Experiment: mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02979 and PFR28_02980 are separated by 30 nucleotides PFR28_02980 and PFR28_02981 overlap by 126 nucleotides PFR28_02981 and PFR28_02982 are separated by 177 nucleotides
PFR28_02979: PFR28_02979 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 3,483,570 to 3,485,234
_02979
PFR28_02980: PFR28_02980 - hypothetical protein, at 3,485,265 to 3,485,543
_02980
PFR28_02981: PFR28_02981 - HTH-type transcriptional activator RhaS, at 3,485,418 to 3,486,308
_02981
PFR28_02982: PFR28_02982 - NADP-dependent alcohol dehydrogenase C 2, at 3,486,486 to 3,487,538
_02982
Position (kb)
3485
3486
3487 Strain fitness (log2 ratio)
-1
0
1
2 at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.232 kb on + strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.233 kb on - strand at 3485.456 kb on - strand at 3485.456 kb on - strand at 3485.464 kb on + strand at 3485.464 kb on + strand at 3485.465 kb on - strand at 3485.465 kb on - strand at 3485.494 kb on + strand at 3485.494 kb on + strand at 3485.541 kb on + strand at 3485.541 kb on + strand at 3485.542 kb on - strand at 3485.581 kb on + strand, within PFR28_02981 at 3485.581 kb on + strand, within PFR28_02981 at 3485.581 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3485.760 kb on + strand, within PFR28_02981 at 3486.034 kb on + strand, within PFR28_02981 at 3486.034 kb on + strand, within PFR28_02981 at 3486.034 kb on + strand, within PFR28_02981 at 3486.034 kb on + strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.035 kb on - strand, within PFR28_02981 at 3486.077 kb on - strand, within PFR28_02981 at 3486.091 kb on + strand, within PFR28_02981 at 3486.092 kb on - strand, within PFR28_02981 at 3486.115 kb on + strand, within PFR28_02981 at 3486.115 kb on + strand, within PFR28_02981 at 3486.160 kb on + strand, within PFR28_02981 at 3486.160 kb on + strand, within PFR28_02981 at 3486.161 kb on - strand, within PFR28_02981 at 3486.224 kb on + strand at 3486.224 kb on + strand at 3486.224 kb on + strand at 3486.224 kb on + strand at 3486.225 kb on - strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.311 kb on + strand at 3486.312 kb on - strand at 3486.312 kb on - strand at 3486.312 kb on - strand at 3486.364 kb on + strand at 3486.364 kb on + strand at 3486.364 kb on + strand at 3486.365 kb on - strand at 3486.365 kb on - strand at 3486.395 kb on + strand at 3486.396 kb on - strand at 3486.410 kb on + strand at 3486.450 kb on + strand at 3486.451 kb on - strand at 3486.473 kb on - strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.485 kb on + strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.486 kb on - strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.489 kb on + strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.490 kb on - strand at 3486.594 kb on + strand, within PFR28_02982 at 3486.594 kb on + strand, within PFR28_02982 at 3486.594 kb on + strand, within PFR28_02982 at 3486.594 kb on + strand, within PFR28_02982 at 3486.595 kb on - strand, within PFR28_02982 at 3486.720 kb on + strand, within PFR28_02982 at 3486.720 kb on + strand, within PFR28_02982 