Strain Fitness in Pseudomonas sp. RS175 around PFR28_02981

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02979 and PFR28_02980 are separated by 30 nucleotidesPFR28_02980 and PFR28_02981 overlap by 126 nucleotidesPFR28_02981 and PFR28_02982 are separated by 177 nucleotides PFR28_02979: PFR28_02979 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 3,483,570 to 3,485,234 _02979 PFR28_02980: PFR28_02980 - hypothetical protein, at 3,485,265 to 3,485,543 _02980 PFR28_02981: PFR28_02981 - HTH-type transcriptional activator RhaS, at 3,485,418 to 3,486,308 _02981 PFR28_02982: PFR28_02982 - NADP-dependent alcohol dehydrogenase C 2, at 3,486,486 to 3,487,538 _02982 Position (kb) 3485 3486 3487Strain fitness (log2 ratio) -1 0 1 2at 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.232 kb on + strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.233 kb on - strandat 3485.456 kb on - strandat 3485.456 kb on - strandat 3485.464 kb on + strandat 3485.464 kb on + strandat 3485.465 kb on - strandat 3485.465 kb on - strandat 3485.494 kb on + strandat 3485.494 kb on + strandat 3485.541 kb on + strandat 3485.541 kb on + strandat 3485.542 kb on - strandat 3485.581 kb on + strand, within PFR28_02981at 3485.581 kb on + strand, within PFR28_02981at 3485.581 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3485.760 kb on + strand, within PFR28_02981at 3486.034 kb on + strand, within PFR28_02981at 3486.034 kb on + strand, within PFR28_02981at 3486.034 kb on + strand, within PFR28_02981at 3486.034 kb on + strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.035 kb on - strand, within PFR28_02981at 3486.077 kb on - strand, within PFR28_02981at 3486.091 kb on + strand, within PFR28_02981at 3486.092 kb on - strand, within PFR28_02981at 3486.115 kb on + strand, within PFR28_02981at 3486.115 kb on + strand, within PFR28_02981at 3486.160 kb on + strand, within PFR28_02981at 3486.160 kb on + strand, within PFR28_02981at 3486.161 kb on - strand, within PFR28_02981at 3486.224 kb on + strandat 3486.224 kb on + strandat 3486.224 kb on + strandat 3486.224 kb on + strandat 3486.225 kb on - strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.311 kb on + strandat 3486.312 kb on - strandat 3486.312 kb on - strandat 3486.312 kb on - strandat 3486.364 kb on + strandat 3486.364 kb on + strandat 3486.364 kb on + strandat 3486.365 kb on - strandat 3486.365 kb on - strandat 3486.395 kb on + strandat 3486.396 kb on - strandat 3486.410 kb on + strandat 3486.450 kb on + strandat 3486.451 kb on - strandat 3486.473 kb on - strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.485 kb on + strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.486 kb on - strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.489 kb on + strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.490 kb on - strandat 3486.594 kb on + strand, within PFR28_02982at 3486.594 kb on + strand, within PFR28_02982at 3486.594 kb on + strand, within PFR28_02982at 3486.594 kb on + strand, within PFR28_02982at 3486.595 kb on - strand, within PFR28_02982at 3486.720 kb on + strand, within PFR28_02982at 3486.720 kb on + strand, within PFR28_02982at 