706 kb on + strand, within PFR28_02468at 2942.959 kb on - strand, within PFR28_02468at 2942.973 kb on + strand, within PFR28_02468at 2942.973 kb on + strand, within PFR28_02468at 2942.974 kb on - strand, within PFR28_02468at 2942.974 kb on - strand, within PFR28_02468at 2942.974 kb on - strand, within PFR28_02468at 2943.173 kb on + strand, within PFR28_02468at 2943.173 kb on + strand, within PFR28_02468at 2943.174 kb on - strand, within PFR28_02468at 2943.174 kb on - strand, within PFR28_02468at 2943.174 kb on - strand, within PFR28_02468at 2943.174 kb on - strand, within PFR28_02468at 2943.207 kb on + strand, within PFR28_02468at 2943.207 kb on + strand, within PFR28_02468at 2943.207 kb on + strand, within PFR28_02468at 2943.208 kb on - strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.216 kb on + strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.217 kb on - strand, within PFR28_02468at 2943.399 kb on + strand, within PFR28_02468at 2943.399 kb on + strand, within PFR28_02468at 2943.399 kb on + strand, within PFR28_02468at 2943.457 kb on + strand, within PFR28_02468at 2943.458 kb on - strand, within PFR28_02468at 2943.748 kb on - strandat 2943.791 kb on + strand, within PFR28_02469at 2943.792 kb on - strand, within PFR28_02469at 2943.792 kb on - strand, within PFR28_02469at 2943.792 kb on - strand, within PFR28_02469at 2943.792 kb on - strand, within PFR28_02469at 2943.792 kb on - strand, within PFR28_02469at 2943.804 kb on - strand, within PFR28_02469at 2943.804 kb on - strand, within PFR28_02469at 2943.804 kb on - strand, within PFR28_02469at 2944.106 kb on + strand, within PFR28_02469at 2944.106 kb on + strand, within PFR28_02469at 2944.107 kb on - strand, within PFR28_02469at 2944.107 kb on - strand, within PFR28_02469at 2944.107 kb on - strand, within PFR28_02469at 2944.107 kb on - strand, within PFR28_02469at 2944.107 kb on - strand, within PFR28_02469at 2944.457 kb on + strand, within PFR28_02469at 2944.457 kb on + strand, within PFR28_02469at 2944.457 kb on + strand, within PFR28_02469at 2944.457 kb on + strand, within PFR28_02469at 2944.457 kb on + strand, within PFR28_02469at 2944.458 kb on - strand, within PFR28_02469

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
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2,941,451 + -3.0
2,941,451 + -0.5
2,941,494 + PFR28_02467 0.11 +0.3
2,941,495 - PFR28_02467 0.11 -1.5
2,941,538 - PFR28_02467 0.16 -1.3
2,941,554 + PFR28_02467 0.18 -0.3
2,941,554 + PFR28_02467 0.18 -0.6
2,941,554 + PFR28_02467 0.18 +0.0
2,941,554 + PFR28_02467 0.18 +0.3