at 3486.720 kb on + strand, within PFR28_02982 at 3486.721 kb on - strand, within PFR28_02982 at 3486.721 kb on - strand, within PFR28_02982 at 3486.721 kb on - strand, within PFR28_02982 at 3486.721 kb on - strand, within PFR28_02982 at 3486.722 kb on + strand, within PFR28_02982 at 3486.722 kb on + strand, within PFR28_02982 at 3486.722 kb on + strand, within PFR28_02982 at 3486.722 kb on + strand, within PFR28_02982 at 3486.723 kb on - strand, within PFR28_02982 at 3486.723 kb on - strand, within PFR28_02982 at 3486.804 kb on + strand, within PFR28_02982 at 3486.804 kb on + strand, within PFR28_02982 at 3486.804 kb on + strand, within PFR28_02982 at 3486.804 kb on + strand, within PFR28_02982 at 3486.805 kb on - strand, within PFR28_02982 at 3486.805 kb on - strand, within PFR28_02982 at 3486.811 kb on - strand, within PFR28_02982 at 3486.811 kb on - strand, within PFR28_02982 at 3486.831 kb on + strand, within PFR28_02982 at 3486.831 kb on + strand, within PFR28_02982 at 3486.831 kb on + strand, within PFR28_02982 at 3486.831 kb on + strand, within PFR28_02982 at 3486.832 kb on - strand, within PFR28_02982 at 3486.832 kb on - strand, within PFR28_02982 at 3486.832 kb on - strand, within PFR28_02982 at 3486.978 kb on + strand, within PFR28_02982 at 3486.978 kb on + strand, within PFR28_02982 at 3486.978 kb on + strand, within PFR28_02982 at 3486.979 kb on - strand, within PFR28_02982 at 3486.979 kb on - strand, within PFR28_02982 at 3487.160 kb on - strand, within PFR28_02982 at 3487.160 kb on - strand, within PFR28_02982 at 3487.213 kb on + strand, within PFR28_02982 at 3487.288 kb on + strand, within PFR28_02982
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM remove 3,485,232 + -0.4 3,485,232 + +0.6 3,485,232 + +1.0 3,485,232 + -0.6 3,485,232 + +0.6 3,485,232 + +1.6 3,485,232 + -0.0 3,485,232 + +0.1 3,485,232 + +0.1 3,485,232 + +0.1 3,485,232 + -0.2 3,485,232 + +1.6 3,485,232 + -0.1 3,485,232 + -0.3 3,485,232 + -0.1 3,485,232 + -0.3 3,485,232 + -0.5 3,485,232 + -0.5 3,485,232 + -0.1 3,485,233 - +1.4 3,485,233 - +0.0 3,485,233 - -0.1 3,485,233 - -0.2 3,485,233 - -0.1 3,485,233 - +0.2 3,485,233 - -0.4 3,485,233 - -0.4 3,485,233 - +0.4 3,485,233 - -0.4 3,485,233 - -1.2 3,485,233 - +0.5 3,485,233 - +0.6 3,485,233 - +0.1 3,485,233 - -0.9 3,485,233 - +0.4 3,485,233 - -0.0 3,485,233 - -0.5 3,485,233 - +0.1 3,485,456 - -1.0 3,485,456 - -0.8 3,485,464 + +0.1 3,485,464 + -0.3 3,485,465 - -0.9 3,485,465 - +0.4 3,485,494 + -0.1 3,485,494 + -0.1 3,485,541 + +0.5 3,485,541 + +0.4 3,485,542 - -0.2 3,485,581 + PFR28_02981 0.18 +0.5 3,485,581 + PFR28_02981 0.18 -0.2 3,485,581 + PFR28_02981 0.18 +0.1 3,485,760 + PFR28_02981 0.38 +1.2 3,485,760 + PFR28_02981 0.38 -0.9 3,485,760 + PFR28_02981 0.38 +1.3 3,485,760 + PFR28_02981 0.38 +0.2 3,485,760 + PFR28_02981 0.38 +0.7 3,485,760 + PFR28_02981 0.38 -0.1 3,486,034 + PFR28_02981 0.69 +0.9 3,486,034 + PFR28_02981 0.69 +1.9 3,486,034 + PFR28_02981 0.69 -1.0 3,486,034 + PFR28_02981 0.69 +1.5 3,486,035 - PFR28_02981 0.69 -0.5 3,486,035 - PFR28_02981 0.69 +1.6 3,486,035 - PFR28_02981 0.69 -1.0 3,486,035 - PFR28_02981 0.69 -0.4 3,486,035 - PFR28_02981 0.69 -0.6 3,486,035 - PFR28_02981 0.69 +1.0 3,486,035 - PFR28_02981 0.69 +0.1 3,486,035 - PFR28_02981 0.69 +0.5 3,486,077 - PFR28_02981 0.74 -0.3 3,486,091 + PFR28_02981 0.76 -1.1 3,486,092 - PFR28_02981 0.76 -0.5 3,486,115 + PFR28_02981 0.78 -0.5 3,486,115 + PFR28_02981 0.78 +0.3 3,486,160 + PFR28_02981 0.83 +0.9 3,486,160 + PFR28_02981 0.83 +0.3 3,486,161 - PFR28_02981 0.83 +0.4 3,486,224 + +0.3 3,486,224 + +1.1 3,486,224 + +0.8 3,486,224 + +0.7 3,486,225 - +0.3 3,486,311 + +0.5 3,486,311 + +0.4 3,486,311 + -0.3 3,486,311 + +0.4 3,486,311 + +0.3 3,486,311 + +0.5 3,486,311 + +0.2 3,486,311 + +0.5 3,486,311 + -0.4 3,486,311 + +0.9 3,486,312 - -1.3 3,486,312 - +0.8 3,486,312 - -0.3 3,486,364 + -0.7 3,486,364 + +1.5 3,486,364 + -0.3 3,486,365 - +0.3 3,486,365 - -0.8 3,486,395 + +0.9 3,486,396 - +0.9 3,486,410 + +0.0 3,486,450 + +0.2 3,486,451 - +0.2 3,486,473 - -1.4 3,486,485 + -1.0 3,486,485 + +0.2 3,486,485 + +0.3 3,486,485 + +2.6 3,486,485 + -0.4 3,486,485 + +0.9 3,486,485 + +0.9 3,486,485 + +0.5 3,486,485 + +0.2 3,486,485 + +0.1 3,486,485 + +1.1 3,486,485 + +0.6 3,486,485 + +0.2 3,486,486 - -0.2 3,486,486 - -0.9 3,486,486 - -0.6 3,486,486 - +0.4 3,486,486 - -1.1 3,486,486 - +0.9 3,486,486 - -0.2 3,486,486 - +2.2 3,486,486 - +0.8 3,486,486 - -0.2 3,486,486 - +2.1 3,486,486 - +0.1 3,486,486 - +0.2 3,486,486 - +0.5 3,486,489 + +0.9 3,486,489 + +0.6 3,486,489 + +1.9 3,486,489 + +0.4 3,486,489 + +0.6 3,486,489 + +0.9 3,486,489 + +0.4 3,486,489 + +0.3 3,486,489 + +0.3 3,486,489 + -0.3 3,486,490 - +0.4 3,486,490 - +0.6 3,486,490 - +0.2 3,486,490 - -0.2 3,486,490 - -1.7 3,486,490 - +0.4 3,486,490 - -0.0 3,486,490 - -0.5 3,486,490 - -0.8 3,486,490 - -0.7 3,486,490 - +0.9 3,486,594 + PFR28_02982 0.10 -0.1 3,486,594 + PFR28_02982 0.10 +1.4 3,486,594 + PFR28_02982 0.10 +0.0 3,486,594 + PFR28_02982 0.10 +0.4 3,486,595 - PFR28_02982 0.10 +0.1 3,486,720 + PFR28_02982 0.22 +0.6 3,486,720 + PFR28_02982 0.22 -0.1 3,486,720 + PFR28_02982 0.22 -0.1 3,486,721 - PFR28_02982 0.22 -0.0 3,486,721 - PFR28_02982 0.22 -0.1 3,486,721 - PFR28_02982 0.22 -1.5 3,486,721 - PFR28_02982 0.22 +1.1 3,486,722 + PFR28_02982 0.22 +1.0 3,486,722 + PFR28_02982 0.22 +0.5 3,486,722 + PFR28_02982 0.22 +0.7 3,486,722 + PFR28_02982 0.22 +1.2 3,486,723 - PFR28_02982 0.23 +2.2 3,486,723 - PFR28_02982 0.23 -0.2 3,486,804 + PFR28_02982 0.30 -0.2 3,486,804 + PFR28_02982 0.30 -0.3 3,486,804 + PFR28_02982 0.30 +0.4 3,486,804 + PFR28_02982 0.30 +0.7 3,486,805 - PFR28_02982 0.30 -0.1 3,486,805 - PFR28_02982 0.30 -0.1 3,486,811 - PFR28_02982 0.31 +0.9 3,486,811 - PFR28_02982 0.31 -0.3 3,486,831 + PFR28_02982 0.33 -1.2 3,486,831 + PFR28_02982 0.33 +0.7 3,486,831 + PFR28_02982 0.33 -1.2 3,486,831 + PFR28_02982 0.33 +0.7 3,486,832 - PFR28_02982 0.33 -1.1 3,486,832 - PFR28_02982 0.33 -0.0 3,486,832 - PFR28_02982 0.33 +0.7 3,486,978 + PFR28_02982 0.47 -0.6 3,486,978 + PFR28_02982 0.47 +0.6 3,486,978 + PFR28_02982 0.47 +0.5 3,486,979 - PFR28_02982 0.47 -0.5 3,486,979 - PFR28_02982 0.47 +0.1 3,487,160 - PFR28_02982 0.64 +0.5 3,487,160 - PFR28_02982 0.64 +0.6 3,487,213 + PFR28_02982 0.69 +1.3 3,487,288 + PFR28_02982 0.76 -1.2
Or see this region's nucleotide sequence