3486.720 kb on + strand, within PFR28_02982at 3486.721 kb on - strand, within PFR28_02982at 3486.721 kb on - strand, within PFR28_02982at 3486.721 kb on - strand, within PFR28_02982at 3486.721 kb on - strand, within PFR28_02982at 3486.722 kb on + strand, within PFR28_02982at 3486.722 kb on + strand, within PFR28_02982at 3486.722 kb on + strand, within PFR28_02982at 3486.722 kb on + strand, within PFR28_02982at 3486.723 kb on - strand, within PFR28_02982at 3486.723 kb on - strand, within PFR28_02982at 3486.804 kb on + strand, within PFR28_02982at 3486.804 kb on + strand, within PFR28_02982at 3486.804 kb on + strand, within PFR28_02982at 3486.804 kb on + strand, within PFR28_02982at 3486.805 kb on - strand, within PFR28_02982at 3486.805 kb on - strand, within PFR28_02982at 3486.811 kb on - strand, within PFR28_02982at 3486.811 kb on - strand, within PFR28_02982at 3486.831 kb on + strand, within PFR28_02982at 3486.831 kb on + strand, within PFR28_02982at 3486.831 kb on + strand, within PFR28_02982at 3486.831 kb on + strand, within PFR28_02982at 3486.832 kb on - strand, within PFR28_02982at 3486.832 kb on - strand, within PFR28_02982at 3486.832 kb on - strand, within PFR28_02982at 3486.978 kb on + strand, within PFR28_02982at 3486.978 kb on + strand, within PFR28_02982at 3486.978 kb on + strand, within PFR28_02982at 3486.979 kb on - strand, within PFR28_02982at 3486.979 kb on - strand, within PFR28_02982at 3487.160 kb on - strand, within PFR28_02982at 3487.160 kb on - strand, within PFR28_02982at 3487.213 kb on + strand, within PFR28_02982at 3487.288 kb on + strand, within PFR28_02982

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
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3,485,232 + -0.4
3,485,232 + +0.6
3,485,232 + +1.0
3,485,232 + -0.6
3,485,232 + +0.6
3,485,232 + +1.6
3,485,232 + -0.0
3,485,232 + +0.1
3,485,232 + +0.1
3,485,232 + +0.1
3,485,232 + -0.2
3,485,232 + +1.6
3,485,232 + -0.1
3,485,232 + -0.3
3,485,232 + -0.1
3,485,232 + -0.3
3,485,232 + -0.5
3,485,232 + -0.5
3,485,232 + -0.1
3,485,233 - +1.4
3,485,233 - +0.0
3,485,233 - -0.1
3,485,233 - -0.2
3,485,233 - -0.1
3,485,233 - +0.2
3,485,233 - -0.4
3,485,233 - -0.4
3,485,233 - +0.4
3,485,233 - -0.4
3,485,233 - -1.2
3,485,233 - +0.5
3,485,233 - +0.6
3,485,233 - +0.1
3,485,233 - -0.9
3,485,233 - +0.4
3,485,233 - -0.0
3,485,233 - -0.5
3,485,233 - +0.1
3,485,456 - -1.0
3,485,456 - -0.8
3,485,464 + +0.1
3,485,464 + -0.3
3,485,465 - -0.9
3,485,465 - +0.4
3,485,494 + -0.1
3,485,494 + -0.1
3,485,541 + +0.5
3,485,541 + +0.4
3,485,542 - -0.2
3,485,581 + PFR28_02981 0.18 +0.5
3,485,581 + PFR28_02981 0.18 -0.2
3,485,581 + PFR28_02981 0.18 +0.1
3,485,760 + PFR28_02981 0.38 +1.2
3,485,760 + PFR28_02981 0.38 -0.9
3,485,760 + PFR28_02981 0.38 +1.3
3,485,760 + PFR28_02981 0.38 +0.2
3,485,760 + PFR28_02981 0.38 +0.7
3,485,760 + PFR28_02981 0.38 -0.1
3,486,034 + PFR28_02981 0.69 +0.9
3,486,034 + PFR28_02981 0.69 +1.9
3,486,034 + PFR28_02981 0.69 -1.0
3,486,034 + PFR28_02981 0.69 +1.5
3,486,035 - PFR28_02981 0.69 -0.5
3,486,035 - PFR28_02981 0.69 +1.6
3,486,035 - PFR28_02981 0.69 -1.0
3,486,035 - PFR28_02981 0.69 -0.4
3,486,035 - PFR28_02981 0.69 -0.6