2,941,555 - PFR28_02467 0.18 +0.7
2,941,555 - PFR28_02467 0.18 -0.2
2,941,555 - PFR28_02467 0.18 -0.4
2,941,555 - PFR28_02467 0.18 +0.2
2,941,556 + PFR28_02467 0.18 -0.2
2,941,557 - PFR28_02467 0.18 -0.9
2,941,557 - PFR28_02467 0.18 -0.3
2,941,557 - PFR28_02467 0.18 -0.1
2,941,557 - PFR28_02467 0.18 +1.1
2,941,557 - PFR28_02467 0.18 +0.1
2,941,557 - PFR28_02467 0.18 -0.4
2,941,557 - PFR28_02467 0.18 +0.8
2,941,558 + PFR28_02467 0.19 -0.5
2,941,559 - PFR28_02467 0.19 -0.3
2,941,695 + PFR28_02467 0.36 +0.5
2,941,695 + PFR28_02467 0.36 -0.2
2,941,695 + PFR28_02467 0.36 -0.2
2,941,695 + PFR28_02467 0.36 -0.5
2,941,695 + PFR28_02467 0.36 -0.2
2,941,695 + PFR28_02467 0.36 -0.6
2,941,695 + PFR28_02467 0.36 +1.2
2,941,695 + PFR28_02467 0.36 +0.0
2,941,696 - PFR28_02467 0.36 +0.1
2,941,696 - PFR28_02467 0.36 -2.0
2,941,696 - PFR28_02467 0.36 +0.5
2,941,696 - PFR28_02467 0.36 +0.5
2,941,696 - PFR28_02467 0.36 +1.3
2,941,696 - PFR28_02467 0.36 -0.8
2,941,696 - PFR28_02467 0.36 -0.4
2,941,779 - PFR28_02467 0.46 -0.8
2,941,856 + PFR28_02467 0.56 +1.7
2,941,856 + PFR28_02467 0.56 +0.9
2,941,856 + PFR28_02467 0.56 -1.3
2,941,857 - PFR28_02467 0.56 -0.3
2,941,897 + PFR28_02467 0.61 +0.7
2,941,898 - PFR28_02467 0.61 -0.1
2,941,928 + PFR28_02467 0.65 -1.2
2,941,928 + PFR28_02467 0.65 +0.1
2,941,928 + PFR28_02467 0.65 -0.1
2,941,929 - PFR28_02467 0.65 -0.7
2,941,929 - PFR28_02467 0.65 +0.7
2,941,929 - PFR28_02467 0.65 +0.7
2,941,929 - PFR28_02467 0.65 -0.6
2,941,929 - PFR28_02467 0.65 -0.2
2,941,929 - PFR28_02467 0.65 +0.2
2,941,940 + PFR28_02467 0.67 +0.0
2,941,941 - PFR28_02467 0.67 -0.3
2,941,943 + PFR28_02467 0.67 -0.3
2,941,944 - PFR28_02467 0.67 -0.1
2,941,981 + PFR28_02467 0.72 -0.3
2,942,015 - PFR28_02467 0.76 +0.6
2,942,088 - PFR28_02467 0.85 -0.1
2,942,088 - PFR28_02467 0.85 -1.1
2,942,160 + +1.7
2,942,161 - -0.3
2,942,185 + +0.4
2,942,185 + +0.5
2,942,185 + -1.1
2,942,185 + +0.7
2,942,185 + +1.0
2,942,185 + +0.0
2,942,185 + -0.9
2,942,186 - +0.4
2,942,186 - -0.7
2,942,186 - +0.1
2,942,186 - -1.5
2,942,186 - +0.7
2,942,186 - -0.1
2,942,186 - +0.7
2,942,186 - +0.3
2,942,186 - +1.9
2,942,272 + +0.3
2,942,305 + +0.8
2,942,305 + +0.2
2,942,305 + -0.3
2,942,305 + +0.4
2,942,322 + -0.2
2,942,340 + +0.7
2,942,350 + +0.6
2,942,350 + -2.6
2,942,350 + -0.3
2,942,350 + +0.9
2,942,351 - -0.6
2,942,424 + +0.7
2,942,424 + +0.4
2,942,424 + -0.7
2,942,424 + +0.2
2,942,424 + -0.0
2,942,424 + +1.1
2,942,425 - -0.6
2,942,425 - -0.2
2,942,425 - +1.3
2,942,449 + -0.1
2,942,450 - -0.5
2,942,504 - +0.1
2,942,504 - -1.8
2,942,621 + PFR28_02468 0.17 +0.5
2,942,706 + PFR28_02468 0.24 -0.1
2,942,959 - PFR28_02468 0.46 -0.0
2,942,973 + PFR28_02468 0.47 -0.2
2,942,973 + PFR28_02468 0.47 +1.2
2,942,974 - PFR28_02468 0.47 +0.1
2,942,974 - PFR28_02468 0.47 +0.1
2,942,974 - PFR28_02468 0.47 +0.2
2,943,173 + PFR28_02468 0.64 +0.4
2,943,173 + PFR28_02468 0.64 +1.4
2,943,174 - PFR28_02468 0.64 -0.4
2,943,174 - PFR28_02468 0.64 +0.1
2,943,174 - PFR28_02468 0.64 -0.4
2,943,174 - PFR28_02468 0.64 -0.7
2,943,207 + PFR28_02468 0.67 -0.2
2,943,207 + PFR28_02468 0.67 +1.0
2,943,207 + PFR28_02468 0.67 -0.4
2,943,208 - PFR28_02468 0.67 -0.6
2,943,216 + PFR28_02468 0.68 -0.2
2,943,216 + PFR28_02468 0.68 +0.5
2,943,216 + PFR28_02468 0.68 -0.1
2,943,216 + PFR28_02468 0.68 -0.9
2,943,216 + PFR28_02468 0.68 -0.1
2,943,216 + PFR28_02468 0.68 +0.4
2,943,216 + PFR28_02468 0.68 +0.3
2,943,216 + PFR28_02468 0.68 +0.7
2,943,216 + PFR28_02468 0.68 -0.1
2,943,216 + PFR28_02468 0.68 +0.3
2,943,216 + PFR28_02468 0.68 -0.8
2,943,216 + PFR28_02468 0.68 -0.9
2,943,216 + PFR28_02468 0.68 -0.4
2,943,216 + PFR28_02468 0.68 -0.5
2,943,216 + PFR28_02468 0.68 +0.7
2,943,216 + PFR28_02468 0.68 +2.0
2,943,216 + PFR28_02468 0.68 +0.3
2,943,216 + PFR28_02468 0.68 -0.3
2,943,216 + PFR28_02468 0.68 -0.3
2,943,216 + PFR28_02468 0.68 -0.4
2,943,217 - PFR28_02468 0.68 +0.4
2,943,217 - PFR28_02468 0.68 -0.3
2,943,217 - PFR28_02468 0.68 +0.5
2,943,217 - PFR28_02468 0.68 +0.4
2,943,217 - PFR28_02468 0.68 -0.1
2,943,217 - PFR28_02468 0.68 +0.4
2,943,217 - PFR28_02468 0.68 -0.3
2,943,217 - PFR28_02468 0.68 +0.0
2,943,217 - PFR28_02468 0.68 +0.8
2,943,399 + PFR28_02468 0.83 -0.1
2,943,399 + PFR28_02468 0.83 -0.3
2,943,399 + PFR28_02468 0.83 -0.9
2,943,457 + PFR28_02468 0.88 +0.2
2,943,458 - PFR28_02468 0.88 -1.5
2,943,748 - +0.0
2,943,791 + PFR28_02469 0.12 -0.8
2,943,792 - PFR28_02469 0.12 +0.0
2,943,792 - PFR28_02469 0.12 -0.2
2,943,792 - PFR28_02469 0.12 +1.0
2,943,792 - PFR28_02469 0.12 +0.5
2,943,792 - PFR28_02469 0.12 +0.3
2,943,804 - PFR28_02469 0.13 -1.6
2,943,804 - PFR28_02469 0.13 -1.2
2,943,804 - PFR28_02469 0.13 +0.3
2,944,106 + PFR28_02469 0.40 -0.4
2,944,106 + PFR28_02469 0.40 -0.3
2,944,107 - PFR28_02469 0.40 -0.9
2,944,107 - PFR28_02469 0.40 -0.9
2,944,107 - PFR28_02469 0.40 -1.0
2,944,107 - PFR28_02469 0.40 -0.1
2,944,107 - PFR28_02469 0.40 +0.3
2,944,457 + PFR28_02469 0.71 -0.3
2,944,457 + PFR28_02469 0.71 +0.4
2,944,457 + PFR28_02469 0.71 -0.1
2,944,457 + PFR28_02469 0.71 +0.5
2,944,457 + PFR28_02469 0.71 +0.0
2,944,458 - PFR28_02469 0.71 -0.7

Or see this region's nucleotide sequence