3,486,035 - PFR28_02981 0.69 +1.0
3,486,035 - PFR28_02981 0.69 +0.1
3,486,035 - PFR28_02981 0.69 +0.5
3,486,077 - PFR28_02981 0.74 -0.3
3,486,091 + PFR28_02981 0.76 -1.1
3,486,092 - PFR28_02981 0.76 -0.5
3,486,115 + PFR28_02981 0.78 -0.5
3,486,115 + PFR28_02981 0.78 +0.3
3,486,160 + PFR28_02981 0.83 +0.9
3,486,160 + PFR28_02981 0.83 +0.3
3,486,161 - PFR28_02981 0.83 +0.4
3,486,224 + +0.3
3,486,224 + +1.1
3,486,224 + +0.8
3,486,224 + +0.7
3,486,225 - +0.3
3,486,311 + +0.5
3,486,311 + +0.4
3,486,311 + -0.3
3,486,311 + +0.4
3,486,311 + +0.3
3,486,311 + +0.5
3,486,311 + +0.2
3,486,311 + +0.5
3,486,311 + -0.4
3,486,311 + +0.9
3,486,312 - -1.3
3,486,312 - +0.8
3,486,312 - -0.3
3,486,364 + -0.7
3,486,364 + +1.5
3,486,364 + -0.3
3,486,365 - +0.3
3,486,365 - -0.8
3,486,395 + +0.9
3,486,396 - +0.9
3,486,410 + +0.0
3,486,450 + +0.2
3,486,451 - +0.2
3,486,473 - -1.4
3,486,485 + -1.0
3,486,485 + +0.2
3,486,485 + +0.3
3,486,485 + +2.6
3,486,485 + -0.4
3,486,485 + +0.9
3,486,485 + +0.9
3,486,485 + +0.5
3,486,485 + +0.2
3,486,485 + +0.1
3,486,485 + +1.1
3,486,485 + +0.6
3,486,485 + +0.2
3,486,486 - -0.2
3,486,486 - -0.9
3,486,486 - -0.6
3,486,486 - +0.4
3,486,486 - -1.1
3,486,486 - +0.9
3,486,486 - -0.2
3,486,486 - +2.2
3,486,486 - +0.8
3,486,486 - -0.2
3,486,486 - +2.1
3,486,486 - +0.1
3,486,486 - +0.2
3,486,486 - +0.5
3,486,489 + +0.9
3,486,489 + +0.6
3,486,489 + +1.9
3,486,489 + +0.4
3,486,489 + +0.6
3,486,489 + +0.9
3,486,489 + +0.4
3,486,489 + +0.3
3,486,489 + +0.3
3,486,489 + -0.3
3,486,490 - +0.4
3,486,490 - +0.6
3,486,490 - +0.2
3,486,490 - -0.2
3,486,490 - -1.7
3,486,490 - +0.4
3,486,490 - -0.0
3,486,490 - -0.5
3,486,490 - -0.8
3,486,490 - -0.7
3,486,490 - +0.9
3,486,594 + PFR28_02982 0.10 -0.1
3,486,594 + PFR28_02982 0.10 +1.4
3,486,594 + PFR28_02982 0.10 +0.0
3,486,594 + PFR28_02982 0.10 +0.4
3,486,595 - PFR28_02982 0.10 +0.1
3,486,720 + PFR28_02982 0.22 +0.6
3,486,720 + PFR28_02982 0.22 -0.1
3,486,720 + PFR28_02982 0.22 -0.1
3,486,721 - PFR28_02982 0.22 -0.0
3,486,721 - PFR28_02982 0.22 -0.1
3,486,721 - PFR28_02982 0.22 -1.5
3,486,721 - PFR28_02982 0.22 +1.1
3,486,722 + PFR28_02982 0.22 +1.0
3,486,722 + PFR28_02982 0.22 +0.5
3,486,722 + PFR28_02982 0.22 +0.7
3,486,722 + PFR28_02982 0.22 +1.2
3,486,723 - PFR28_02982 0.23 +2.2
3,486,723 - PFR28_02982 0.23 -0.2
3,486,804 + PFR28_02982 0.30 -0.2
3,486,804 + PFR28_02982 0.30 -0.3
3,486,804 + PFR28_02982 0.30 +0.4
3,486,804 + PFR28_02982 0.30 +0.7
3,486,805 - PFR28_02982 0.30 -0.1
3,486,805 - PFR28_02982 0.30 -0.1
3,486,811 - PFR28_02982 0.31 +0.9
3,486,811 - PFR28_02982 0.31 -0.3
3,486,831 + PFR28_02982 0.33 -1.2
3,486,831 + PFR28_02982 0.33 +0.7
3,486,831 + PFR28_02982 0.33 -1.2
3,486,831 + PFR28_02982 0.33 +0.7
3,486,832 - PFR28_02982 0.33 -1.1
3,486,832 - PFR28_02982 0.33 -0.0
3,486,832 - PFR28_02982 0.33 +0.7
3,486,978 + PFR28_02982 0.47 -0.6
3,486,978 + PFR28_02982 0.47 +0.6
3,486,978 + PFR28_02982 0.47 +0.5
3,486,979 - PFR28_02982 0.47 -0.5
3,486,979 - PFR28_02982 0.47 +0.1
3,487,160 - PFR28_02982 0.64 +0.5
3,487,160 - PFR28_02982 0.64 +0.6
3,487,213 + PFR28_02982 0.69 +1.3
3,487,288 + PFR28_02982 0.76 -1.2

Or see this region's nucleotide sequence